Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS02975

Experiment: Trisodium citrate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02970 and PFLU_RS02975 are separated by 38 nucleotidesPFLU_RS02975 and PFLU_RS02980 overlap by 8 nucleotidesPFLU_RS02980 and PFLU_RS02985 overlap by 1 nucleotides PFLU_RS02970: PFLU_RS02970 - bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase, at 683,367 to 684,572 _RS02970 PFLU_RS02975: PFLU_RS02975 - precorrin-3B synthase, at 684,611 to 685,957 _RS02975 PFLU_RS02980: PFLU_RS02980 - precorrin-8X methylmutase, at 685,950 to 686,576 _RS02980 PFLU_RS02985: PFLU_RS02985 - precorrin-2 C(20)-methyltransferase, at 686,576 to 687,307 _RS02985 Position (kb) 684 685 686Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 683.897 kb on + strand, within PFLU_RS02970at 683.942 kb on + strand, within PFLU_RS02970at 684.075 kb on - strand, within PFLU_RS02970at 684.331 kb on + strand, within PFLU_RS02970at 684.331 kb on + strand, within PFLU_RS02970at 684.437 kb on + strand, within PFLU_RS02970at 684.437 kb on + strand, within PFLU_RS02970at 684.438 kb on - strand, within PFLU_RS02970at 684.438 kb on - strand, within PFLU_RS02970at 684.438 kb on - strand, within PFLU_RS02970at 684.474 kb on + strandat 684.474 kb on + strandat 684.474 kb on + strandat 684.474 kb on + strandat 684.475 kb on - strandat 684.475 kb on - strandat 684.476 kb on + strandat 684.476 kb on + strandat 684.476 kb on + strandat 684.477 kb on - strandat 684.550 kb on - strandat 684.550 kb on - strandat 684.572 kb on + strandat 684.572 kb on + strandat 684.572 kb on + strandat 684.572 kb on + strandat 684.572 kb on + strandat 684.573 kb on - strandat 684.573 kb on - strandat 684.633 kb on + strandat 684.634 kb on - strandat 684.634 kb on - strandat 684.634 kb on - strandat 684.634 kb on - strandat 684.634 kb on - strandat 684.634 kb on - strandat 684.636 kb on + strandat 684.647 kb on + strandat 684.691 kb on + strandat 684.691 kb on + strandat 684.691 kb on + strandat 684.691 kb on + strandat 684.692 kb on - strandat 684.692 kb on - strandat 684.827 kb on + strand, within PFLU_RS02975at 684.827 kb on + strand, within PFLU_RS02975at 684.828 kb on - strand, within PFLU_RS02975at 684.960 kb on + strand, within PFLU_RS02975at 684.960 kb on + strand, within PFLU_RS02975at 684.960 kb on + strand, within PFLU_RS02975at 684.960 kb on + strand, within PFLU_RS02975at 684.960 kb on + strand, within PFLU_RS02975at 684.960 kb on + strand, within PFLU_RS02975at 684.960 kb on + strand, within PFLU_RS02975at 684.960 kb on + strand, within PFLU_RS02975at 684.961 kb on - strand, within PFLU_RS02975at 684.961 kb on - strand, within PFLU_RS02975at 684.961 kb on - strand, within PFLU_RS02975at 684.961 kb on - strand, within PFLU_RS02975at 684.961 kb on - strand, within PFLU_RS02975at 684.961 kb on - strand, within PFLU_RS02975at 684.961 kb on - strand, within PFLU_RS02975at 685.366 