Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05635

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05625 and ABID97_RS05630 overlap by 4 nucleotidesABID97_RS05630 and ABID97_RS05635 are separated by 102 nucleotidesABID97_RS05635 and ABID97_RS05640 are separated by 99 nucleotidesABID97_RS05640 and ABID97_RS05645 are separated by 43 nucleotides ABID97_RS05625: ABID97_RS05625 - DMT family transporter, at 1,181,856 to 1,182,809 _RS05625 ABID97_RS05630: ABID97_RS05630 - LysE family translocator, at 1,182,806 to 1,183,405 _RS05630 ABID97_RS05635: ABID97_RS05635 - PLP-dependent aminotransferase family protein, at 1,183,508 to 1,184,923 _RS05635 ABID97_RS05640: ABID97_RS05640 - PhaM family polyhydroxyalkanoate granule multifunctional regulatory protein, at 1,185,023 to 1,185,772 _RS05640 ABID97_RS05645: ABID97_RS05645 - FIST N-terminal domain-containing protein, at 1,185,816 to 1,187,096 _RS05645 Position (kb) 1183 1184 1185Strain fitness (log2 ratio) -1 0 1 2at 1182.523 kb on + strand, within ABID97_RS05625at 1182.524 kb on - strand, within ABID97_RS05625at 1182.809 kb on + strandat 1182.809 kb on + strandat 1182.809 kb on + strandat 1182.809 kb on + strandat 1182.809 kb on + strandat 1182.809 kb on + strandat 1182.924 kb on + strand, within ABID97_RS05630at 1182.924 kb on + strand, within ABID97_RS05630at 1182.924 kb on + strand, within ABID97_RS05630at 1182.924 kb on + strand, within ABID97_RS05630at 1182.925 kb on - strand, within ABID97_RS05630at 1182.925 kb on - strand, within ABID97_RS05630at 1182.925 kb on - strand, within ABID97_RS05630at 1182.925 kb on - strand, within ABID97_RS05630at 1182.925 kb on - strand, within ABID97_RS05630at 1182.948 kb on + strand, within ABID97_RS05630at 1182.949 kb on - strand, within ABID97_RS05630at 1183.092 kb on + strand, within ABID97_RS05630at 1183.161 kb on + strand, within ABID97_RS05630at 1183.410 kb on + strandat 1183.411 kb on - strandat 1183.411 kb on - strandat 1183.472 kb on + strandat 1183.649 kb on + strandat 1183.721 kb on + strand, within ABID97_RS05635at 1183.722 kb on - strand, within ABID97_RS05635at 1183.722 kb on - strand, within ABID97_RS05635at 1183.722 kb on - strand, within ABID97_RS05635at 1184.247 kb on - strand, within ABID97_RS05635at 1184.247 kb on - strand, within ABID97_RS05635at 1184.390 kb on + strand, within ABID97_RS05635at 1184.390 kb on + strand, within ABID97_RS05635at 1184.390 kb on + strand, within ABID97_RS05635at 1184.390 kb on + strand, within ABID97_RS05635at 1184.391 kb on - strand, within ABID97_RS05635at 1184.391 kb on - strand, within ABID97_RS05635at 1184.391 kb on - strand, within ABID97_RS05635at 1184.391 kb on - strand, within ABID97_RS05635at 1184.391 kb on - strand, within ABID97_RS05635at 1184.391 kb on - strand, within ABID97_RS05635at 1184.391 kb on - strand, within ABID97_RS05635at 1184.391 kb on - strand, within ABID97_RS05635at 1184.391 kb on - strand, within ABID97_RS05635at 1184.456 kb on + strand, within ABID97_RS05635at 1184.456 kb on + strand, within ABID97_RS05635at 1184.456 kb on + strand, within ABID97_RS05635at 1184.456 kb on + strand, within ABID97_RS05635at 1184.456 kb on + strand, within ABID97_RS05635at 1184.456 kb on + strand, within ABID97_RS05635at 1184.456 kb on + strand, within ABID97_RS05635at 1184.456 kb on + strand, within ABID97_RS05635at 1184.456 kb on + strand, within ABID97_RS05635at 1184.457 kb on - strand, within ABID97_RS05635at 1184.457 kb on - strand, within ABID97_RS05635at 1184.457 kb on - strand, within ABID97_RS05635at 1184.457 kb on - strand, within