Experiment: Trisodium citrate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25005 and PFLU_RS25010 are separated by 238 nucleotides PFLU_RS25010 and PFLU_RS25015 are separated by 108 nucleotides PFLU_RS25015 and PFLU_RS25020 are separated by 30 nucleotides
PFLU_RS25005: PFLU_RS25005 - methyl-accepting chemotaxis protein, at 5,598,330 to 5,599,541
_RS25005
PFLU_RS25010: PFLU_RS25010 - cupin domain-containing protein, at 5,599,780 to 5,600,160
_RS25010
PFLU_RS25015: PFLU_RS25015 - hypothetical protein, at 5,600,269 to 5,600,553
_RS25015
PFLU_RS25020: PFLU_RS25020 - hypothetical protein, at 5,600,584 to 5,601,480
_RS25020
Position (kb) 5599
5600
5601 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5598.809 kb on + strand, within PFLU_RS25005 at 5598.964 kb on + strand, within PFLU_RS25005 at 5598.964 kb on + strand, within PFLU_RS25005 at 5598.964 kb on + strand, within PFLU_RS25005 at 5598.965 kb on - strand, within PFLU_RS25005 at 5599.131 kb on + strand, within PFLU_RS25005 at 5599.131 kb on + strand, within PFLU_RS25005 at 5599.131 kb on + strand, within PFLU_RS25005 at 5599.131 kb on + strand, within PFLU_RS25005 at 5599.132 kb on - strand, within PFLU_RS25005 at 5599.132 kb on - strand, within PFLU_RS25005 at 5599.132 kb on - strand, within PFLU_RS25005 at 5599.254 kb on + strand, within PFLU_RS25005 at 5599.254 kb on + strand, within PFLU_RS25005 at 5599.254 kb on + strand, within PFLU_RS25005 at 5599.254 kb on + strand, within PFLU_RS25005 at 5599.254 kb on + strand, within PFLU_RS25005 at 5599.255 kb on - strand, within PFLU_RS25005 at 5599.255 kb on - strand, within PFLU_RS25005 at 5599.255 kb on - strand, within PFLU_RS25005 at 5599.281 kb on + strand, within PFLU_RS25005 at 5599.281 kb on + strand, within PFLU_RS25005 at 5599.282 kb on - strand, within PFLU_RS25005 at 5599.282 kb on - strand, within PFLU_RS25005 at 5599.290 kb on - strand, within PFLU_RS25005 at 5599.446 kb on + strand at 5599.502 kb on - strand at 5599.572 kb on + strand at 5599.572 kb on + strand at 5599.572 kb on + strand at 5599.572 kb on + strand at 5599.572 kb on + strand at 5599.572 kb on + strand at 5599.572 kb on + strand at 5599.572 kb on + strand at 5599.573 kb on - strand at 5599.573 kb on - strand at 5599.573 kb on - strand at 5599.573 kb on - strand at 5599.573 kb on - strand at 5599.581 kb on + strand at 5599.581 kb on + strand at 5599.582 kb on - strand at 5599.582 kb on - strand at 5599.582 kb on - strand at 5599.588 kb on + strand at 5599.641 kb on + strand at 5599.641 kb on + strand at 5599.642 kb on - strand at 5599.670 kb on + strand at 5599.670 kb on + strand at 5599.670 kb on + strand at 5599.670 kb on + strand at 