kb on - strand, within PFLU_RS02975at 685.366 kb on - strand, within PFLU_RS02975at 685.425 kb on - strand, within PFLU_RS02975at 685.451 kb on + strand, within PFLU_RS02975at 685.451 kb on + strand, within PFLU_RS02975at 685.452 kb on - strand, within PFLU_RS02975at 685.452 kb on - strand, within PFLU_RS02975at 685.835 kb on + strandat 685.844 kb on + strandat 685.845 kb on - strandat 685.900 kb on + strandat 685.900 kb on + strandat 685.901 kb on - strandat 685.901 kb on - strandat 685.959 kb on + strandat 685.959 kb on + strandat 685.959 kb on + strandat 685.960 kb on - strandat 685.960 kb on - strandat 685.960 kb on - strandat 685.960 kb on - strandat 685.960 kb on - strandat 685.960 kb on - strandat 686.373 kb on + strand, within PFLU_RS02980at 686.373 kb on + strand, within PFLU_RS02980at 686.681 kb on + strand, within PFLU_RS02985at 686.682 kb on - strand, within PFLU_RS02985at 686.768 kb on + strand, within PFLU_RS02985at 686.769 kb on - strand, within PFLU_RS02985at 686.788 kb on - strand, within PFLU_RS02985at 686.788 kb on - strand, within PFLU_RS02985at 686.807 kb on + strand, within PFLU_RS02985at 686.807 kb on + strand, within PFLU_RS02985at 686.807 kb on + strand, within PFLU_RS02985at 686.807 kb on + strand, within PFLU_RS02985at 686.808 kb on - strand, within PFLU_RS02985at 686.831 kb on + strand, within PFLU_RS02985at 686.831 kb on + strand, within PFLU_RS02985at 686.915 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.924 kb on + strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.925 kb on - strand, within PFLU_RS02985at 686.930 kb on + strand, within PFLU_RS02985at 686.930 kb on + strand, within PFLU_RS02985at 686.930 kb on + strand, within PFLU_RS02985at 686.930 kb on + strand, within PFLU_RS02985at 686.930 kb on + strand, within PFLU_RS02985at 686.930 kb on + strand, within PFLU_RS02985at 686.930 kb on + strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985at 686.931 kb on - strand, within PFLU_RS02985

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C); with MOPS
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683,897 + PFLU_RS02970 0.44 -0.5
683,942 + PFLU_RS02970 0.48 -1.2
684,075 - PFLU_RS02970 0.59 -3.4
684,331 + PFLU_RS02970 0.80 -0.5
684,331 + PFLU_RS02970 0.80 -1.8
684,437 + PFLU_RS02970 0.89 -0.9
684,437 + PFLU_RS02970 0.89 +0.3
684,438 - PFLU_RS02970 0.89 -0.7
684,438 - PFLU_RS02970 0.89 -2.6
684,438 - PFLU_RS02970 0.89 -1.7
684,474 + +0.4
684,474 + -1.7
684,474 + -1.1
684,474 + -0.5
684,475 - +0.8
684,475 - -0.8
684,476 + -1.9
684,476 + -0.8
684,476 + -2.1
684,477 - -0.5
684,550 - -1.6
684,550 - -0.1
684,572 + -0.3
684,572 + -0.3
684,572 + -0.2
684,572 + +0.4
684,572 + +1.2
684,573 - -0.7
684,573 - +0.0
684,633 + +0.8
684,634 - -1.8
684,634 - -0.6
684,634 - -0.7
684,634 - +0.4
684,634 - +0.8
684,634 - -0.7
684,636 + -0.1
684,647 + +0.5
684,691 + +0.7
684,691 + -0.2
684,691 + -1.8
684,691 + -1.9