ABID97_RS05635at 1184.457 kb on - strand, within ABID97_RS05635at 1184.457 kb on - strand, within ABID97_RS05635at 1184.457 kb on - strand, within ABID97_RS05635at 1184.457 kb on - strand, within ABID97_RS05635at 1184.457 kb on - strand, within ABID97_RS05635at 1184.457 kb on - strand, within ABID97_RS05635at 1184.457 kb on - strand, within ABID97_RS05635at 1184.457 kb on - strand, within ABID97_RS05635at 1184.457 kb on - strand, within ABID97_RS05635at 1184.457 kb on - strand, within ABID97_RS05635at 1184.795 kb on + strandat 1184.795 kb on + strandat 1184.974 kb on - strandat 1184.974 kb on - strandat 1184.983 kb on + strandat 1184.983 kb on + strandat 1184.984 kb on - strandat 1185.221 kb on + strand, within ABID97_RS05640at 1185.328 kb on + strand, within ABID97_RS05640at 1185.649 kb on - strand, within ABID97_RS05640at 1185.915 kb on + strandat 1185.916 kb on - strandat 1185.916 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,182,523 + ABID97_RS05625 0.70 +0.9
1,182,524 - ABID97_RS05625 0.70 +1.6
1,182,809 + -0.1
1,182,809 + +0.7
1,182,809 + +1.0
1,182,809 + +0.1
1,182,809 + +0.5
1,182,809 + +0.4
1,182,924 + ABID97_RS05630 0.20 +0.0
1,182,924 + ABID97_RS05630 0.20 +0.9
1,182,924 + ABID97_RS05630 0.20 +0.7
1,182,924 + ABID97_RS05630 0.20 -0.5
1,182,925 - ABID97_RS05630 0.20 +0.7
1,182,925 - ABID97_RS05630 0.20 +1.4
1,182,925 - ABID97_RS05630 0.20 +1.2
1,182,925 - ABID97_RS05630 0.20 +1.1
1,182,925 - ABID97_RS05630 0.20 +1.0
1,182,948 + ABID97_RS05630 0.24 +1.1
1,182,949 - ABID97_RS05630 0.24 +1.6
1,183,092 + ABID97_RS05630 0.48 -0.1
1,183,161 + ABID97_RS05630 0.59 +0.8
1,183,410 + -0.1
1,183,411 - +2.5
1,183,411 - +1.2
1,183,472 + +0.1
1,183,649 + -0.8
1,183,721 + ABID97_RS05635 0.15 +0.3
1,183,722 - ABID97_RS05635 0.15 +0.8
1,183,722 - ABID97_RS05635 0.15 +0.6
1,183,722 - ABID97_RS05635 0.15 +2.2
1,184,247 - ABID97_RS05635 0.52 -0.5
1,184,247 - ABID97_RS05635 0.52 +0.3
1,184,390 + ABID97_RS05635 0.62 +0.5
1,184,390 + ABID97_RS05635 0.62 -0.5
1,184,390 + ABID97_RS05635 0.62 +0.6
1,184,390 + ABID97_RS05635 0.62 +0.4
1,184,391 - ABID97_RS05635 0.62 +0.4
1,184,391 - ABID97_RS05635 0.62 +1.1
1,184,391 - ABID97_RS05635 0.62 +0.0
1,184,391 - ABID97_RS05635 0.62 +1.3
1,184,391 - ABID97_RS05635 0.62 +0.1
1,184,391 - ABID97_RS05635 0.62 -0.1
1,184,391 - ABID97_RS05635 0.62 -0.2
1,184,391 - ABID97_RS05635 0.62 +1.0
1,184,391 - ABID97_RS05635 0.62 -0.4
1,184,456 + ABID97_RS05635 0.67 +1.2
1,184,456 + ABID97_RS05635 0.67 -0.8
1,184,456 + ABID97_RS05635 0.67 +0.3
1,184,456 + ABID97_RS05635 0.67 +0.3
1,184,456 + ABID97_RS05635 0.67 -0.1
1,184,456 + ABID97_RS05635 0.67 +0.3
1,184,456 + ABID97_RS05635 0.67 +0.4
1,184,456 + ABID97_RS05635 0.67 -0.2
1,184,456 + ABID97_RS05635 0.67 +0.2
1,184,457 - ABID97_RS05635 0.67 +0.4
1,184,457 - ABID97_RS05635 0.67 +0.3
1,184,457 - ABID97_RS05635 0.67 +0.2
1,184,457 - ABID97_RS05635 0.67 -0.6
1,184,457 - ABID97_RS05635 0.67 +0.4
1,184,457 - ABID97_RS05635 0.67 +0.6
1,184,457 - ABID97_RS05635 0.67 -0.4
1,184,457 - ABID97_RS05635 0.67 +0.5
1,184,457 - ABID97_RS05635 0.67 -0.3
1,184,457 - ABID97_RS05635 0.67 +0.3
1,184,457 - ABID97_RS05635 0.67 +1.0
1,184,457 - ABID97_RS05635 0.67 +0.1
1,184,457 - ABID97_RS05635 0.67 +0.4
1,184,457 - ABID97_RS05635 0.67 -0.1
1,184,795 + -0.2
1,184,795 + +0.1
1,184,974 - -0.3
1,184,974 - -0.4
1,184,983 + -0.0
1,184,983 + -0.2
1,184,984 - +0.4
1,185,221 + ABID97_RS05640 0.26 -0.5
1,185,328 + ABID97_RS05640 0.41 -0.9
1,185,649 - ABID97_RS05640 0.83 +0.1
1,185,915 + +0.2
1,185,916 - -1.1
1,185,916 - +0.1

Or see this region's nucleotide sequence