Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03300

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03290 and ABID97_RS03295 are separated by 15 nucleotidesABID97_RS03295 and ABID97_RS03300 are separated by 56 nucleotidesABID97_RS03300 and ABID97_RS03305 overlap by 4 nucleotidesABID97_RS03305 and ABID97_RS03310 are separated by 65 nucleotides ABID97_RS03290: ABID97_RS03290 - LysR family transcriptional regulator, at 664,939 to 665,829 _RS03290 ABID97_RS03295: ABID97_RS03295 - hypothetical protein, at 665,845 to 666,345 _RS03295 ABID97_RS03300: ABID97_RS03300 - glutaminase, at 666,402 to 667,340 _RS03300 ABID97_RS03305: ABID97_RS03305 - DMT family transporter, at 667,337 to 668,236 _RS03305 ABID97_RS03310: ABID97_RS03310 - BON domain-containing protein, at 668,302 to 668,799 _RS03310 Position (kb) 666 667 668Strain fitness (log2 ratio) -1 0 1 2at 665.545 kb on + strand, within ABID97_RS03290at 665.546 kb on - strand, within ABID97_RS03290at 665.546 kb on - strand, within ABID97_RS03290at 665.611 kb on + strand, within ABID97_RS03290at 665.612 kb on - strand, within ABID97_RS03290at 666.598 kb on + strand, within ABID97_RS03300at 666.598 kb on + strand, within ABID97_RS03300at 666.599 kb on - strand, within ABID97_RS03300at 666.599 kb on - strand, within ABID97_RS03300at 666.599 kb on - strand, within ABID97_RS03300at 666.599 kb on - strand, within ABID97_RS03300at 666.599 kb on - strand, within ABID97_RS03300at 666.757 kb on + strand, within ABID97_RS03300at 666.757 kb on + strand, within ABID97_RS03300at 667.252 kb on + strandat 667.252 kb on + strandat 667.252 kb on + strandat 667.252 kb on + strandat 667.252 kb on + strandat 667.253 kb on - strandat 667.253 kb on - strandat 667.253 kb on - strandat 667.253 kb on - strandat 667.590 kb on + strand, within ABID97_RS03305at 667.591 kb on - strand, within ABID97_RS03305at 667.591 kb on - strand, within ABID97_RS03305at 667.662 kb on + strand, within ABID97_RS03305at 667.662 kb on + strand, within ABID97_RS03305at 667.663 kb on - strand, within ABID97_RS03305at 667.921 kb on - strand, within ABID97_RS03305at 667.921 kb on - strand, within ABID97_RS03305at 667.921 kb on - strand, within ABID97_RS03305at 667.968 kb on + strand, within ABID97_RS03305at 667.968 kb on + strand, within ABID97_RS03305at 667.969 kb on - strand, within ABID97_RS03305at 667.969 kb on - strand, within ABID97_RS03305at 667.969 kb on - strand, within ABID97_RS03305at 667.969 kb on - strand, within ABID97_RS03305at 667.969 kb on - strand, within ABID97_RS03305at 667.969 kb on - strand, within ABID97_RS03305at 667.969 kb on - strand, within ABID97_RS03305

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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665,545 + ABID97_RS03290 0.68 -0.4
665,546 - ABID97_RS03290 0.68 -1.3
665,546 - ABID97_RS03290 0.68 -0.6
665,611 + ABID97_RS03290 0.75 -1.1
665,612 - ABID97_RS03290 0.76 -1.0
666,598 + ABID97_RS03300 0.21 -0.5
666,598 + ABID97_RS03300 0.21 -0.4
666,599 - ABID97_RS03300 0.21 +2.5
666,599 - ABID97_RS03300 0.21 +1.2
666,599 - ABID97_RS03300 0.21 +1.9
666,599 - ABID97_RS03300 0.21 +0.1
666,599 - ABID97_RS03300 0.21 +0.6
666,757 + ABID97_RS03300 0.38 +1.0
666,757 + ABID97_RS03300 0.38 -0.3
667,252 + -0.2
667,252 + -0.5
667,252 + -1.3
667,252 + -0.2
667,252 + +0.7
667,253 - +0.3
667,253 - +0.3
667,253 - +0.1
667,253 - -0.0
667,590 + ABID97_RS03305 0.28 -1.7
667,591 - ABID97_RS03305 0.28 +1.1
667,591 - ABID97_RS03305 0.28 -0.2
667,662 + ABID97_RS03305 0.36 -1.2
667,662 + ABID97_RS03305 0.36 +1.1
667,663 - ABID97_RS03305 0.36 -0.1
667,921 - ABID97_RS03305 0.65 +0.2
667,921 - ABID97_RS03305 0.65 +0.6
667,921 - ABID97_RS03305 0.65 +0.5
667,968 + ABID97_RS03305 0.70 -0.2
667,968 + ABID97_RS03305 0.70 +0.3
667,969 - ABID97_RS03305 0.70 -0.1
667,969 - ABID97_RS03305 0.70 +0.0
667,969 - ABID97_RS03305 0.70 +0.2
667,969 - ABID97_RS03305 0.70 +0.4
667,969 - ABID97_RS03305 0.70 +0.5
667,969 - ABID97_RS03305 0.70 +0.9
667,969 - ABID97_RS03305 0.70 +0.3

Or see this region's nucleotide sequence