Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS03250

Experiment: Trisodium citrate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03240 and PFLU_RS03245 are separated by 66 nucleotidesPFLU_RS03245 and PFLU_RS03250 are separated by 147 nucleotidesPFLU_RS03250 and PFLU_RS03255 are separated by 85 nucleotides PFLU_RS03240: PFLU_RS03240 - copper-translocating P-type ATPase, at 748,572 to 750,773 _RS03240 PFLU_RS03245: PFLU_RS03245 - hypothetical protein, at 750,840 to 751,220 _RS03245 PFLU_RS03250: PFLU_RS03250 - heavy-metal-associated domain-containing protein, at 751,368 to 751,565 _RS03250 PFLU_RS03255: PFLU_RS03255 - multidrug effflux MFS transporter, at 751,651 to 752,844 _RS03255 Position (kb) 751 752Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 750.574 kb on + strandat 750.574 kb on + strandat 750.574 kb on + strandat 750.802 kb on + strandat 750.803 kb on - strandat 750.841 kb on + strandat 750.841 kb on + strandat 750.842 kb on - strandat 750.842 kb on - strandat 750.842 kb on - strandat 750.844 kb on + strandat 750.845 kb on - strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 751.005 kb on + strand, within PFLU_RS03245at 751.005 kb on + strand, within PFLU_RS03245at 751.005 kb on + strand, within PFLU_RS03245at 751.006 kb on - strand, within PFLU_RS03245at 751.006 kb on - strand, within PFLU_RS03245at 751.006 kb on - strand, within PFLU_RS03245at 751.006 kb on - strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.141 kb on + strand, within PFLU_RS03245at 751.141 kb on + strand, within PFLU_RS03245at 751.141 kb on + strand, within PFLU_RS03245at 751.141 kb on + strand, within PFLU_RS03245at 751.141 kb on + strand, within PFLU_RS03245at 751.142 kb on - strand, within PFLU_RS03245at 751.142 kb on - strand, within PFLU_RS03245at 751.142 kb on - strand, within PFLU_RS03245at 751.282 kb on - strandat 751.296 kb on + strandat 751.296 kb on + strandat 751.296 kb on + strandat 751.296 kb on + strandat 751.297 kb on - strandat 751.297 kb on - strandat 751.315 kb on + strandat 751.315 kb on + strandat 751.316 kb on - strandat 751.375 kb on + strandat 751.375 kb on + strandat 751.375 kb on + strandat 751.376 kb on - strandat 751.376 kb on - strandat 751.376 kb on - strandat 751.376 kb on - strandat 751.376 kb on - strandat 751.545 kb on + strand, within PFLU_RS03250at 751.546 kb on - strandat 751.546 kb on - strandat 751.559 kb on - strandat 751.559 kb on - strandat 751.559 kb on - strandat 751.559 kb on - strandat 751.577 kb on - strandat 751.580 kb on + strandat 751.589 kb on - strandat 751.589 kb on - strandat 751.621 kb on + strandat 751.664 kb on + strandat 751.665 kb on - strandat 751.665 kb on - strandat 751.665 kb on - strandat 751.792 kb on + strand, within PFLU_RS03255at 751.792 kb on + strand, within PFLU_RS03255at 751.792 kb on + strand, within PFLU_RS03255at 751.793 kb on - strand, within PFLU_RS03255at 751.793 kb on - strand, within PFLU_RS03255at 751.793 kb on - strand, within PFLU_RS03255at 751.825 kb on + strand, within PFLU_RS03255at 751.825 kb on + strand, within PFLU_RS03255at 751.825 kb on + strand, within PFLU_RS03255at 751.825 kb on + strand, within PFLU_RS03255at 751.825 kb on + strand, within PFLU_RS03255at 