Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08750

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08740 and ABID97_RS08745 are separated by 16 nucleotidesABID97_RS08745 and ABID97_RS08750 are separated by 104 nucleotidesABID97_RS08750 and ABID97_RS08755 are separated by 133 nucleotidesABID97_RS08755 and ABID97_RS08760 are separated by 144 nucleotides ABID97_RS08740: ABID97_RS08740 - 30S ribosomal protein S16, at 1,831,848 to 1,832,111 _RS08740 ABID97_RS08745: ABID97_RS08745 - ribosome maturation factor RimM, at 1,832,128 to 1,832,682 _RS08745 ABID97_RS08750: ABID97_RS08750 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 1,832,787 to 1,833,533 _RS08750 ABID97_RS08755: ABID97_RS08755 - 50S ribosomal protein L19, at 1,833,667 to 1,834,041 _RS08755 ABID97_RS08760: ABID97_RS08760 - CoA pyrophosphatase, at 1,834,186 to 1,834,905 _RS08760 Position (kb) 1832 1833 1834Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1832.109 kb on + strandat 1832.109 kb on + strandat 1832.677 kb on + strandat 1833.964 kb on + strand, within ABID97_RS08755at 1833.964 kb on + strand, within ABID97_RS08755at 1833.964 kb on + strand, within ABID97_RS08755at 1833.964 kb on + strand, within ABID97_RS08755at 1833.967 kb on + strand, within ABID97_RS08755at 1833.968 kb on - strand, within ABID97_RS08755at 1834.039 kb on + strandat 1834.039 kb on + strandat 1834.039 kb on + strandat 1834.039 kb on + strandat 1834.134 kb on + strandat 1834.134 kb on + strandat 1834.134 kb on + strandat 1834.135 kb on - strandat 1834.135 kb on - strandat 1834.135 kb on - strandat 1834.135 kb on - strandat 1834.141 kb on + strandat 1834.141 kb on + strandat 1834.141 kb on + strandat 1834.142 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,832,109 + +0.4
1,832,109 + +0.4
1,832,677 + -0.5
1,833,964 + ABID97_RS08755 0.79 -4.3
1,833,964 + ABID97_RS08755 0.79 -1.7
1,833,964 + ABID97_RS08755 0.79 +3.0
1,833,964 + ABID97_RS08755 0.79 -1.7
1,833,967 + ABID97_RS08755 0.80 -0.4
1,833,968 - ABID97_RS08755 0.80 +3.3
1,834,039 + -0.6
1,834,039 + -1.1
1,834,039 + +0.4
1,834,039 + -1.4
1,834,134 + +0.5
1,834,134 + -1.0
1,834,134 + -1.6
1,834,135 - +2.0
1,834,135 - -1.1
1,834,135 - -2.0
1,834,135 - -0.6
1,834,141 + +0.3
1,834,141 + -2.2
1,834,141 + -1.5
1,834,142 - +0.6

Or see this region's nucleotide sequence