Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05570

Experiment: Trisodium citrate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS05560 and PFLU_RS05565 overlap by 4 nucleotidesPFLU_RS05565 and PFLU_RS05570 overlap by 4 nucleotidesPFLU_RS05570 and PFLU_RS05575 are separated by 68 nucleotidesPFLU_RS05575 and PFLU_RS05580 are separated by 56 nucleotides PFLU_RS05560: PFLU_RS05560 - hypothetical protein, at 1,255,949 to 1,256,869 _RS05560 PFLU_RS05565: PFLU_RS05565 - transporter, at 1,256,866 to 1,257,246 _RS05565 PFLU_RS05570: PFLU_RS05570 - EamA family transporter, at 1,257,243 to 1,257,647 _RS05570 PFLU_RS05575: PFLU_RS05575 - fatty acid desaturase, at 1,257,716 to 1,258,588 _RS05575 PFLU_RS05580: PFLU_RS05580 - MipA/OmpV family protein, at 1,258,645 to 1,259,415 _RS05580 Position (kb) 1257 1258Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1256.356 kb on + strand, within PFLU_RS05560at 1257.121 kb on + strand, within PFLU_RS05565at 1257.201 kb on + strand, within PFLU_RS05565at 1257.201 kb on + strand, within PFLU_RS05565at 1257.201 kb on + strand, within PFLU_RS05565at 1257.201 kb on + strand, within PFLU_RS05565at 1257.202 kb on - strand, within PFLU_RS05565at 1257.248 kb on + strandat 1257.249 kb on - strandat 1257.249 kb on - strandat 1257.345 kb on - strand, within PFLU_RS05570at 1257.345 kb on - strand, within PFLU_RS05570at 1257.444 kb on + strand, within PFLU_RS05570at 1257.444 kb on + strand, within PFLU_RS05570at 1257.445 kb on - strand, within PFLU_RS05570at 1257.446 kb on + strand, within PFLU_RS05570at 1257.447 kb on - strand, within PFLU_RS05570at 1257.447 kb on - strand, within PFLU_RS05570at 1257.569 kb on + strand, within PFLU_RS05570at 1257.569 kb on + strand, within PFLU_RS05570at 1257.569 kb on + strand, within PFLU_RS05570at 1257.569 kb on + strand, within PFLU_RS05570at 1257.570 kb on - strand, within PFLU_RS05570at 1257.570 kb on - strand, within PFLU_RS05570at 1257.570 kb on - strand, within PFLU_RS05570at 1257.703 kb on + strandat 1257.703 kb on + strandat 1257.703 kb on + strandat 1257.704 kb on - strandat 1257.704 kb on - strandat 1257.704 kb on - strandat 1257.704 kb on - strandat 1257.752 kb on + strandat 1257.900 kb on + strand, within PFLU_RS05575at 1257.900 kb on + strand, within PFLU_RS05575at 1257.900 kb on + strand, within PFLU_RS05575at 1257.900 kb on + strand, within PFLU_RS05575at 1257.900 kb on + strand, within PFLU_RS05575at 1257.901 kb on - strand, within PFLU_RS05575at 1257.901 kb on - strand, within PFLU_RS05575at 1257.901 kb on - strand, within PFLU_RS05575at 1257.901 kb on - strand, within PFLU_RS05575at 1257.901 kb on - strand, within PFLU_RS05575at 1257.912 kb on + strand, within PFLU_RS05575at 1257.920 kb on + strand, within PFLU_RS05575at 1257.920 kb on + strand, within PFLU_RS05575at 1257.920 kb on + strand, within PFLU_RS05575at 1257.921 kb on - strand, within PFLU_RS05575at 1257.921 kb on - strand, within PFLU_RS05575at 1257.921 kb on - strand, within PFLU_RS05575at 1257.921 kb on - strand, within PFLU_RS05575at 1257.966 kb on + strand, within PFLU_RS05575at 1257.967 kb on - strand, within PFLU_RS05575at 1257.967 kb on - strand, within PFLU_RS05575at 1257.967 kb on - strand, within PFLU_RS05575at 1257.967 kb on - strand, within PFLU_RS05575at 1257.967 kb on - strand, within PFLU_RS05575at 1257.967 kb on - strand, within PFLU_RS05575at 1257.969 kb on + strand, within PFLU_RS05575at 1257.970 kb on - strand, within PFLU_RS05575at 1257.970 kb on - strand, within PFLU_RS05575at 1258.002 kb on + strand, within PFLU_RS05575at 1258.059 kb on + strand, within PFLU_RS05575at 1258.134 kb on + strand, within PFLU_RS05575at 1258.134 kb on + strand, within PFLU_RS05575at 1258.134 kb on + strand, within PFLU_RS05575at 1258.134 kb on + strand, within PFLU_RS05575at 1258.135 kb on - strand, within PFLU_RS05575at 1258.135 kb on - strand, within PFLU_RS05575at 