Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08740 and ABID97_RS08745 are separated by 16 nucleotides ABID97_RS08745 and ABID97_RS08750 are separated by 104 nucleotides ABID97_RS08750 and ABID97_RS08755 are separated by 133 nucleotides ABID97_RS08755 and ABID97_RS08760 are separated by 144 nucleotides
ABID97_RS08740: ABID97_RS08740 - 30S ribosomal protein S16, at 1,831,848 to 1,832,111
_RS08740
ABID97_RS08745: ABID97_RS08745 - ribosome maturation factor RimM, at 1,832,128 to 1,832,682
_RS08745
ABID97_RS08750: ABID97_RS08750 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 1,832,787 to 1,833,533
_RS08750
ABID97_RS08755: ABID97_RS08755 - 50S ribosomal protein L19, at 1,833,667 to 1,834,041
_RS08755
ABID97_RS08760: ABID97_RS08760 - CoA pyrophosphatase, at 1,834,186 to 1,834,905
_RS08760
Position (kb)
1832
1833
1834 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1832.109 kb on + strand at 1832.109 kb on + strand at 1832.677 kb on + strand at 1833.964 kb on + strand, within ABID97_RS08755 at 1833.964 kb on + strand, within ABID97_RS08755 at 1833.964 kb on + strand, within ABID97_RS08755 at 1833.964 kb on + strand, within ABID97_RS08755 at 1833.967 kb on + strand, within ABID97_RS08755 at 1833.968 kb on - strand, within ABID97_RS08755 at 1834.039 kb on + strand at 1834.039 kb on + strand at 1834.039 kb on + strand at 1834.039 kb on + strand at 1834.134 kb on + strand at 1834.134 kb on + strand at 1834.134 kb on + strand at 1834.135 kb on - strand at 1834.135 kb on - strand at 1834.135 kb on - strand at 1834.135 kb on - strand at 1834.141 kb on + strand at 1834.141 kb on + strand at 1834.141 kb on + strand at 1834.142 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,832,109 + +0.4 1,832,109 + +0.4 1,832,677 + -0.5 1,833,964 + ABID97_RS08755 0.79 -4.3 1,833,964 + ABID97_RS08755 0.79 -1.7 1,833,964 + ABID97_RS08755 0.79 +3.0 1,833,964 + ABID97_RS08755 0.79 -1.7 1,833,967 + ABID97_RS08755 0.80 -0.4 1,833,968 - ABID97_RS08755 0.80 +3.3 1,834,039 + -0.6 1,834,039 + -1.1 1,834,039 + +0.4 1,834,039 + -1.4 1,834,134 + +0.5 1,834,134 + -1.0 1,834,134 + -1.6 1,834,135 - +2.0 1,834,135 - -1.1 1,834,135 - -2.0 1,834,135 - -0.6 1,834,141 + +0.3 1,834,141 + -2.2 1,834,141 + -1.5 1,834,142 - +0.6
Or see this region's nucleotide sequence