751.825 kb on + strand, within PFLU_RS03255at 751.826 kb on - strand, within PFLU_RS03255at 751.826 kb on - strand, within PFLU_RS03255at 751.826 kb on - strand, within PFLU_RS03255at 751.826 kb on - strand, within PFLU_RS03255at 751.826 kb on - strand, within PFLU_RS03255at 751.826 kb on - strand, within PFLU_RS03255at 751.826 kb on - strand, within PFLU_RS03255at 751.887 kb on + strand, within PFLU_RS03255at 751.887 kb on + strand, within PFLU_RS03255at 751.887 kb on + strand, within PFLU_RS03255at 751.887 kb on + strand, within PFLU_RS03255at 751.887 kb on + strand, within PFLU_RS03255at 751.888 kb on - strand, within PFLU_RS03255at 751.888 kb on - strand, within PFLU_RS03255at 752.038 kb on + strand, within PFLU_RS03255at 752.038 kb on + strand, within PFLU_RS03255at 752.039 kb on - strand, within PFLU_RS03255at 752.039 kb on - strand, within PFLU_RS03255at 752.147 kb on + strand, within PFLU_RS03255at 752.245 kb on + strand, within PFLU_RS03255at 752.272 kb on + strand, within PFLU_RS03255at 752.281 kb on + strand, within PFLU_RS03255at 752.281 kb on + strand, within PFLU_RS03255at 752.282 kb on - strand, within PFLU_RS03255at 752.298 kb on + strand, within PFLU_RS03255at 752.299 kb on - strand, within PFLU_RS03255at 752.299 kb on - strand, within PFLU_RS03255at 752.299 kb on - strand, within PFLU_RS03255at 752.323 kb on + strand, within PFLU_RS03255at 752.323 kb on + strand, within PFLU_RS03255at 752.323 kb on + strand, within PFLU_RS03255at 752.323 kb on + strand, within PFLU_RS03255at 752.323 kb on + strand, within PFLU_RS03255at 752.324 kb on - strand, within PFLU_RS03255at 752.324 kb on - strand, within PFLU_RS03255at 752.381 kb on - strand, within PFLU_RS03255at 752.418 kb on - strand, within PFLU_RS03255at 752.418 kb on - strand, within PFLU_RS03255at 752.486 kb on + strand, within PFLU_RS03255at 752.494 kb on + strand, within PFLU_RS03255at 752.494 kb on + strand, within PFLU_RS03255at 752.494 kb on + strand, within PFLU_RS03255at 752.494 kb on + strand, within PFLU_RS03255

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C); with MOPS
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750,574 + -1.3
750,574 + +0.4
750,574 + +0.5
750,802 + +0.8
750,803 - -2.3
750,841 + +0.3
750,841 + -0.1
750,842 - +0.5
750,842 - +0.7
750,842 - -1.6
750,844 + -1.9
750,845 - -0.1
750,868 + +0.0
750,868 + +1.5
750,868 + +0.9
750,868 + +4.8
750,868 + -0.3
750,868 + -0.5
750,868 + +0.7
750,869 - +0.9
750,869 - +2.0
750,869 - +1.0
750,869 - -0.3
750,869 - +0.0
750,869 - -0.2
750,869 - +0.5
750,869 - +0.7
750,869 - +0.4
750,869 - +0.7
750,869 - -0.3
750,869 - +0.6
750,869 - -0.1
750,869 - +0.3
750,869 - -0.3
750,869 - +0.5
750,869 - +0.8
751,005 + PFLU_RS03245 0.43 +0.4
751,005 + PFLU_RS03245 0.43 -1.4
751,005 + PFLU_RS03245 0.43 +0.4
751,006 - PFLU_RS03245 0.44 +0.4
751,006 - PFLU_RS03245 0.44 -2.1
751,006 - PFLU_RS03245 0.44 +2.9
751,006 - PFLU_RS03245 0.44 -0.6
751,078 + PFLU_RS03245 0.62 +1.0
751,078 + PFLU_RS03245 0.62 +2.0
751,078 + PFLU_RS03245 0.62 +0.9
751,078 + PFLU_RS03245 0.62 -0.3
751,078 + PFLU_RS03245 0.62 +1.1
751,078 + PFLU_RS03245 0.62 +0.3
751,078 + PFLU_RS03245 0.62 +0.5
751,078 + PFLU_RS03245 0.62 -0.3
751,078 + PFLU_RS03245 0.62 +1.9