5599.676 kb on + strand at 5599.676 kb on + strand at 5599.676 kb on + strand at 5599.676 kb on + strand at 5599.677 kb on - strand at 5599.677 kb on - strand at 5599.677 kb on - strand at 5599.677 kb on - strand at 5599.677 kb on - strand at 5599.677 kb on - strand at 5599.718 kb on + strand at 5599.718 kb on + strand at 5599.718 kb on + strand at 5599.718 kb on + strand at 5599.718 kb on + strand at 5599.718 kb on + strand at 5599.719 kb on - strand at 5599.719 kb on - strand at 5599.733 kb on + strand at 5599.733 kb on + strand at 5599.734 kb on - strand at 5599.734 kb on - strand at 5599.734 kb on - strand at 5599.734 kb on - strand at 5599.761 kb on - strand at 5599.883 kb on - strand, within PFLU_RS25010 at 5600.002 kb on + strand, within PFLU_RS25010 at 5600.002 kb on + strand, within PFLU_RS25010 at 5600.002 kb on + strand, within PFLU_RS25010 at 5600.002 kb on + strand, within PFLU_RS25010 at 5600.002 kb on + strand, within PFLU_RS25010 at 5600.002 kb on + strand, within PFLU_RS25010 at 5600.002 kb on + strand, within PFLU_RS25010 at 5600.003 kb on - strand, within PFLU_RS25010 at 5600.003 kb on - strand, within PFLU_RS25010 at 5600.023 kb on + strand, within PFLU_RS25010 at 5600.023 kb on + strand, within PFLU_RS25010 at 5600.023 kb on + strand, within PFLU_RS25010 at 5600.023 kb on + strand, within PFLU_RS25010 at 5600.023 kb on + strand, within PFLU_RS25010 at 5600.023 kb on + strand, within PFLU_RS25010 at 5600.023 kb on + strand, within PFLU_RS25010 at 5600.023 kb on + strand, within PFLU_RS25010 at 5600.024 kb on - strand, within PFLU_RS25010 at 5600.024 kb on - strand, within PFLU_RS25010 at 5600.024 kb on - strand, within PFLU_RS25010 at 5600.024 kb on - strand, within PFLU_RS25010 at 5600.109 kb on + strand, within PFLU_RS25010 at 5600.133 kb on + strand at 5600.134 kb on - strand at 5600.184 kb on + strand at 5600.184 kb on + strand at 5600.184 kb on + strand at 5600.184 kb on + strand at 5600.184 kb on + strand at 5600.184 kb on + strand at 5600.184 kb on + strand at 5600.185 kb on - strand at 5600.185 kb on - strand at 5600.190 kb on + strand at 5600.270 kb on + strand at 5600.383 kb on + strand, within PFLU_RS25015 at 5600.383 kb on + strand, within PFLU_RS25015 at 5600.383 kb on + strand, within PFLU_RS25015 at 5600.383 kb on + strand, within PFLU_RS25015 at 5600.384 kb on - strand, within PFLU_RS25015 at 5600.384 kb on - strand, within PFLU_RS25015 at 5600.495 kb on - strand, within PFLU_RS25015 at 5600.495 kb on - strand, within PFLU_RS25015 at 5600.495 kb on - strand, within PFLU_RS25015 at 5600.517 kb on + strand, within PFLU_RS25015 at 5600.517 kb on + strand, within PFLU_RS25015 at 5600.518 kb