Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07985 and ABID97_RS07990 are separated by 10 nucleotides ABID97_RS07990 and ABID97_RS07995 are separated by 7 nucleotides ABID97_RS07995 and ABID97_RS08000 are separated by 110 nucleotides ABID97_RS08000 and ABID97_RS08005 are separated by 26 nucleotides
ABID97_RS07985: ABID97_RS07985 - aspartate carbamoyltransferase, at 1,678,438 to 1,679,715
_RS07985
ABID97_RS07990: ABID97_RS07990 - TIGR02117 family protein, at 1,679,726 to 1,680,400
_RS07990
ABID97_RS07995: ABID97_RS07995 - DNA polymerase IV, at 1,680,408 to 1,681,655
_RS07995
ABID97_RS08000: ABID97_RS08000 - putative glycolipid-binding domain-containing protein, at 1,681,766 to 1,682,326
_RS08000
ABID97_RS08005: ABID97_RS08005 - MFS family transporter, at 1,682,353 to 1,683,693
_RS08005
Position (kb) 1680
1681
1682 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1679.413 kb on + strand, within ABID97_RS07985 at 1679.869 kb on - strand, within ABID97_RS07990 at 1679.869 kb on - strand, within ABID97_RS07990 at 1679.869 kb on - strand, within ABID97_RS07990 at 1679.961 kb on + strand, within ABID97_RS07990 at 1679.961 kb on + strand, within ABID97_RS07990 at 1679.962 kb on - strand, within ABID97_RS07990 at 1680.021 kb on + strand, within ABID97_RS07990 at 1680.022 kb on - strand, within ABID97_RS07990 at 1680.111 kb on + strand, within ABID97_RS07990 at 1680.112 kb on - strand, within ABID97_RS07990 at 1680.337 kb on - strand at 1680.337 kb on - strand at 1680.653 kb on - strand, within ABID97_RS07995 at 1680.686 kb on - strand, within ABID97_RS07995 at 1680.686 kb on - strand, within ABID97_RS07995 at 1681.039 kb on + strand, within ABID97_RS07995 at 1681.219 kb on + strand, within ABID97_RS07995 at 1681.219 kb on + strand, within ABID97_RS07995 at 1681.219 kb on + strand, within ABID97_RS07995 at 1681.219 kb on + strand, within ABID97_RS07995 at 1681.219 kb on + strand, within ABID97_RS07995 at 1681.219 kb on + strand, within ABID97_RS07995 at 1681.219 kb on + strand, within ABID97_RS07995 at 1681.220 kb on - strand, within ABID97_RS07995 at 1681.220 kb on - strand, within ABID97_RS07995 at 1681.291 kb on + strand, within ABID97_RS07995 at 1681.433 kb on - strand, within ABID97_RS07995 at 1681.910 kb on + strand, within ABID97_RS08000 at 1682.201 kb on + strand, within ABID97_RS08000 at 1682.226 kb on - strand, within ABID97_RS08000 at 1682.226 kb on - strand, within ABID97_RS08000 at 1682.298 kb on - strand at 1682.325 kb on - strand at 1682.372 kb on + strand at 1682.373 kb on - strand at 1682.487 kb on - strand, within ABID97_RS08005 at 1682.487 kb on - strand, within ABID97_RS08005 at 1682.525 kb on + strand, within ABID97_RS08005 at 1682.600 kb on + strand, within ABID97_RS08005 at 1682.601 kb on - strand, within ABID97_RS08005 at 1682.601 kb on - strand, within ABID97_RS08005
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,679,413 + ABID97_RS07985 0.76 -0.3 1,679,869 - ABID97_RS07990 0.21 +1.9 1,679,869 - ABID97_RS07990 0.21 -1.1 1,679,869 - ABID97_RS07990 0.21 -0.2 1,679,961 + ABID97_RS07990 0.35 -0.7 1,679,961 + ABID97_RS07990 0.35 +0.7 1,679,962 - ABID97_RS07990 0.35 +0.9 1,680,021 + ABID97_RS07990 0.44 -0.2 1,680,022 - ABID97_RS07990 0.44 -0.8 1,680,111 + ABID97_RS07990 0.57 +0.0 1,680,112 - ABID97_RS07990 0.57 -2.1 1,680,337 - +0.2 1,680,337 - -1.0 1,680,653 - ABID97_RS07995 0.20 +0.2 1,680,686 - ABID97_RS07995 0.22 +0.3 1,680,686 - ABID97_RS07995 0.22 +1.9 1,681,039 + ABID97_RS07995 0.51 +2.9 1,681,219 + ABID97_RS07995 0.65 -0.7 1,681,219 + ABID97_RS07995 0.65 -0.2 1,681,219 + ABID97_RS07995 0.65 -0.1 1,681,219 + ABID97_RS07995 0.65 -0.1 1,681,219 + ABID97_RS07995 0.65 -0.3 1,681,219 + ABID97_RS07995 0.65 +0.2 1,681,219 + ABID97_RS07995 0.65 +0.6 1,681,220 - ABID97_RS07995 0.65 -0.2 1,681,220 - ABID97_RS07995 0.65 -1.0 1,681,291 + ABID97_RS07995 0.71 -0.3 1,681,433 - ABID97_RS07995 0.82 -0.3 1,681,910 + ABID97_RS08000 0.26 -1.4 1,682,201 + ABID97_RS08000 0.78 -0.1 1,682,226 - ABID97_RS08000 0.82 -1.3 1,682,226 - ABID97_RS08000 0.82 -0.0 1,682,298 - -0.1 1,682,325 - -0.6 1,682,372 + -0.2 1,682,373 - -0.9 1,682,487 - ABID97_RS08005 0.10 +0.7 1,682,487 - ABID97_RS08005 0.10 -1.1 1,682,525 + ABID97_RS08005 0.13 -0.1 1,682,600 + ABID97_RS08005 0.18 +0.2 1,682,601 - ABID97_RS08005 0.18 +0.4 1,682,601 - ABID97_RS08005 0.18 +0.2
Or see this region's nucleotide sequence