751,078 + PFLU_RS03245 0.62 +0.7
751,078 + PFLU_RS03245 0.62 +1.0
751,078 + PFLU_RS03245 0.62 +1.2
751,078 + PFLU_RS03245 0.62 -0.9
751,079 - PFLU_RS03245 0.63 +1.1
751,079 - PFLU_RS03245 0.63 +0.7
751,079 - PFLU_RS03245 0.63 +0.5
751,079 - PFLU_RS03245 0.63 +1.6
751,079 - PFLU_RS03245 0.63 +0.5
751,079 - PFLU_RS03245 0.63 +0.5
751,079 - PFLU_RS03245 0.63 +0.7
751,079 - PFLU_RS03245 0.63 -0.2
751,079 - PFLU_RS03245 0.63 +1.1
751,079 - PFLU_RS03245 0.63 +0.4
751,079 - PFLU_RS03245 0.63 +1.1
751,079 - PFLU_RS03245 0.63 +0.6
751,079 - PFLU_RS03245 0.63 -0.8
751,141 + PFLU_RS03245 0.79 +1.2
751,141 + PFLU_RS03245 0.79 +0.2
751,141 + PFLU_RS03245 0.79 +0.8
751,141 + PFLU_RS03245 0.79 +0.2
751,141 + PFLU_RS03245 0.79 +1.7
751,142 - PFLU_RS03245 0.79 +1.4
751,142 - PFLU_RS03245 0.79 +1.4
751,142 - PFLU_RS03245 0.79 +2.4
751,282 - +0.6
751,296 + -0.4
751,296 + +0.8
751,296 + +0.6
751,296 + +0.8
751,297 - +1.6
751,297 - +1.2
751,315 + +1.0
751,315 + +0.4
751,316 - +0.2
751,375 + -0.7
751,375 + -1.5
751,375 + -0.4
751,376 - +0.5
751,376 - +1.8
751,376 - -0.6
751,376 - +0.4
751,376 - +0.2
751,545 + PFLU_RS03250 0.89 -1.2
751,546 - -0.8
751,546 - -1.3
751,559 - -2.4
751,559 - +0.6
751,559 - +0.0
751,559 - -0.1
751,577 - -0.3
751,580 + +0.4
751,589 - -0.4
751,589 - +0.4
751,621 + -1.6
751,664 + +0.5
751,665 - -1.2
751,665 - -0.6
751,665 - +0.4
751,792 + PFLU_RS03255 0.12 +0.4
751,792 + PFLU_RS03255 0.12 -2.1
751,792 + PFLU_RS03255 0.12 -0.1
751,793 - PFLU_RS03255 0.12 +0.2
751,793 - PFLU_RS03255 0.12 +0.8
751,793 - PFLU_RS03255 0.12 +0.5
751,825 + PFLU_RS03255 0.15 -0.6
751,825 + PFLU_RS03255 0.15 +0.2
751,825 + PFLU_RS03255 0.15 +0.3
751,825 + PFLU_RS03255 0.15 +0.3
751,825 + PFLU_RS03255 0.15 +1.3
751,825 + PFLU_RS03255 0.15 -0.3
751,826 - PFLU_RS03255 0.15 +1.1
751,826 - PFLU_RS03255 0.15 +1.5
751,826 - PFLU_RS03255 0.15 -0.5
751,826 - PFLU_RS03255 0.15 -1.8
751,826 - PFLU_RS03255 0.15 +1.6
751,826 - PFLU_RS03255 0.15 +0.9
751,826 - PFLU_RS03255 0.15 +0.4
751,887 + PFLU_RS03255 0.20 -1.9
751,887 + PFLU_RS03255 0.20 -0.8
751,887 + PFLU_RS03255 0.20 +0.3
751,887 + PFLU_RS03255 0.20 -0.6
751,887 + PFLU_RS03255 0.20 +0.2
751,888 - PFLU_RS03255 0.20 -0.8
751,888 - PFLU_RS03255 0.20 +0.4
752,038 + PFLU_RS03255 0.32 +0.7
752,038 + PFLU_RS03255 0.32 +1.1
752,039 - PFLU_RS03255 0.32 +0.9
752,039 - PFLU_RS03255 0.32 -0.5
752,147 + PFLU_RS03255 0.42 -0.6
752,245 + PFLU_RS03255 0.50 +0.5
752,272 + PFLU_RS03255 0.52 +0.9
752,281 + PFLU_RS03255 0.53 -0.8
752,281 + PFLU_RS03255 0.53 +0.1
752,282 - PFLU_RS03255 0.53 +0.5
752,298 + PFLU_RS03255 0.54 -0.2
752,299 - PFLU_RS03255 0.54 -0.1
752,299 - PFLU_RS03255 0.54 +1.1
752,299 - PFLU_RS03255 0.54 -1.2
752,323 + PFLU_RS03255 0.56 -0.8
752,323 + PFLU_RS03255 0.56 +0.4
752,323 + PFLU_RS03255 0.56 -0.7
752,323 + PFLU_RS03255 0.56 -1.3
752,323 + PFLU_RS03255 0.56 -0.3
752,324 - PFLU_RS03255 0.56 +0.4
752,324 - PFLU_RS03255 0.56 +1.5
752,381 - PFLU_RS03255 0.61 +0.1
752,418 - PFLU_RS03255 0.64 -0.1
752,418 - PFLU_RS03255 0.64 +0.4
752,486 + PFLU_RS03255 0.70 +0.1
752,494 + PFLU_RS03255 0.71 +0.8
752,494 + PFLU_RS03255 0.71 +1.0
752,494 + PFLU_RS03255 0.71 +0.4
752,494 + PFLU_RS03255 0.71 +0.2

Or see this region's nucleotide sequence