on - strand, within PFLU_RS25015 at 5600.546 kb on + strand at 5600.547 kb on - strand at 5600.559 kb on - strand at 5600.559 kb on - strand at 5600.692 kb on - strand, within PFLU_RS25020 at 5600.692 kb on - strand, within PFLU_RS25020 at 5600.746 kb on - strand, within PFLU_RS25020 at 5600.780 kb on + strand, within PFLU_RS25020 at 5600.780 kb on + strand, within PFLU_RS25020 at 5600.781 kb on - strand, within PFLU_RS25020 at 5600.781 kb on - strand, within PFLU_RS25020 at 5600.972 kb on + strand, within PFLU_RS25020 at 5601.022 kb on - strand, within PFLU_RS25020 at 5601.079 kb on + strand, within PFLU_RS25020 at 5601.083 kb on + strand, within PFLU_RS25020 at 5601.083 kb on + strand, within PFLU_RS25020 at 5601.083 kb on + strand, within PFLU_RS25020 at 5601.083 kb on + strand, within PFLU_RS25020 at 5601.083 kb on + strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.084 kb on - strand, within PFLU_RS25020 at 5601.113 kb on + strand, within PFLU_RS25020 at 5601.114 kb on - strand, within PFLU_RS25020
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C); with MOPS remove 5,598,809 + PFLU_RS25005 0.40 -0.4 5,598,964 + PFLU_RS25005 0.52 +0.1 5,598,964 + PFLU_RS25005 0.52 -1.0 5,598,964 + PFLU_RS25005 0.52 +1.3 5,598,965 - PFLU_RS25005 0.52 -3.4 5,599,131 + PFLU_RS25005 0.66 +0.4 5,599,131 + PFLU_RS25005 0.66 +0.1 5,599,131 + PFLU_RS25005 0.66 -0.6 5,599,131 + PFLU_RS25005 0.66 +0.2 5,599,132 - PFLU_RS25005 0.66 +0.7 5,599,132 - PFLU_RS25005 0.66 +0.5 5,599,132 - PFLU_RS25005 0.66 +0.2 5,599,254 + PFLU_RS25005 0.76 +0.8 5,599,254 + PFLU_RS25005 0.76 -1.1 5,599,254 + PFLU_RS25005 0.76 -0.1 5,599,254 + PFLU_RS25005 0.76 -0.6 5,599,254 + PFLU_RS25005 0.76 -0.3 5,599,255 - PFLU_RS25005 0.76 -1.0 5,599,255 - PFLU_RS25005 0.76 +2.0 5,599,255 - PFLU_RS25005 0.76 +0.5 5,599,281 + PFLU_RS25005 0.78 +0.0 5,599,281 + PFLU_RS25005 0.78 +0.6 5,599,282 - PFLU_RS25005 0.79 -0.9 5,599,282 - PFLU_RS25005 0.79 +0.6 5,599,290 - PFLU_RS25005 0.79 +0.4 5,599,446 + +0.7 5,599,502 - -0.1 5,599,572 + -1.5 5,599,572 + +0.4 5,599,572 + +0.7 5,599,572 + +1.0 5,599,572 + -0.2 5,599,572 + +1.1 5,599,572 + +0.7 5,599,572 + +0.0 5,599,573 - -1.0 5,599,573 - +1.2 5,599,573 - -1.7 5,599,573 - +0.1 5,599,573 - -2.7 5,599,581 + -0.7 5,599,581 + +0.8 5,599,582 - +0.9 5,599,582 - +0.3 5,599,582 - +1.3 5,599,588 + +0.3 5,599,641 + -0.7 5,599,641 + +0.7 5,599,642 - +0.6 5,599,670 + -2.3 5,599,670 + -0.6 5,599,670 + -0.7 5,599,670 + +0.4 5,599,676 + +0.4 5,599,676 + +0.2 5,599,676 + -0.0 5,599,676 + +0.5 5,599,677 - -1.5 5,599,677 - +1.6 5,599,677 - +1.4 5,599,677 - -0.7 5,599,677 - -1.4 5,599,677 - +0.7 5,599,718 + -0.8 5,599,718 + +0.8 5,599,718 + -0.3 