Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01395 and ABID97_RS01400 are separated by 7 nucleotides ABID97_RS01400 and ABID97_RS01405 are separated by 117 nucleotides ABID97_RS01405 and ABID97_RS01410 are separated by 63 nucleotides
ABID97_RS01395: ABID97_RS01395 - MarR family transcriptional regulator, at 282,494 to 282,916
_RS01395
ABID97_RS01400: ABID97_RS01400 - SDR family oxidoreductase, at 282,924 to 283,685
_RS01400
ABID97_RS01405: ABID97_RS01405 - LysR family transcriptional regulator, at 283,803 to 284,729
_RS01405
ABID97_RS01410: ABID97_RS01410 - tripartite tricarboxylate transporter substrate binding protein, at 284,793 to 285,806
_RS01410
Position (kb) 283
284
285 Strain fitness (log2 ratio) -2
-1
0
1 at 283.201 kb on + strand, within ABID97_RS01400 at 283.555 kb on + strand, within ABID97_RS01400 at 283.556 kb on - strand, within ABID97_RS01400 at 283.556 kb on - strand, within ABID97_RS01400 at 284.163 kb on - strand, within ABID97_RS01405 at 284.622 kb on + strand, within ABID97_RS01405 at 284.622 kb on + strand, within ABID97_RS01405 at 284.623 kb on - strand, within ABID97_RS01405 at 284.727 kb on + strand at 285.072 kb on + strand, within ABID97_RS01410 at 285.073 kb on - strand, within ABID97_RS01410 at 285.073 kb on - strand, within ABID97_RS01410 at 285.241 kb on + strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.259 kb on - strand, within ABID97_RS01410 at 285.375 kb on + strand, within ABID97_RS01410 at 285.375 kb on + strand, within ABID97_RS01410 at 285.376 kb on - strand, within ABID97_RS01410 at 285.376 kb on - strand, within ABID97_RS01410 at 285.376 kb on - strand, within ABID97_RS01410
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 283,201 + ABID97_RS01400 0.36 -1.9 283,555 + ABID97_RS01400 0.83 +0.1 283,556 - ABID97_RS01400 0.83 +0.5 283,556 - ABID97_RS01400 0.83 -0.5 284,163 - ABID97_RS01405 0.39 +0.1 284,622 + ABID97_RS01405 0.88 +0.0 284,622 + ABID97_RS01405 0.88 +0.5 284,623 - ABID97_RS01405 0.88 -0.5 284,727 + -0.6 285,072 + ABID97_RS01410 0.28 +0.3 285,073 - ABID97_RS01410 0.28 +0.5 285,073 - ABID97_RS01410 0.28 +0.5 285,241 + ABID97_RS01410 0.44 -0.7 285,242 - ABID97_RS01410 0.44 -0.4 285,242 - ABID97_RS01410 0.44 +0.6 285,242 - ABID97_RS01410 0.44 -0.6 285,242 - ABID97_RS01410 0.44 -0.4 285,242 - ABID97_RS01410 0.44 +0.2 285,259 - ABID97_RS01410 0.46 -1.5 285,375 + ABID97_RS01410 0.57 -0.2 285,375 + ABID97_RS01410 0.57 -0.0 285,376 - ABID97_RS01410 0.57 +0.5 285,376 - ABID97_RS01410 0.57 -0.1 285,376 - ABID97_RS01410 0.57 +0.7
Or see this region's nucleotide sequence