Strain Fitness in Escherichia coli BW25113 around b1705

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaroH and ydiE are separated by 131 nucleotidesydiE and ydiU are separated by 3 nucleotides b1704: aroH - 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible (NCBI), at 1,786,459 to 1,787,505 aroH b1705: ydiE - hypothetical protein (NCBI), at 1,787,637 to 1,787,828 ydiE b1706: ydiU - hypothetical protein (NCBI), at 1,787,832 to 1,789,268 ydiU Position (kb) 1787 1788Strain fitness (log2 ratio) -1 0 1at 1786.668 kb on - strand, within aroHat 1786.668 kb on - strand, within aroHat 1786.722 kb on + strand, within aroHat 1786.897 kb on - strand, within aroHat 1787.055 kb on - strand, within aroHat 1787.210 kb on - strand, within aroHat 1787.217 kb on - strand, within aroHat 1787.434 kb on - strandat 1788.003 kb on + strand, within ydiUat 1788.003 kb on + strand, within ydiUat 1788.058 kb on - strand, within ydiUat 1788.058 kb on - strand, within ydiUat 1788.158 kb on - strand, within ydiUat 1788.163 kb on - strand, within ydiUat 1788.163 kb on - strand, within ydiUat 1788.521 kb on - strand, within ydiUat 1788.521 kb on - strand, within ydiUat 1788.760 kb on + strand, within ydiUat 1788.775 kb on - strand, within ydiUat 1788.775 kb on - strand, within ydiU

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,786,668 - aroH b1704 0.20 +0.1
1,786,668 - aroH b1704 0.20 +0.1
1,786,722 + aroH b1704 0.25 +0.1
1,786,897 - aroH b1704 0.42 -0.3
1,787,055 - aroH b1704 0.57 -0.5
1,787,210 - aroH b1704 0.72 +0.2
1,787,217 - aroH b1704 0.72 -0.3
1,787,434 - -1.5
1,788,003 + ydiU b1706 0.12 +0.6
1,788,003 + ydiU b1706 0.12 +0.0
1,788,058 - ydiU b1706 0.16 +0.6
1,788,058 - ydiU b1706 0.16 +0.9
1,788,158 - ydiU b1706 0.23 -0.7
1,788,163 - ydiU b1706 0.23 -0.1
1,788,163 - ydiU b1706 0.23 -0.5
1,788,521 - ydiU b1706 0.48 -0.6
1,788,521 - ydiU b1706 0.48 -0.2
1,788,760 + ydiU b1706 0.65 +0.3
1,788,775 - ydiU b1706 0.66 +0.5
1,788,775 - ydiU b1706 0.66 +0.4

Or see this region's nucleotide sequence