5,599,718 + +0.2 5,599,718 + +0.7 5,599,718 + -0.5 5,599,719 - -1.3 5,599,719 - +0.5 5,599,733 + +1.1 5,599,733 + -0.4 5,599,734 - -0.0 5,599,734 - -0.4 5,599,734 - +0.3 5,599,734 - +1.0 5,599,761 - -1.1 5,599,883 - PFLU_RS25010 0.27 +0.3 5,600,002 + PFLU_RS25010 0.58 -0.2 5,600,002 + PFLU_RS25010 0.58 -1.4 5,600,002 + PFLU_RS25010 0.58 -0.3 5,600,002 + PFLU_RS25010 0.58 -1.4 5,600,002 + PFLU_RS25010 0.58 +1.1 5,600,002 + PFLU_RS25010 0.58 +0.2 5,600,002 + PFLU_RS25010 0.58 +0.5 5,600,003 - PFLU_RS25010 0.59 +1.0 5,600,003 - PFLU_RS25010 0.59 +1.0 5,600,023 + PFLU_RS25010 0.64 +0.1 5,600,023 + PFLU_RS25010 0.64 +0.4 5,600,023 + PFLU_RS25010 0.64 +1.3 5,600,023 + PFLU_RS25010 0.64 +1.0 5,600,023 + PFLU_RS25010 0.64 +0.6 5,600,023 + PFLU_RS25010 0.64 +1.8 5,600,023 + PFLU_RS25010 0.64 -1.3 5,600,023 + PFLU_RS25010 0.64 +0.2 5,600,024 - PFLU_RS25010 0.64 +0.6 5,600,024 - PFLU_RS25010 0.64 +1.3 5,600,024 - PFLU_RS25010 0.64 +0.7 5,600,024 - PFLU_RS25010 0.64 +4.4 5,600,109 + PFLU_RS25010 0.86 -0.8 5,600,133 + -1.9 5,600,134 - -0.5 5,600,184 + -0.3 5,600,184 + -0.2 5,600,184 + +0.3 5,600,184 + +1.0 5,600,184 + -0.7 5,600,184 + -0.4 5,600,184 + -1.0 5,600,185 - +0.9 5,600,185 - -1.2 5,600,190 + -1.6 5,600,270 + +0.7 5,600,383 + PFLU_RS25015 0.40 +0.0 5,600,383 + PFLU_RS25015 0.40 +0.2 5,600,383 + PFLU_RS25015 0.40 +0.3 5,600,383 + PFLU_RS25015 0.40 -0.3 5,600,384 - PFLU_RS25015 0.40 +0.7 5,600,384 - PFLU_RS25015 0.40 -0.1 5,600,495 - PFLU_RS25015 0.79 -2.2 5,600,495 - PFLU_RS25015 0.79 +0.5 5,600,495 - PFLU_RS25015 0.79 -0.7 5,600,517 + PFLU_RS25015 0.87 -0.2 5,600,517 + PFLU_RS25015 0.87 +0.8 5,600,518 - PFLU_RS25015 0.87 -0.7 5,600,546 + +1.2 5,600,547 - -0.6 5,600,559 - +0.2 5,600,559 - +0.6 5,600,692 - PFLU_RS25020 0.12 -1.5 5,600,692 - PFLU_RS25020 0.12 -1.5 5,600,746 - PFLU_RS25020 0.18 +0.6 5,600,780 + PFLU_RS25020 0.22 -0.2 5,600,780 + PFLU_RS25020 0.22 -0.4 5,600,781 - PFLU_RS25020 0.22 +0.6 5,600,781 - PFLU_RS25020 0.22 +1.2 5,600,972 + PFLU_RS25020 0.43 +0.3 5,601,022 - PFLU_RS25020 0.49 -0.6 5,601,079 + PFLU_RS25020 0.55 +0.1 5,601,083 + PFLU_RS25020 0.56 +0.1 5,601,083 + PFLU_RS25020 0.56 -2.0 5,601,083 + PFLU_RS25020 0.56 +0.7 5,601,083 + PFLU_RS25020 0.56 +0.9 5,601,083 + PFLU_RS25020 0.56 -1.3 5,601,084 - PFLU_RS25020 0.56 -0.3 5,601,084 - PFLU_RS25020 0.56 -0.4 5,601,084 - PFLU_RS25020 0.56 +0.0 5,601,084 - PFLU_RS25020 0.56 +0.8 5,601,084 - PFLU_RS25020 0.56 +0.1 5,601,084 - PFLU_RS25020 0.56 -0.7 5,601,084 - PFLU_RS25020 0.56 +0.1 5,601,084 - PFLU_RS25020 0.56 -0.3 5,601,084 - PFLU_RS25020 0.56 +0.8 5,601,113 + PFLU_RS25020 0.59 -1.4 5,601,114 - PFLU_RS25020 0.59 +0.7
Or see this region's nucleotide sequence