Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06710

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS06700 and ABID97_RS06705 are separated by 154 nucleotidesABID97_RS06705 and ABID97_RS06710 are separated by 39 nucleotidesABID97_RS06710 and ABID97_RS06715 are separated by 241 nucleotides ABID97_RS06700: ABID97_RS06700 - DUF4142 domain-containing protein, at 1,412,627 to 1,413,181 _RS06700 ABID97_RS06705: ABID97_RS06705 - alpha/beta fold hydrolase, at 1,413,336 to 1,414,019 _RS06705 ABID97_RS06710: ABID97_RS06710 - hypothetical protein, at 1,414,059 to 1,414,265 _RS06710 ABID97_RS06715: ABID97_RS06715 - S9 family peptidase, at 1,414,507 to 1,416,561 _RS06715 Position (kb) 1414 1415Strain fitness (log2 ratio) -1 0 1 2at 1413.204 kb on + strandat 1413.236 kb on + strandat 1413.240 kb on + strandat 1413.240 kb on + strandat 1413.240 kb on + strandat 1413.241 kb on - strandat 1413.612 kb on + strand, within ABID97_RS06705at 1413.612 kb on + strand, within ABID97_RS06705at 1413.613 kb on - strand, within ABID97_RS06705at 1413.687 kb on + strand, within ABID97_RS06705at 1413.687 kb on + strand, within ABID97_RS06705at 1413.873 kb on + strand, within ABID97_RS06705at 1413.873 kb on + strand, within ABID97_RS06705at 1413.873 kb on + strand, within ABID97_RS06705at 1413.873 kb on + strand, within ABID97_RS06705at 1413.874 kb on - strand, within ABID97_RS06705at 1413.874 kb on - strand, within ABID97_RS06705at 1413.909 kb on + strand, within ABID97_RS06705at 1413.910 kb on - strand, within ABID97_RS06705at 1414.537 kb on + strandat 1414.630 kb on + strandat 1414.630 kb on + strandat 1414.631 kb on - strandat 1414.631 kb on - strandat 1414.631 kb on - strandat 1414.631 kb on - strandat 1414.785 kb on - strand, within ABID97_RS06715at 1414.981 kb on + strand, within ABID97_RS06715at 1414.981 kb on + strand, within ABID97_RS06715at 1414.982 kb on - strand, within ABID97_RS06715at 1415.003 kb on - strand, within ABID97_RS06715at 1415.058 kb on + strand, within ABID97_RS06715at 1415.058 kb on + strand, within ABID97_RS06715at 1415.059 kb on - strand, within ABID97_RS06715

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
1,413,204 + -1.0
1,413,236 + +0.4
1,413,240 + +0.0
1,413,240 + +0.1
1,413,240 + -0.8
1,413,241 - +0.2
1,413,612 + ABID97_RS06705 0.40 -0.4
1,413,612 + ABID97_RS06705 0.40 -0.1
1,413,613 - ABID97_RS06705 0.40 +2.0
1,413,687 + ABID97_RS06705 0.51 -0.6
1,413,687 + ABID97_RS06705 0.51 -0.2
1,413,873 + ABID97_RS06705 0.79 -0.3
1,413,873 + ABID97_RS06705 0.79 +0.7
1,413,873 + ABID97_RS06705 0.79 -0.0
1,413,873 + ABID97_RS06705 0.79 +0.3
1,413,874 - ABID97_RS06705 0.79 +0.4
1,413,874 - ABID97_RS06705 0.79 +0.9
1,413,909 + ABID97_RS06705 0.84 -1.0
1,413,910 - ABID97_RS06705 0.84 -0.2
1,414,537 + +1.0
1,414,630 + +1.1
1,414,630 + -0.4
1,414,631 - -0.9
1,414,631 - +1.2
1,414,631 - +0.3
1,414,631 - +0.1
1,414,785 - ABID97_RS06715 0.14 +0.0
1,414,981 + ABID97_RS06715 0.23 +0.4
1,414,981 + ABID97_RS06715 0.23 +0.2
1,414,982 - ABID97_RS06715 0.23 +1.2
1,415,003 - ABID97_RS06715 0.24 +0.0
1,415,058 + ABID97_RS06715 0.27 -0.5
1,415,058 + ABID97_RS06715 0.27 +2.1
1,415,059 - ABID97_RS06715 0.27 +1.0

Or see this region's nucleotide sequence