Strain Fitness in Pseudomonas sp. S08-1 around OH686_17355

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_17345 and OH686_17350 are separated by 147 nucleotidesOH686_17350 and OH686_17355 are separated by 143 nucleotidesOH686_17355 and OH686_17360 are separated by 77 nucleotides OH686_17345: OH686_17345 - Two-component system sensor histidine kinase, at 3,622,480 to 3,623,793 _17345 OH686_17350: OH686_17350 - InaA protein, at 3,623,941 to 3,624,633 _17350 OH686_17355: OH686_17355 - hypothetical protein, at 3,624,777 to 3,625,013 _17355 OH686_17360: OH686_17360 - Multidrug efflux system, inner membrane proton/drug antiporter (RND type), at 3,625,091 to 3,628,144 _17360 Position (kb) 3624 3625 3626Strain fitness (log2 ratio) -2 -1 0 1at 3623.778 kb on + strandat 3623.778 kb on + strandat 3623.778 kb on + strandat 3623.778 kb on + strandat 3623.779 kb on - strandat 3623.779 kb on - strandat 3623.812 kb on - strandat 3623.846 kb on + strandat 3623.847 kb on - strandat 3623.904 kb on + strandat 3624.091 kb on + strand, within OH686_17350at 3624.092 kb on - strand, within OH686_17350at 3624.092 kb on - strand, within OH686_17350at 3624.092 kb on - strand, within OH686_17350at 3624.092 kb on - strand, within OH686_17350at 3624.092 kb on - strand, within OH686_17350at 3624.092 kb on - strand, within OH686_17350at 3624.123 kb on + strand, within OH686_17350at 3624.123 kb on + strand, within OH686_17350at 3624.123 kb on + strand, within OH686_17350at 3624.123 kb on + strand, within OH686_17350at 3624.123 kb on + strand, within OH686_17350at 3624.200 kb on + strand, within OH686_17350at 3624.200 kb on + strand, within OH686_17350at 3624.200 kb on + strand, within OH686_17350at 3624.201 kb on - strand, within OH686_17350at 3624.201 kb on - strand, within OH686_17350at 3624.207 kb on - strand, within OH686_17350at 3624.220 kb on + strand, within OH686_17350at 3624.220 kb on + strand, within OH686_17350at 3624.220 kb on + strand, within OH686_17350at 3624.220 kb on + strand, within OH686_17350at 3624.220 kb on + strand, within OH686_17350at 3624.220 kb on + strand, within OH686_17350at 3624.221 kb on - strand, within OH686_17350at 3624.221 kb on - strand, within OH686_17350at 3624.221 kb on - strand, within OH686_17350at 3624.221 kb on - strand, within OH686_17350at 3624.221 kb on - strand, within OH686_17350at 3624.221 kb on - strand, within OH686_17350at 3624.221 kb on - strand, within OH686_17350at 3624.221 kb on - strand, within OH686_17350at 3624.221 kb on - strand, within OH686_17350at 3624.235 kb on + strand, within OH686_17350at 3624.310 kb on + strand, within OH686_17350at 3624.353 kb on + strand, within OH686_17350at 3624.353 kb on + strand, within OH686_17350at 3624.353 kb on + strand, within OH686_17350at 3624.353 kb on + strand, within OH686_17350at 3624.353 kb on + strand, within OH686_17350at 3624.353 kb on + strand, within OH686_17350at 3624.353 kb on + strand, within OH686_17350at 3624.353 kb on + strand, within OH686_17350at 3624.353 kb on + strand, within OH686_17350at 3624.353 kb on + strand, within OH686_17350at 3624.353 kb on + strand, within OH686_17350at 3624.353 kb on + strand, within OH686_17350at 3624.353 kb on + strand, within OH686_17350at 3624.353 kb on + strand, within OH686_17350at 3624.353 kb on + strand, within OH686_17350at 3624.354 kb on - strand, within OH686_17350at 3624.354 kb on - strand, within OH686_17350at 3624.354 kb on - strand, within OH686_17350at 3624.354 kb on - strand, within OH686_17350at 3624.354 kb on - strand, within OH686_17350at 3624.354 kb on - strand, within OH686_17350at 3624.354 kb on - strand, within OH686_17350at 3624.354 kb on - strand, within OH686_17350at 3624.354 kb on - strand, within OH686_17350at 3624.368 kb on + strand, within OH686_17350at 3624.368 kb on + strand, within OH686_17350at 3624.368 kb on + strand, within OH686_17350at 3624.368 kb on + strand, within OH686_17350at 3624.368 kb on + strand, within OH686_17350at 3624.368 kb on + strand, within OH686_17350at 3624.368 kb on + strand, within OH686_17350at 3624.369 kb on - strand, within OH686_17350at 3624.369 kb on - strand, within OH686_17350at 3624.369 kb on - strand, within OH686_17350at 3624.369 kb on - strand, within OH686_17350at 3624.369 kb on - strand, within OH686_17350at 3624.422 kb on - strand, within OH686_17350at 3624.422 kb on - strand, within OH686_17350at 3624.422 kb on - strand, within OH686_17350at 3624.422 kb on - strand, within OH686_17350at 3624.533 kb on + strand, within OH686_17350at 3624.533 