Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02620 and ABID97_RS02625 overlap by 4 nucleotides ABID97_RS02625 and ABID97_RS02630 overlap by 1 nucleotides ABID97_RS02630 and ABID97_RS02635 are separated by 87 nucleotides
ABID97_RS02620: ABID97_RS02620 - LPS export ABC transporter periplasmic protein LptC, at 535,145 to 535,789
_RS02620
ABID97_RS02625: ABID97_RS02625 - HAD hydrolase family protein, at 535,786 to 536,334
_RS02625
ABID97_RS02630: ABID97_RS02630 - KpsF/GutQ family sugar-phosphate isomerase, at 536,334 to 537,332
_RS02630
ABID97_RS02635: ABID97_RS02635 - monovalent cation:proton antiporter-2 (CPA2) family protein, at 537,420 to 539,405
_RS02635
Position (kb) 536
537
538 Strain fitness (log2 ratio) -2
-1
0
1
2 at 535.826 kb on + strand at 535.827 kb on - strand at 535.827 kb on - strand at 535.901 kb on + strand, within ABID97_RS02625 at 535.901 kb on + strand, within ABID97_RS02625 at 535.901 kb on + strand, within ABID97_RS02625 at 535.901 kb on + strand, within ABID97_RS02625 at 535.901 kb on + strand, within ABID97_RS02625 at 535.901 kb on + strand, within ABID97_RS02625 at 535.901 kb on + strand, within ABID97_RS02625 at 535.901 kb on + strand, within ABID97_RS02625 at 535.901 kb on + strand, within ABID97_RS02625 at 535.901 kb on + strand, within ABID97_RS02625 at 535.901 kb on + strand, within ABID97_RS02625 at 535.901 kb on + strand, within ABID97_RS02625 at 535.901 kb on + strand, within ABID97_RS02625 at 535.901 kb on + strand, within ABID97_RS02625 at 535.902 kb on - strand, within ABID97_RS02625 at 535.902 kb on - strand, within ABID97_RS02625 at 535.902 kb on - strand, within ABID97_RS02625 at 535.902 kb on - strand, within ABID97_RS02625 at 535.902 kb on - strand, within ABID97_RS02625 at 535.902 kb on - strand, within ABID97_RS02625 at 535.902 kb on - strand, within ABID97_RS02625 at 535.902 kb on - strand, within ABID97_RS02625 at 537.344 kb on - strand at 537.344 kb on - strand at 537.408 kb on + strand at 537.409 kb on - strand at 537.409 kb on - strand at 537.409 kb on - strand at 537.409 kb on - strand at 537.409 kb on - strand at 537.409 kb on - strand at 537.447 kb on + strand at 537.447 kb on + strand at 537.447 kb on + strand at 537.447 kb on + strand at 537.447 kb on + strand at 537.447 kb on + strand at 537.447 kb on + strand at 537.447 kb on + strand at 537.448 kb on - strand at 537.448 kb on - strand at 537.448 kb on - strand at 537.448 kb on - strand at 537.448 kb on - strand at 537.513 kb on + strand at 537.513 kb on + strand at 537.577 kb on + strand at 537.578 kb on - strand at 537.578 kb on - strand at 538.023 kb on + strand, within ABID97_RS02635 at 538.024 kb on - strand, within ABID97_RS02635 at 538.203 kb on + strand, within ABID97_RS02635 at 538.203 kb on + strand, within ABID97_RS02635 at 538.203 kb on + strand, within ABID97_RS02635 at 538.203 kb on + strand, within ABID97_RS02635 at 538.203 kb on + strand, within ABID97_RS02635 at 538.204 kb on - strand, within ABID97_RS02635 at 538.204 kb on - strand, within ABID97_RS02635 at 538.204 kb on - strand, within ABID97_RS02635 at 538.204 kb on - strand, within ABID97_RS02635 at 538.204 kb on - strand, within ABID97_RS02635 at 538.204 kb on - strand, within ABID97_RS02635
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 535,826 + +0.5 535,827 - -2.6 535,827 - +0.3 535,901 + ABID97_RS02625 0.21 +1.5 535,901 + ABID97_RS02625 0.21 +0.1 535,901 + ABID97_RS02625 0.21 +1.4 535,901 + ABID97_RS02625 0.21 +0.4 535,901 + ABID97_RS02625 0.21 +0.4 535,901 + ABID97_RS02625 0.21 +0.2 535,901 + ABID97_RS02625 0.21 +1.1 535,901 + ABID97_RS02625 0.21 +0.6 535,901 + ABID97_RS02625 0.21 +0.3 535,901 + ABID97_RS02625 0.21 +0.5 535,901 + ABID97_RS02625 0.21 +1.7 535,901 + ABID97_RS02625 0.21 -0.6 535,901 + ABID97_RS02625 0.21 -0.1 535,901 + ABID97_RS02625 0.21 +1.1 535,902 - ABID97_RS02625 0.21 +1.5 535,902 - ABID97_RS02625 0.21 +0.9 535,902 - ABID97_RS02625 0.21 -0.5 535,902 - ABID97_RS02625 0.21 -1.2 535,902 - ABID97_RS02625 0.21 +2.1 535,902 - ABID97_RS02625 0.21 +0.3 535,902 - ABID97_RS02625 0.21 -0.8 535,902 - ABID97_RS02625 0.21 -0.0 537,344 - -1.3 537,344 - -0.6 537,408 + +0.5 537,409 - -0.3 537,409 - -1.3 537,409 - +0.5 537,409 - -2.6 537,409 - -0.7 537,409 - -1.6 537,447 + +0.9 537,447 + -0.1 537,447 + +1.7 537,447 + +0.6 537,447 + +0.0 537,447 + +0.7 537,447 + +0.4 537,447 + +0.1 537,448 - -0.5 537,448 - +0.3 537,448 - +0.2 537,448 - +0.3 537,448 - -0.5 537,513 + +1.2 537,513 + +0.6 537,577 + +1.2 537,578 - +0.4 537,578 - -0.2 538,023 + ABID97_RS02635 0.30 +0.1 538,024 - ABID97_RS02635 0.30 +0.5 538,203 + ABID97_RS02635 0.39 +0.5 538,203 + ABID97_RS02635 0.39 +0.2 538,203 + ABID97_RS02635 0.39 -0.1 538,203 + ABID97_RS02635 0.39 +0.2 538,203 + ABID97_RS02635 0.39 +0.6 538,204 - ABID97_RS02635 0.39 +0.3 538,204 - ABID97_RS02635 0.39 -0.3 538,204 - ABID97_RS02635 0.39 +0.6 538,204 - ABID97_RS02635 0.39 +1.1 538,204 - ABID97_RS02635 0.39 +1.2 538,204 - ABID97_RS02635 0.39 +0.8
Or see this region's nucleotide sequence