684,692 - -1.9
684,692 - -1.0
684,827 + PFLU_RS02975 0.16 -0.2
684,827 + PFLU_RS02975 0.16 -1.2
684,828 - PFLU_RS02975 0.16 -3.0
684,960 + PFLU_RS02975 0.26 -0.1
684,960 + PFLU_RS02975 0.26 -2.0
684,960 + PFLU_RS02975 0.26 +0.1
684,960 + PFLU_RS02975 0.26 -2.2
684,960 + PFLU_RS02975 0.26 -2.5
684,960 + PFLU_RS02975 0.26 -0.3
684,960 + PFLU_RS02975 0.26 -1.0
684,960 + PFLU_RS02975 0.26 -2.1
684,961 - PFLU_RS02975 0.26 -1.3
684,961 - PFLU_RS02975 0.26 -2.1
684,961 - PFLU_RS02975 0.26 -0.6
684,961 - PFLU_RS02975 0.26 -0.6
684,961 - PFLU_RS02975 0.26 -2.2
684,961 - PFLU_RS02975 0.26 -0.1
684,961 - PFLU_RS02975 0.26 +0.6
685,366 - PFLU_RS02975 0.56 +0.1
685,366 - PFLU_RS02975 0.56 -0.7
685,425 - PFLU_RS02975 0.60 -0.9
685,451 + PFLU_RS02975 0.62 -2.2
685,451 + PFLU_RS02975 0.62 -3.6
685,452 - PFLU_RS02975 0.62 -2.7
685,452 - PFLU_RS02975 0.62 -0.3
685,835 + +0.6
685,844 + -2.1
685,845 - -2.4
685,900 + -3.0
685,900 + -1.7
685,901 - +0.4
685,901 - -2.0
685,959 + +0.4
685,959 + -2.8
685,959 + -0.0
685,960 - -1.0
685,960 - -1.0
685,960 - -1.3
685,960 - -0.1
685,960 - -2.5
685,960 - -1.0
686,373 + PFLU_RS02980 0.67 -0.4
686,373 + PFLU_RS02980 0.67 -0.5
686,681 + PFLU_RS02985 0.14 -2.1
686,682 - PFLU_RS02985 0.14 +1.2
686,768 + PFLU_RS02985 0.26 -2.4
686,769 - PFLU_RS02985 0.26 -1.0
686,788 - PFLU_RS02985 0.29 -1.3
686,788 - PFLU_RS02985 0.29 -0.9
686,807 + PFLU_RS02985 0.32 -0.3
686,807 + PFLU_RS02985 0.32 -2.6
686,807 + PFLU_RS02985 0.32 +0.6
686,807 + PFLU_RS02985 0.32 -0.2
686,808 - PFLU_RS02985 0.32 -1.3
686,831 + PFLU_RS02985 0.35 -1.4
686,831 + PFLU_RS02985 0.35 -1.6
686,915 + PFLU_RS02985 0.46 -2.5
686,924 + PFLU_RS02985 0.48 -0.2
686,924 + PFLU_RS02985 0.48 -1.8
686,924 + PFLU_RS02985 0.48 -2.4
686,924 + PFLU_RS02985 0.48 -0.6
686,924 + PFLU_RS02985 0.48 -0.4
686,924 + PFLU_RS02985 0.48 -0.6
686,924 + PFLU_RS02985 0.48 +0.8
686,924 + PFLU_RS02985 0.48 -1.2
686,924 + PFLU_RS02985 0.48 -1.2
686,924 + PFLU_RS02985 0.48 -1.4
686,924 + PFLU_RS02985 0.48 -1.9
686,925 - PFLU_RS02985 0.48 -0.1
686,925 - PFLU_RS02985 0.48 -1.7
686,925 - PFLU_RS02985 0.48 -0.9
686,925 - PFLU_RS02985 0.48 -2.8
686,925 - PFLU_RS02985 0.48 -1.3
686,925 - PFLU_RS02985 0.48 -1.6
686,925 - PFLU_RS02985 0.48 -0.4
686,925 - PFLU_RS02985 0.48 -3.0
686,925 - PFLU_RS02985 0.48 -1.7
686,930 + PFLU_RS02985 0.48 -2.0
686,930 + PFLU_RS02985 0.48 -0.7
686,930 + PFLU_RS02985 0.48 -1.5
686,930 + PFLU_RS02985 0.48 -1.6
686,930 + PFLU_RS02985 0.48 -1.5
686,930 + PFLU_RS02985 0.48 -1.5
686,930 + PFLU_RS02985 0.48 -2.2
686,931 - PFLU_RS02985 0.48 -3.9
686,931 - PFLU_RS02985 0.48 -1.6
686,931 - PFLU_RS02985 0.48 +0.0
686,931 - PFLU_RS02985 0.48 -1.4
686,931 - PFLU_RS02985 0.48 +1.3
686,931 - PFLU_RS02985 0.48 -2.3
686,931 - PFLU_RS02985 0.48 -0.1
686,931 - PFLU_RS02985 0.48 -1.2
686,931 - PFLU_RS02985 0.48 -1.3
686,931 - PFLU_RS02985 0.48 -0.1
686,931 - PFLU_RS02985 0.48 +0.8

Or see this region's nucleotide sequence