Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01560 and ABID97_RS01565 are separated by 69 nucleotides ABID97_RS01565 and ABID97_RS01570 are separated by 139 nucleotides ABID97_RS01570 and ABID97_RS01575 are separated by 50 nucleotides
ABID97_RS01560: ABID97_RS01560 - 4-hydroxybenzoate octaprenyltransferase, at 306,448 to 307,308
_RS01560
ABID97_RS01565: ABID97_RS01565 - DNA starvation/stationary phase protection protein, at 307,378 to 307,950
_RS01565
ABID97_RS01570: ABID97_RS01570 - LysR substrate-binding domain-containing protein, at 308,090 to 309,055
_RS01570
ABID97_RS01575: ABID97_RS01575 - ATP-dependent DNA helicase RecG, at 309,106 to 311,220
_RS01575
Position (kb) 308
309
310 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 307.610 kb on + strand, within ABID97_RS01565 at 307.611 kb on - strand, within ABID97_RS01565 at 307.625 kb on + strand, within ABID97_RS01565 at 307.626 kb on - strand, within ABID97_RS01565 at 307.626 kb on - strand, within ABID97_RS01565 at 307.685 kb on + strand, within ABID97_RS01565 at 307.685 kb on + strand, within ABID97_RS01565 at 307.763 kb on + strand, within ABID97_RS01565 at 307.764 kb on - strand, within ABID97_RS01565 at 307.772 kb on + strand, within ABID97_RS01565 at 307.772 kb on + strand, within ABID97_RS01565 at 307.773 kb on - strand, within ABID97_RS01565 at 307.773 kb on - strand, within ABID97_RS01565 at 307.773 kb on - strand, within ABID97_RS01565 at 308.092 kb on - strand at 308.127 kb on + strand at 308.127 kb on + strand at 308.127 kb on + strand at 308.127 kb on + strand at 308.127 kb on + strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.241 kb on + strand, within ABID97_RS01570 at 308.574 kb on + strand, within ABID97_RS01570 at 308.575 kb on - strand, within ABID97_RS01570 at 308.760 kb on + strand, within ABID97_RS01570 at 308.760 kb on + strand, within ABID97_RS01570 at 308.761 kb on - strand, within ABID97_RS01570 at 308.761 kb on - strand, within ABID97_RS01570 at 308.761 kb on - strand, within ABID97_RS01570 at 308.761 kb on - strand, within ABID97_RS01570 at 308.979 kb on + strand at 308.980 kb on - strand at 308.980 kb on - strand at 308.980 kb on - strand at 308.980 kb on - strand at 308.980 kb on - strand at 309.033 kb on + strand at 309.033 kb on + strand at 309.033 kb on + strand at 309.033 kb on + strand at 309.033 kb on + strand at 309.034 kb on - strand at 309.034 kb on - strand at 309.034 kb on - strand at 309.034 kb on - strand at 309.055 kb on + strand at 309.055 kb on + strand at 309.055 kb on + strand at 309.056 kb on - strand at 309.056 kb on - strand at 309.056 kb on - strand at 309.056 kb on - strand at 309.069 kb on + strand at 309.107 kb on + strand at 309.108 kb on - strand at 309.108 kb on - strand at 309.108 kb on - strand at 309.119 kb on + strand at 309.120 kb on - strand at 309.407 kb on + strand, within ABID97_RS01575 at 309.407 kb on + strand, within ABID97_RS01575 at 309.407 kb on + strand, within ABID97_RS01575 at 309.408 kb on - strand, within ABID97_RS01575 at 309.743 kb on + strand, within ABID97_RS01575 at 309.744 kb on - strand, within ABID97_RS01575 at 309.744 kb on - strand, within ABID97_RS01575 at 309.865 kb on + strand, within ABID97_RS01575 at 309.881 kb on + strand, within ABID97_RS01575 at 309.882 kb on - strand, within ABID97_RS01575 at 309.884 kb on + strand, within ABID97_RS01575 at 309.884 kb on + strand, within ABID97_RS01575 at 309.884 kb on + strand, within ABID97_RS01575 at 309.885 kb on - strand, within ABID97_RS01575 at 309.885 kb on - strand, within ABID97_RS01575
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 307,610 + ABID97_RS01565 0.40 +0.5 307,611 - ABID97_RS01565 0.41 -3.8 307,625 + ABID97_RS01565 0.43 -1.2 307,626 - ABID97_RS01565 0.43 -2.0 307,626 - ABID97_RS01565 0.43 -4.7 307,685 + ABID97_RS01565 0.54 -3.8 307,685 + ABID97_RS01565 0.54 -0.5 307,763 + ABID97_RS01565 0.67 -4.0 307,764 - ABID97_RS01565 0.67 -0.5 307,772 + ABID97_RS01565 0.69 -3.2 307,772 + ABID97_RS01565 0.69 -3.2 307,773 - ABID97_RS01565 0.69 -3.7 307,773 - ABID97_RS01565 0.69 -4.0 307,773 - ABID97_RS01565 0.69 -3.9 308,092 - +0.7 308,127 + -2.4 308,127 + -0.3 308,127 + -3.0 308,127 + -3.3 308,127 + -1.1 308,128 - -2.4 308,128 - -3.7 308,128 - -3.4 308,128 - -1.7 308,128 - -3.8 308,128 - -2.4 308,128 - -0.8 308,128 - -1.5 308,128 - -3.3 308,128 - -5.1 308,241 + ABID97_RS01570 0.16 -1.0 308,574 + ABID97_RS01570 0.50 -1.9 308,575 - ABID97_RS01570 0.50 -1.7 308,760 + ABID97_RS01570 0.69 -3.0 308,760 + ABID97_RS01570 0.69 -0.3 308,761 - ABID97_RS01570 0.69 -3.7 308,761 - ABID97_RS01570 0.69 -2.9 308,761 - ABID97_RS01570 0.69 -2.5 308,761 - ABID97_RS01570 0.69 -2.7 308,979 + -2.8 308,980 - +0.5 308,980 - -2.8 308,980 - -2.2 308,980 - -3.3 308,980 - -1.1 309,033 + -5.1 309,033 + -4.2 309,033 + -1.7 309,033 + -2.4 309,033 + -2.6 309,034 - -1.9 309,034 - -2.4 309,034 - +0.5 309,034 - -1.7 309,055 + +1.1 309,055 + +0.5 309,055 + +0.5 309,056 - +1.2 309,056 - +1.5 309,056 - -0.5 309,056 - +1.0 309,069 + +0.2 309,107 + +0.6 309,108 - +2.3 309,108 - +1.1 309,108 - +0.4 309,119 + +1.6 309,120 - +2.0 309,407 + ABID97_RS01575 0.14 -1.0 309,407 + ABID97_RS01575 0.14 -2.0 309,407 + ABID97_RS01575 0.14 +0.2 309,408 - ABID97_RS01575 0.14 +0.8 309,743 + ABID97_RS01575 0.30 -1.4 309,744 - ABID97_RS01575 0.30 -0.7 309,744 - ABID97_RS01575 0.30 -3.7 309,865 + ABID97_RS01575 0.36 -0.3 309,881 + ABID97_RS01575 0.37 +0.9 309,882 - ABID97_RS01575 0.37 -2.4 309,884 + ABID97_RS01575 0.37 -0.8 309,884 + ABID97_RS01575 0.37 -0.6 309,884 + ABID97_RS01575 0.37 -0.6 309,885 - ABID97_RS01575 0.37 +0.0 309,885 - ABID97_RS01575 0.37 +0.3
Or see this region's nucleotide sequence