1258.174 kb on + strand, within PFLU_RS05575at 1258.174 kb on + strand, within PFLU_RS05575at 1258.175 kb on - strand, within PFLU_RS05575at 1258.176 kb on + strand, within PFLU_RS05575at 1258.176 kb on + strand, within PFLU_RS05575at 1258.176 kb on + strand, within PFLU_RS05575at 1258.177 kb on - strand, within PFLU_RS05575at 1258.177 kb on - strand, within PFLU_RS05575at 1258.177 kb on - strand, within PFLU_RS05575at 1258.177 kb on - strand, within PFLU_RS05575at 1258.218 kb on + strand, within PFLU_RS05575at 1258.218 kb on + strand, within PFLU_RS05575at 1258.218 kb on + strand, within PFLU_RS05575at 1258.219 kb on - strand, within PFLU_RS05575at 1258.219 kb on - strand, within PFLU_RS05575at 1258.377 kb on + strand, within PFLU_RS05575at 1258.378 kb on - strand, within PFLU_RS05575at 1258.438 kb on - strand, within PFLU_RS05575at 1258.572 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C); with MOPS
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1,256,356 + PFLU_RS05560 0.44 +0.2
1,257,121 + PFLU_RS05565 0.67 -1.5
1,257,201 + PFLU_RS05565 0.88 -0.5
1,257,201 + PFLU_RS05565 0.88 -0.2
1,257,201 + PFLU_RS05565 0.88 -0.5
1,257,201 + PFLU_RS05565 0.88 +0.2
1,257,202 - PFLU_RS05565 0.88 -0.8
1,257,248 + -1.0
1,257,249 - +0.2
1,257,249 - -1.0
1,257,345 - PFLU_RS05570 0.25 +0.8
1,257,345 - PFLU_RS05570 0.25 +0.8
1,257,444 + PFLU_RS05570 0.50 +0.8
1,257,444 + PFLU_RS05570 0.50 +1.8
1,257,445 - PFLU_RS05570 0.50 -0.5
1,257,446 + PFLU_RS05570 0.50 +0.8
1,257,447 - PFLU_RS05570 0.50 +0.8
1,257,447 - PFLU_RS05570 0.50 -0.2
1,257,569 + PFLU_RS05570 0.80 -1.2
1,257,569 + PFLU_RS05570 0.80 +0.8
1,257,569 + PFLU_RS05570 0.80 -0.2
1,257,569 + PFLU_RS05570 0.80 -1.0
1,257,570 - PFLU_RS05570 0.81 +0.2
1,257,570 - PFLU_RS05570 0.81 -0.8
1,257,570 - PFLU_RS05570 0.81 -0.5
1,257,703 + +0.4
1,257,703 + +1.2
1,257,703 + +0.4
1,257,704 - +0.3
1,257,704 - +0.2
1,257,704 - +0.1
1,257,704 - -0.6
1,257,752 + +0.6
1,257,900 + PFLU_RS05575 0.21 +0.5
1,257,900 + PFLU_RS05575 0.21 -1.4
1,257,900 + PFLU_RS05575 0.21 -0.3
1,257,900 + PFLU_RS05575 0.21 -0.4
1,257,900 + PFLU_RS05575 0.21 -1.5
1,257,901 - PFLU_RS05575 0.21 +0.1
1,257,901 - PFLU_RS05575 0.21 +0.9
1,257,901 - PFLU_RS05575 0.21 -2.3
1,257,901 - PFLU_RS05575 0.21 -0.2
1,257,901 - PFLU_RS05575 0.21 +1.0
1,257,912 + PFLU_RS05575 0.22 -0.9
1,257,920 + PFLU_RS05575 0.23 +0.6
1,257,920 + PFLU_RS05575 0.23 -0.8
1,257,920 + PFLU_RS05575 0.23 +1.0
1,257,921 - PFLU_RS05575 0.23 +0.6
1,257,921 - PFLU_RS05575 0.23 -2.4
1,257,921 - PFLU_RS05575 0.23 +0.8
1,257,921 - PFLU_RS05575 0.23 -0.5
1,257,966 + PFLU_RS05575 0.29 +0.2
1,257,967 - PFLU_RS05575 0.29 +0.4
1,257,967 - PFLU_RS05575 0.29 -0.4
1,257,967 - PFLU_RS05575 0.29 -0.2
1,257,967 - PFLU_RS05575 0.29 -0.1
1,257,967 - PFLU_RS05575 0.29 +0.2
1,257,967 - PFLU_RS05575 0.29 +1.0
1,257,969 + PFLU_RS05575 0.29 +0.9
1,257,970 - PFLU_RS05575 0.29 +0.3
1,257,970 - PFLU_RS05575 0.29 -0.0
1,258,002 + PFLU_RS05575 0.33 -0.7
1,258,059 + PFLU_RS05575 0.39 -0.7
1,258,134 + PFLU_RS05575 0.48 -0.2
1,258,134 + PFLU_RS05575 0.48 -0.3
1,258,134 + PFLU_RS05575 0.48 +2.1
1,258,134 + PFLU_RS05575 0.48 -1.9
1,258,135 - PFLU_RS05575 0.48 +0.4
1,258,135 - PFLU_RS05575 0.48 +0.7
1,258,174 + PFLU_RS05575 0.52 +1.3
1,258,174 + PFLU_RS05575 0.52 +0.9
1,258,175 - PFLU_RS05575 0.53 +0.2
1,258,176 + PFLU_RS05575 0.53 +1.2
1,258,176 + PFLU_RS05575 0.53 -0.8
1,258,176 + PFLU_RS05575 0.53 +0.6
1,258,177 - PFLU_RS05575 0.53 -1.3
1,258,177 - PFLU_RS05575 0.53 +0.7
1,258,177 - PFLU_RS05575 0.53 -0.3
1,258,177 - PFLU_RS05575 0.53 -0.3
1,258,218 + PFLU_RS05575 0.58 -0.2
1,258,218 + PFLU_RS05575 0.58 +1.0
1,258,218 + PFLU_RS05575 0.58 +0.2
1,258,219 - PFLU_RS05575 0.58 -0.5
1,258,219 - PFLU_RS05575 0.58 +0.5
1,258,377 + PFLU_RS05575 0.76 +3.1
1,258,378 - PFLU_RS05575 0.76 +0.5
1,258,438 - PFLU_RS05575 0.83 +0.5
1,258,572 + +0.5

Or see this region's nucleotide sequence