Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05585 and ABID97_RS05590 are separated by 13 nucleotides ABID97_RS05590 and ABID97_RS05595 are separated by 5 nucleotides ABID97_RS05595 and ABID97_RS05600 are separated by 10 nucleotides ABID97_RS05600 and ABID97_RS05605 are separated by 5 nucleotides
ABID97_RS05585: ABID97_RS05585 - threonine dehydratase, at 1,175,366 to 1,176,343
_RS05585
ABID97_RS05590: ABID97_RS05590 - LysE family translocator, at 1,176,357 to 1,176,989
_RS05590
ABID97_RS05595: ABID97_RS05595 - VOC family protein, at 1,176,995 to 1,177,687
_RS05595
ABID97_RS05600: ABID97_RS05600 - PhzF family phenazine biosynthesis protein, at 1,177,698 to 1,178,624
_RS05600
ABID97_RS05605: ABID97_RS05605 - glutathione S-transferase, at 1,178,630 to 1,179,271
_RS05605
Position (kb) 1176
1177
1178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1176.168 kb on + strand, within ABID97_RS05585 at 1176.169 kb on - strand, within ABID97_RS05585 at 1176.169 kb on - strand, within ABID97_RS05585 at 1176.359 kb on - strand at 1176.359 kb on - strand at 1176.418 kb on + strand at 1176.419 kb on - strand at 1176.419 kb on - strand at 1176.598 kb on + strand, within ABID97_RS05590 at 1176.598 kb on + strand, within ABID97_RS05590 at 1176.598 kb on + strand, within ABID97_RS05590 at 1176.598 kb on + strand, within ABID97_RS05590 at 1176.598 kb on + strand, within ABID97_RS05590 at 1176.743 kb on - strand, within ABID97_RS05590 at 1176.910 kb on + strand, within ABID97_RS05590 at 1176.910 kb on + strand, within ABID97_RS05590 at 1176.910 kb on + strand, within ABID97_RS05590 at 1176.910 kb on + strand, within ABID97_RS05590 at 1176.910 kb on + strand, within ABID97_RS05590 at 1176.910 kb on + strand, within ABID97_RS05590 at 1176.910 kb on + strand, within ABID97_RS05590 at 1176.910 kb on + strand, within ABID97_RS05590 at 1176.911 kb on - strand, within ABID97_RS05590 at 1176.911 kb on - strand, within ABID97_RS05590 at 1176.911 kb on - strand, within ABID97_RS05590 at 1176.911 kb on - strand, within ABID97_RS05590 at 1177.231 kb on - strand, within ABID97_RS05595 at 1177.231 kb on - strand, within ABID97_RS05595 at 1177.518 kb on + strand, within ABID97_RS05595 at 1177.519 kb on - strand, within ABID97_RS05595 at 1177.519 kb on - strand, within ABID97_RS05595 at 1177.699 kb on + strand at 1177.823 kb on - strand, within ABID97_RS05600 at 1178.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,176,168 + ABID97_RS05585 0.82 +0.5 1,176,169 - ABID97_RS05585 0.82 +0.9 1,176,169 - ABID97_RS05585 0.82 -0.0 1,176,359 - -0.2 1,176,359 - -1.4 1,176,418 + +0.4 1,176,419 - +0.6 1,176,419 - -1.1 1,176,598 + ABID97_RS05590 0.38 -2.8 1,176,598 + ABID97_RS05590 0.38 +0.5 1,176,598 + ABID97_RS05590 0.38 -0.0 1,176,598 + ABID97_RS05590 0.38 +0.6 1,176,598 + ABID97_RS05590 0.38 -1.5 1,176,743 - ABID97_RS05590 0.61 -0.5 1,176,910 + ABID97_RS05590 0.87 +0.2 1,176,910 + ABID97_RS05590 0.87 +0.3 1,176,910 + ABID97_RS05590 0.87 -0.1 1,176,910 + ABID97_RS05590 0.87 +0.6 1,176,910 + ABID97_RS05590 0.87 +0.2 1,176,910 + ABID97_RS05590 0.87 +0.5 1,176,910 + ABID97_RS05590 0.87 +0.5 1,176,910 + ABID97_RS05590 0.87 +0.4 1,176,911 - ABID97_RS05590 0.88 +1.1 1,176,911 - ABID97_RS05590 0.88 +0.3 1,176,911 - ABID97_RS05590 0.88 +0.0 1,176,911 - ABID97_RS05590 0.88 +0.2 1,177,231 - ABID97_RS05595 0.34 -1.0 1,177,231 - ABID97_RS05595 0.34 -0.2 1,177,518 + ABID97_RS05595 0.75 +0.7 1,177,519 - ABID97_RS05595 0.76 -2.0 1,177,519 - ABID97_RS05595 0.76 +0.6 1,177,699 + +1.8 1,177,823 - ABID97_RS05600 0.13 -0.9 1,178,576 - -0.6
Or see this region's nucleotide sequence