Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01695

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01690 and ABID97_RS01695 are separated by 38 nucleotidesABID97_RS01695 and ABID97_RS01700 overlap by 4 nucleotides ABID97_RS01690: ABID97_RS01690 - prolyl oligopeptidase family serine peptidase, at 331,411 to 332,997 _RS01690 ABID97_RS01695: ABID97_RS01695 - L-threonylcarbamoyladenylate synthase, at 333,036 to 334,037 _RS01695 ABID97_RS01700: ABID97_RS01700 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 334,034 to 335,224 _RS01700 Position (kb) 333 334 335Strain fitness (log2 ratio) -2 -1 0 1 2at 332.116 kb on + strand, within ABID97_RS01690at 332.218 kb on + strand, within ABID97_RS01690at 332.218 kb on + strand, within ABID97_RS01690at 332.219 kb on - strand, within ABID97_RS01690at 332.219 kb on - strand, within ABID97_RS01690at 332.305 kb on + strand, within ABID97_RS01690at 332.305 kb on + strand, within ABID97_RS01690at 332.306 kb on - strand, within ABID97_RS01690at 332.306 kb on - strand, within ABID97_RS01690at 332.306 kb on - strand, within ABID97_RS01690at 332.326 kb on + strand, within ABID97_RS01690at 332.327 kb on - strand, within ABID97_RS01690at 332.339 kb on - strand, within ABID97_RS01690at 332.392 kb on + strand, within ABID97_RS01690at 332.392 kb on + strand, within ABID97_RS01690at 332.392 kb on + strand, within ABID97_RS01690at 332.392 kb on + strand, within ABID97_RS01690at 332.392 kb on + strand, within ABID97_RS01690at 332.392 kb on + strand, within ABID97_RS01690at 332.392 kb on + strand, within ABID97_RS01690at 332.392 kb on + strand, within ABID97_RS01690at 332.393 kb on - strand, within ABID97_RS01690at 332.393 kb on - strand, within ABID97_RS01690at 332.393 kb on - strand, within ABID97_RS01690at 332.393 kb on - strand, within ABID97_RS01690at 332.393 kb on - strand, within ABID97_RS01690at 332.393 kb on - strand, within ABID97_RS01690at 332.393 kb on - strand, within ABID97_RS01690at 332.476 kb on + strand, within ABID97_RS01690at 332.477 kb on - strand, within ABID97_RS01690at 332.477 kb on - strand, within ABID97_RS01690at 332.506 kb on + strand, within ABID97_RS01690at 332.507 kb on - strand, within ABID97_RS01690at 332.507 kb on - strand, within ABID97_RS01690at 332.744 kb on - strand, within ABID97_RS01690at 332.818 kb on + strand, within ABID97_RS01690at 332.818 kb on + strand, within ABID97_RS01690at 332.818 kb on + strand, within ABID97_RS01690

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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332,116 + ABID97_RS01690 0.44 +1.7
332,218 + ABID97_RS01690 0.51 +0.7
332,218 + ABID97_RS01690 0.51 -0.2
332,219 - ABID97_RS01690 0.51 -0.4
332,219 - ABID97_RS01690 0.51 -0.1
332,305 + ABID97_RS01690 0.56 +0.3
332,305 + ABID97_RS01690 0.56 -0.3
332,306 - ABID97_RS01690 0.56 -0.2
332,306 - ABID97_RS01690 0.56 +0.9
332,306 - ABID97_RS01690 0.56 -0.8
332,326 + ABID97_RS01690 0.58 -0.0
332,327 - ABID97_RS01690 0.58 +0.1
332,339 - ABID97_RS01690 0.58 -1.7
332,392 + ABID97_RS01690 0.62 +0.5
332,392 + ABID97_RS01690 0.62 -0.2
332,392 + ABID97_RS01690 0.62 +0.5
332,392 + ABID97_RS01690 0.62 -0.2
332,392 + ABID97_RS01690 0.62 -0.4
332,392 + ABID97_RS01690 0.62 -0.1
332,392 + ABID97_RS01690 0.62 +0.6
332,392 + ABID97_RS01690 0.62 +1.6
332,393 - ABID97_RS01690 0.62 +0.1
332,393 - ABID97_RS01690 0.62 +0.3
332,393 - ABID97_RS01690 0.62 -0.1
332,393 - ABID97_RS01690 0.62 +0.5
332,393 - ABID97_RS01690 0.62 +1.8
332,393 - ABID97_RS01690 0.62 -0.8
332,393 - ABID97_RS01690 0.62 -1.8
332,476 + ABID97_RS01690 0.67 -0.4
332,477 - ABID97_RS01690 0.67 -0.8
332,477 - ABID97_RS01690 0.67 +0.4
332,506 + ABID97_RS01690 0.69 +2.0
332,507 - ABID97_RS01690 0.69 +0.3
332,507 - ABID97_RS01690 0.69 -0.9
332,744 - ABID97_RS01690 0.84 -1.1
332,818 + ABID97_RS01690 0.89 +0.6
332,818 + ABID97_RS01690 0.89 -0.2
332,818 + ABID97_RS01690 0.89 +0.4

Or see this region's nucleotide sequence