Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06900

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS06895 and ABID97_RS06900 are separated by 13 nucleotidesABID97_RS06900 and ABID97_RS06905 are separated by 139 nucleotides ABID97_RS06895: ABID97_RS06895 - cyanophycin synthetase, at 1,455,117 to 1,457,684 _RS06895 ABID97_RS06900: ABID97_RS06900 - cyanophycin synthetase, at 1,457,698 to 1,459,941 _RS06900 ABID97_RS06905: ABID97_RS06905 - ABC transporter ATP-binding protein, at 1,460,081 to 1,462,357 _RS06905 Position (kb) 1457 1458 1459 1460Strain fitness (log2 ratio) -2 -1 0 1at 1457.375 kb on - strand, within ABID97_RS06895at 1457.393 kb on - strand, within ABID97_RS06895at 1457.393 kb on - strand, within ABID97_RS06895at 1458.030 kb on - strand, within ABID97_RS06900at 1458.173 kb on + strand, within ABID97_RS06900at 1459.307 kb on + strand, within ABID97_RS06900at 1459.308 kb on - strand, within ABID97_RS06900at 1459.349 kb on + strand, within ABID97_RS06900at 1459.446 kb on - strand, within ABID97_RS06900at 1459.601 kb on + strand, within ABID97_RS06900at 1459.901 kb on + strandat 1459.902 kb on - strandat 1459.902 kb on - strandat 1460.387 kb on + strand, within ABID97_RS06905at 1460.530 kb on + strand, within ABID97_RS06905at 1460.530 kb on + strand, within ABID97_RS06905at 1460.530 kb on + strand, within ABID97_RS06905at 1460.531 kb on - strand, within ABID97_RS06905at 1460.639 kb on + strand, within ABID97_RS06905at 1460.721 kb on - strand, within ABID97_RS06905at 1460.780 kb on + strand, within ABID97_RS06905at 1460.781 kb on - strand, within ABID97_RS06905at 1460.834 kb on + strand, within ABID97_RS06905at 1460.834 kb on + strand, within ABID97_RS06905at 1460.834 kb on + strand, within ABID97_RS06905at 1460.835 kb on - strand, within ABID97_RS06905at 1460.835 kb on - strand, within ABID97_RS06905at 1460.835 kb on - strand, within ABID97_RS06905at 1460.864 kb on + strand, within ABID97_RS06905

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
1,457,375 - ABID97_RS06895 0.88 +0.4
1,457,393 - ABID97_RS06895 0.89 +0.9
1,457,393 - ABID97_RS06895 0.89 -1.6
1,458,030 - ABID97_RS06900 0.15 +0.6
1,458,173 + ABID97_RS06900 0.21 -0.4
1,459,307 + ABID97_RS06900 0.72 +0.6
1,459,308 - ABID97_RS06900 0.72 +1.0
1,459,349 + ABID97_RS06900 0.74 -0.0
1,459,446 - ABID97_RS06900 0.78 +1.0
1,459,601 + ABID97_RS06900 0.85 +0.5
1,459,901 + +0.2
1,459,902 - +0.1
1,459,902 - -0.1
1,460,387 + ABID97_RS06905 0.13 -1.0
1,460,530 + ABID97_RS06905 0.20 +0.0
1,460,530 + ABID97_RS06905 0.20 +0.6
1,460,530 + ABID97_RS06905 0.20 -1.1
1,460,531 - ABID97_RS06905 0.20 -0.3
1,460,639 + ABID97_RS06905 0.25 +1.1
1,460,721 - ABID97_RS06905 0.28 +0.1
1,460,780 + ABID97_RS06905 0.31 +0.2
1,460,781 - ABID97_RS06905 0.31 -1.9
1,460,834 + ABID97_RS06905 0.33 -1.3
1,460,834 + ABID97_RS06905 0.33 +0.1
1,460,834 + ABID97_RS06905 0.33 -0.7
1,460,835 - ABID97_RS06905 0.33 -1.3
1,460,835 - ABID97_RS06905 0.33 +0.2
1,460,835 - ABID97_RS06905 0.33 -0.2
1,460,864 + ABID97_RS06905 0.34 -0.4

Or see this region's nucleotide sequence