Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03390 and ABID97_RS03395 are separated by 40 nucleotides ABID97_RS03395 and ABID97_RS03400 are separated by 294 nucleotides
ABID97_RS03390: ABID97_RS03390 - S41 family peptidase, at 686,885 to 688,492
_RS03390
ABID97_RS03395: ABID97_RS03395 - DNA helicase RecQ, at 688,533 to 690,428
_RS03395
ABID97_RS03400: ABID97_RS03400 - ABC transporter substrate-binding protein, at 690,723 to 691,691
_RS03400
Position (kb) 688
689
690
691 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 687.995 kb on + strand, within ABID97_RS03390 at 687.995 kb on + strand, within ABID97_RS03390 at 687.995 kb on + strand, within ABID97_RS03390 at 687.996 kb on - strand, within ABID97_RS03390 at 688.196 kb on + strand, within ABID97_RS03390 at 688.196 kb on + strand, within ABID97_RS03390 at 688.427 kb on + strand at 688.428 kb on - strand at 688.678 kb on + strand at 688.678 kb on + strand at 689.116 kb on + strand, within ABID97_RS03395 at 689.116 kb on + strand, within ABID97_RS03395 at 689.116 kb on + strand, within ABID97_RS03395 at 689.117 kb on - strand, within ABID97_RS03395 at 689.117 kb on - strand, within ABID97_RS03395 at 689.368 kb on + strand, within ABID97_RS03395 at 689.369 kb on - strand, within ABID97_RS03395 at 689.426 kb on - strand, within ABID97_RS03395 at 689.428 kb on + strand, within ABID97_RS03395 at 689.428 kb on + strand, within ABID97_RS03395 at 689.429 kb on - strand, within ABID97_RS03395 at 689.662 kb on + strand, within ABID97_RS03395 at 689.663 kb on - strand, within ABID97_RS03395 at 689.663 kb on - strand, within ABID97_RS03395 at 689.746 kb on + strand, within ABID97_RS03395 at 689.747 kb on - strand, within ABID97_RS03395 at 689.747 kb on - strand, within ABID97_RS03395 at 689.747 kb on - strand, within ABID97_RS03395 at 690.044 kb on - strand, within ABID97_RS03395 at 690.245 kb on - strand at 690.553 kb on + strand at 690.619 kb on + strand at 690.623 kb on + strand at 691.054 kb on - strand, within ABID97_RS03400 at 691.149 kb on + strand, within ABID97_RS03400 at 691.275 kb on + strand, within ABID97_RS03400 at 691.275 kb on + strand, within ABID97_RS03400 at 691.275 kb on + strand, within ABID97_RS03400 at 691.276 kb on - strand, within ABID97_RS03400 at 691.276 kb on - strand, within ABID97_RS03400 at 691.276 kb on - strand, within ABID97_RS03400
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 687,995 + ABID97_RS03390 0.69 -1.0 687,995 + ABID97_RS03390 0.69 -0.0 687,995 + ABID97_RS03390 0.69 -1.1 687,996 - ABID97_RS03390 0.69 +0.3 688,196 + ABID97_RS03390 0.82 -0.5 688,196 + ABID97_RS03390 0.82 +0.4 688,427 + -0.4 688,428 - +0.1 688,678 + -0.2 688,678 + +0.6 689,116 + ABID97_RS03395 0.31 +0.8 689,116 + ABID97_RS03395 0.31 +1.0 689,116 + ABID97_RS03395 0.31 +0.9 689,117 - ABID97_RS03395 0.31 +0.8 689,117 - ABID97_RS03395 0.31 +1.0 689,368 + ABID97_RS03395 0.44 +1.0 689,369 - ABID97_RS03395 0.44 +0.4 689,426 - ABID97_RS03395 0.47 +1.5 689,428 + ABID97_RS03395 0.47 +1.3 689,428 + ABID97_RS03395 0.47 +1.2 689,429 - ABID97_RS03395 0.47 +1.2 689,662 + ABID97_RS03395 0.60 +1.8 689,663 - ABID97_RS03395 0.60 +0.4 689,663 - ABID97_RS03395 0.60 -0.5 689,746 + ABID97_RS03395 0.64 +0.8 689,747 - ABID97_RS03395 0.64 +0.6 689,747 - ABID97_RS03395 0.64 +0.3 689,747 - ABID97_RS03395 0.64 +1.4 690,044 - ABID97_RS03395 0.80 +0.5 690,245 - +0.6 690,553 + +3.4 690,619 + -0.6 690,623 + -0.3 691,054 - ABID97_RS03400 0.34 -5.2 691,149 + ABID97_RS03400 0.44 -4.5 691,275 + ABID97_RS03400 0.57 -3.9 691,275 + ABID97_RS03400 0.57 -0.5 691,275 + ABID97_RS03400 0.57 -3.0 691,276 - ABID97_RS03400 0.57 -3.3 691,276 - ABID97_RS03400 0.57 -1.3 691,276 - ABID97_RS03400 0.57 -3.5
Or see this region's nucleotide sequence