Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03205 and ABID97_RS03210 are separated by 73 nucleotides ABID97_RS03210 and ABID97_RS03215 are separated by 16 nucleotides ABID97_RS03215 and ABID97_RS03220 overlap by 4 nucleotides
ABID97_RS03205: ABID97_RS03205 - acyl-CoA dehydrogenase, at 649,786 to 650,985
_RS03205
ABID97_RS03210: ABID97_RS03210 - CaiB/BaiF CoA-transferase family protein, at 651,059 to 652,297
_RS03210
ABID97_RS03215: ABID97_RS03215 - VOC family protein, at 652,314 to 652,754
_RS03215
ABID97_RS03220: ABID97_RS03220 - CopD family protein, at 652,751 to 653,209
_RS03220
Position (kb) 651
652
653 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 650.557 kb on + strand, within ABID97_RS03205 at 650.617 kb on + strand, within ABID97_RS03205 at 650.618 kb on - strand, within ABID97_RS03205 at 650.911 kb on + strand at 650.911 kb on + strand at 650.911 kb on + strand at 650.912 kb on - strand at 650.912 kb on - strand at 650.912 kb on - strand at 650.912 kb on - strand at 651.052 kb on + strand at 651.052 kb on + strand at 651.053 kb on - strand at 651.264 kb on - strand, within ABID97_RS03210 at 651.264 kb on - strand, within ABID97_RS03210 at 651.264 kb on - strand, within ABID97_RS03210 at 651.264 kb on - strand, within ABID97_RS03210 at 651.449 kb on + strand, within ABID97_RS03210 at 651.450 kb on - strand, within ABID97_RS03210 at 651.623 kb on + strand, within ABID97_RS03210 at 651.624 kb on - strand, within ABID97_RS03210 at 652.407 kb on + strand, within ABID97_RS03215 at 652.407 kb on + strand, within ABID97_RS03215 at 652.408 kb on - strand, within ABID97_RS03215 at 652.692 kb on + strand, within ABID97_RS03215 at 652.692 kb on + strand, within ABID97_RS03215 at 652.693 kb on - strand, within ABID97_RS03215 at 652.752 kb on + strand at 652.753 kb on - strand at 652.757 kb on - strand at 652.757 kb on - strand at 652.911 kb on + strand, within ABID97_RS03220 at 652.911 kb on + strand, within ABID97_RS03220 at 652.911 kb on + strand, within ABID97_RS03220 at 652.911 kb on + strand, within ABID97_RS03220 at 652.911 kb on + strand, within ABID97_RS03220 at 652.911 kb on + strand, within ABID97_RS03220 at 652.911 kb on + strand, within ABID97_RS03220 at 652.911 kb on + strand, within ABID97_RS03220 at 652.911 kb on + strand, within ABID97_RS03220 at 652.911 kb on + strand, within ABID97_RS03220 at 652.912 kb on - strand, within ABID97_RS03220 at 652.912 kb on - strand, within ABID97_RS03220 at 652.912 kb on - strand, within ABID97_RS03220 at 652.912 kb on - strand, within ABID97_RS03220 at 652.912 kb on - strand, within ABID97_RS03220 at 652.912 kb on - strand, within ABID97_RS03220 at 652.917 kb on + strand, within ABID97_RS03220 at 652.917 kb on + strand, within ABID97_RS03220 at 652.917 kb on + strand, within ABID97_RS03220 at 652.917 kb on + strand, within ABID97_RS03220 at 652.917 kb on + strand, within ABID97_RS03220 at 652.917 kb on + strand, within ABID97_RS03220 at 652.917 kb on + strand, within ABID97_RS03220 at 652.917 kb on + strand, within ABID97_RS03220 at 652.917 kb on + strand, within ABID97_RS03220 at 652.918 kb on - strand, within ABID97_RS03220 at 652.918 kb on - strand, within ABID97_RS03220 at 652.918 kb on - strand, within ABID97_RS03220 at 652.918 kb on - strand, within ABID97_RS03220 at 652.918 kb on - strand, within ABID97_RS03220 at 652.918 kb on - strand, within ABID97_RS03220 at 652.918 kb on - strand, within ABID97_RS03220 at 652.918 kb on - strand, within ABID97_RS03220
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 650,557 + ABID97_RS03205 0.64 -0.3 650,617 + ABID97_RS03205 0.69 +0.5 650,618 - ABID97_RS03205 0.69 -0.5 650,911 + -1.2 650,911 + -1.8 650,911 + -1.5 650,912 - -0.9 650,912 - -2.2 650,912 - -0.9 650,912 - -1.6 651,052 + +0.5 651,052 + +0.6 651,053 - -0.4 651,264 - ABID97_RS03210 0.17 -0.9 651,264 - ABID97_RS03210 0.17 -0.7 651,264 - ABID97_RS03210 0.17 -0.7 651,264 - ABID97_RS03210 0.17 -1.4 651,449 + ABID97_RS03210 0.31 -0.8 651,450 - ABID97_RS03210 0.32 +0.6 651,623 + ABID97_RS03210 0.46 -0.2 651,624 - ABID97_RS03210 0.46 +0.5 652,407 + ABID97_RS03215 0.21 -0.6 652,407 + ABID97_RS03215 0.21 -0.0 652,408 - ABID97_RS03215 0.21 -0.5 652,692 + ABID97_RS03215 0.86 +0.5 652,692 + ABID97_RS03215 0.86 -1.0 652,693 - ABID97_RS03215 0.86 -0.3 652,752 + +3.1 652,753 - -0.5 652,757 - +1.1 652,757 - +0.2 652,911 + ABID97_RS03220 0.35 +0.2 652,911 + ABID97_RS03220 0.35 -0.4 652,911 + ABID97_RS03220 0.35 -0.6 652,911 + ABID97_RS03220 0.35 -1.1 652,911 + ABID97_RS03220 0.35 +0.3 652,911 + ABID97_RS03220 0.35 +0.0 652,911 + ABID97_RS03220 0.35 +0.1 652,911 + ABID97_RS03220 0.35 +1.1 652,911 + ABID97_RS03220 0.35 -1.9 652,911 + ABID97_RS03220 0.35 -0.3 652,912 - ABID97_RS03220 0.35 -0.1 652,912 - ABID97_RS03220 0.35 -0.7 652,912 - ABID97_RS03220 0.35 +0.0 652,912 - ABID97_RS03220 0.35 +0.7 652,912 - ABID97_RS03220 0.35 +0.0 652,912 - ABID97_RS03220 0.35 +0.6 652,917 + ABID97_RS03220 0.36 -1.0 652,917 + ABID97_RS03220 0.36 -1.6 652,917 + ABID97_RS03220 0.36 +0.5 652,917 + ABID97_RS03220 0.36 -0.0 652,917 + ABID97_RS03220 0.36 +1.3 652,917 + ABID97_RS03220 0.36 -1.2 652,917 + ABID97_RS03220 0.36 -0.7 652,917 + ABID97_RS03220 0.36 -0.3 652,917 + ABID97_RS03220 0.36 -0.8 652,918 - ABID97_RS03220 0.36 +0.1 652,918 - ABID97_RS03220 0.36 -0.3 652,918 - ABID97_RS03220 0.36 +0.8 652,918 - ABID97_RS03220 0.36 -0.1 652,918 - ABID97_RS03220 0.36 -0.6 652,918 - ABID97_RS03220 0.36 +0.9 652,918 - ABID97_RS03220 0.36 -0.7 652,918 - ABID97_RS03220 0.36 -0.1
Or see this region's nucleotide sequence