Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00130

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00120 and ABID97_RS00125 are separated by 86 nucleotidesABID97_RS00125 and ABID97_RS00130 are separated by 62 nucleotidesABID97_RS00130 and ABID97_RS00135 are separated by 120 nucleotides ABID97_RS00120: ABID97_RS00120 - AMP-binding protein, at 27,746 to 29,359 _RS00120 ABID97_RS00125: ABID97_RS00125 - TetR/AcrR family transcriptional regulator, at 29,446 to 30,132 _RS00125 ABID97_RS00130: ABID97_RS00130 - branched-chain amino acid ABC transporter substrate-binding protein, at 30,195 to 31,460 _RS00130 ABID97_RS00135: ABID97_RS00135 - cytochrome P450, at 31,581 to 34,805 _RS00135 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 29.312 kb on + strandat 29.313 kb on - strandat 29.442 kb on - strandat 29.451 kb on + strandat 29.452 kb on - strandat 29.452 kb on - strandat 29.453 kb on + strandat 29.608 kb on + strand, within ABID97_RS00125at 29.609 kb on - strand, within ABID97_RS00125at 29.668 kb on + strand, within ABID97_RS00125at 29.669 kb on - strand, within ABID97_RS00125at 29.669 kb on - strand, within ABID97_RS00125at 29.669 kb on - strand, within ABID97_RS00125at 29.671 kb on + strand, within ABID97_RS00125at 29.672 kb on - strand, within ABID97_RS00125at 29.674 kb on + strand, within ABID97_RS00125at 29.674 kb on - strand, within ABID97_RS00125at 29.675 kb on - strand, within ABID97_RS00125at 29.870 kb on - strand, within ABID97_RS00125at 29.881 kb on + strand, within ABID97_RS00125at 29.881 kb on + strand, within ABID97_RS00125at 29.881 kb on + strand, within ABID97_RS00125at 29.882 kb on - strand, within ABID97_RS00125at 30.026 kb on - strand, within ABID97_RS00125at 30.026 kb on - strand, within ABID97_RS00125at 30.285 kb on + strandat 30.297 kb on + strandat 30.699 kb on + strand, within ABID97_RS00130at 30.699 kb on + strand, within ABID97_RS00130at 30.699 kb on + strand, within ABID97_RS00130at 30.699 kb on + strand, within ABID97_RS00130at 30.699 kb on + strand, within ABID97_RS00130at 30.700 kb on - strand, within ABID97_RS00130at 30.733 kb on - strand, within ABID97_RS00130at 30.733 kb on - strand, within ABID97_RS00130at 30.871 kb on - strand, within ABID97_RS00130at 30.982 kb on - strand, within ABID97_RS00130at 31.119 kb on + strand, within ABID97_RS00130at 31.120 kb on - strand, within ABID97_RS00130at 31.120 kb on - strand, within ABID97_RS00130at 31.120 kb on - strand, within ABID97_RS00130at 31.402 kb on - strandat 31.484 kb on - strandat 31.537 kb on - strandat 31.537 kb on - strandat 31.935 kb on + strand, within ABID97_RS00135at 32.036 kb on + strand, within ABID97_RS00135at 32.037 kb on - strand, within ABID97_RS00135at 32.037 kb on - strand, within ABID97_RS00135at 32.220 kb on + strand, within ABID97_RS00135at 32.221 kb on - strand, within ABID97_RS00135at 32.221 kb on - strand, within ABID97_RS00135at 32.221 kb on - strand, within ABID97_RS00135at 32.304 kb on + strand, within ABID97_RS00135at 32.304 kb on + strand, within ABID97_RS00135at 32.304 kb on + strand, within ABID97_RS00135at 32.305 kb on - strand, within ABID97_RS00135at 32.305 kb on - strand, within ABID97_RS00135at 32.305 kb on - strand, within ABID97_RS00135at 32.430 kb on + strand, within ABID97_RS00135at 32.431 kb on - strand, within ABID97_RS00135at 32.431 kb on - strand, within ABID97_RS00135

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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29,312 + +0.6
29,313 - +0.1
29,442 - -0.3
29,451 + +0.0
29,452 - +1.1
29,452 - -0.4
29,453 + +0.0
29,608 + ABID97_RS00125 0.24 -0.3
29,609 - ABID97_RS00125 0.24 +2.0
29,668 + ABID97_RS00125 0.32 -0.1
29,669 - ABID97_RS00125 0.32 +0.5
29,669 - ABID97_RS00125 0.32 +0.2
29,669 - ABID97_RS00125 0.32 +0.5
29,671 + ABID97_RS00125 0.33 -0.1
29,672 - ABID97_RS00125 0.33 -0.5
29,674 + ABID97_RS00125 0.33 -0.2
29,674 - ABID97_RS00125 0.33 -0.1
29,675 - ABID97_RS00125 0.33 -2.4
29,870 - ABID97_RS00125 0.62 +0.9
29,881 + ABID97_RS00125 0.63 -2.2
29,881 + ABID97_RS00125 0.63 -0.8
29,881 + ABID97_RS00125 0.63 -0.0
29,882 - ABID97_RS00125 0.63 -1.0
30,026 - ABID97_RS00125 0.84 -0.5
30,026 - ABID97_RS00125 0.84 -1.5
30,285 + -0.0
30,297 + +1.6
30,699 + ABID97_RS00130 0.40 -0.2
30,699 + ABID97_RS00130 0.40 +1.0
30,699 + ABID97_RS00130 0.40 -0.4
30,699 + ABID97_RS00130 0.40 -0.2
30,699 + ABID97_RS00130 0.40 -0.1
30,700 - ABID97_RS00130 0.40 +0.4
30,733 - ABID97_RS00130 0.42 -0.2
30,733 - ABID97_RS00130 0.42 -0.1
30,871 - ABID97_RS00130 0.53 -0.8
30,982 - ABID97_RS00130 0.62 +0.1
31,119 + ABID97_RS00130 0.73 +0.2
31,120 - ABID97_RS00130 0.73 -0.0
31,120 - ABID97_RS00130 0.73 +1.5
31,120 - ABID97_RS00130 0.73 -0.2
31,402 - -0.2
31,484 - -0.5
31,537 - +0.2
31,537 - +0.3
31,935 + ABID97_RS00135 0.11 +0.3
32,036 + ABID97_RS00135 0.14 +0.5
32,037 - ABID97_RS00135 0.14 +0.3
32,037 - ABID97_RS00135 0.14 +1.1
32,220 + ABID97_RS00135 0.20 -0.1
32,221 - ABID97_RS00135 0.20 -0.5
32,221 - ABID97_RS00135 0.20 +0.5
32,221 - ABID97_RS00135 0.20 +0.5
32,304 + ABID97_RS00135 0.22 +0.2
32,304 + ABID97_RS00135 0.22 +0.1
32,304 + ABID97_RS00135 0.22 +1.5
32,305 - ABID97_RS00135 0.22 +0.3
32,305 - ABID97_RS00135 0.22 +1.4
32,305 - ABID97_RS00135 0.22 +1.4
32,430 + ABID97_RS00135 0.26 +1.4
32,431 - ABID97_RS00135 0.26 -1.1
32,431 - ABID97_RS00135 0.26 +0.4

Or see this region's nucleotide sequence