kb on + strand, within OH686_17350at 3624.533 kb on + strand, within OH686_17350at 3624.533 kb on + strand, within OH686_17350at 3624.534 kb on - strand, within OH686_17350at 3624.534 kb on - strand, within OH686_17350at 3624.534 kb on - strand, within OH686_17350at 3624.730 kb on - strandat 3624.785 kb on - strandat 3624.788 kb on + strandat 3624.871 kb on + strand, within OH686_17355at 3624.871 kb on + strand, within OH686_17355at 3624.872 kb on - strand, within OH686_17355at 3624.872 kb on - strand, within OH686_17355at 3624.976 kb on + strand, within OH686_17355at 3624.977 kb on - strand, within OH686_17355at 3624.977 kb on - strand, within OH686_17355at 3624.977 kb on - strand, within OH686_17355at 3624.977 kb on - strand, within OH686_17355at 3624.978 kb on + strand, within OH686_17355at 3624.978 kb on + strand, within OH686_17355at 3624.978 kb on + strand, within OH686_17355at 3624.978 kb on + strand, within OH686_17355at 3624.979 kb on - strand, within OH686_17355at 3624.979 kb on - strand, within OH686_17355at 3624.979 kb on - strand, within OH686_17355at 3624.979 kb on - strand, within OH686_17355at 3624.979 kb on - strand, within OH686_17355at 3625.011 kb on + strandat 3625.011 kb on + strandat 3625.011 kb on + strandat 3625.011 kb on + strandat 3625.011 kb on + strandat 3625.011 kb on + strandat 3625.011 kb on + strandat 3625.011 kb on + strandat 3625.011 kb on + strandat 3625.012 kb on - strandat 3625.012 kb on - strandat 3625.012 kb on - strandat 3625.012 kb on - strandat 3625.012 kb on - strandat 3625.012 kb on - strandat 3625.012 kb on - strandat 3625.012 kb on - strandat 3625.149 kb on + strandat 3625.149 kb on + strandat 3625.149 kb on + strandat 3625.149 kb on + strandat 3625.149 kb on + strandat 3625.150 kb on - strandat 3625.150 kb on - strandat 3625.150 kb on - strandat 3625.150 kb on - strandat 3625.150 kb on - strandat 3625.150 kb on - strandat 3625.150 kb on - strandat 3625.150 kb on - strandat 3625.150 kb on - strandat 3625.449 kb on + strand, within OH686_17360at 3625.449 kb on + strand, within OH686_17360at 3625.449 kb on + strand, within OH686_17360at 3625.449 kb on + strand, within OH686_17360at 3625.449 kb on + strand, within OH686_17360at 3625.449 kb on + strand, within OH686_17360at 3625.449 kb on + strand, within OH686_17360at 3625.449 kb on + strand, within OH686_17360at 3625.449 kb on + strand, within OH686_17360at 3625.449 kb on + strand, within OH686_17360at 3625.449 kb on + strand, within OH686_17360at 3625.449 kb on + strand, within OH686_17360at 3625.449 kb on + strand, within OH686_17360at 3625.449 kb on + strand, within OH686_17360at 3625.450 kb on - strand, within OH686_17360at 3625.450 kb on - strand, within OH686_17360at 3625.450 kb on - strand, within OH686_17360at 3625.450 kb on - strand, within OH686_17360at 3625.450 kb on - strand, within OH686_17360at 3625.450 kb on - strand, within OH686_17360at 3625.450 kb on - strand, within OH686_17360at 3625.450 kb on - strand, within OH686_17360at 3625.450 kb on - strand, within OH686_17360at 3625.450 kb on - strand, within OH686_17360at 3625.450 kb on - strand, within OH686_17360at 3625.450 kb on - strand, within OH686_17360at 3625.450 kb on - strand, within OH686_17360at 3625.629 kb on + strand, within OH686_17360at 3625.629 kb on + strand, within OH686_17360at 3625.629 kb on + strand, within OH686_17360at 3625.629 kb on + strand, within OH686_17360at 3625.629 kb on + strand, within OH686_17360at 3625.629 kb on + strand, within OH686_17360at 3625.630 kb on - strand, within OH686_17360at 3625.630 kb on - strand, within OH686_17360at 3625.630 kb on - strand, within OH686_17360at 3625.630 kb on - strand, within OH686_17360at 3625.630 kb on - strand, within OH686_17360at 3625.630 kb on - strand, within OH686_17360at 3625.630 kb on - strand, within OH686_17360at 3625.650 kb on + strand, within OH686_17360at 3625.662 kb on + strand, within OH686_17360at 3625.857 kb on + strand, within OH686_17360at 3625.857 kb on + strand, within OH686_17360at 3625.857 kb on + strand, within OH686_17360at 3625.857 kb on + strand, within OH686_17360at 3625.857 kb on + strand, within OH686_17360at 3625.858 kb on - strand, within OH686_17360at 3625.858 kb on - strand, within OH686_17360at 3625.858 kb on - strand, within OH686_17360at 3625.858 kb on - strand, within OH686_17360at 3625.858 kb on - strand, within OH686_17360at 3625.858 kb on - strand, within OH686_17360at 3625.917 kb on + strand, within OH686_17360at 3625.917 kb on + strand, within OH686_17360at 3625.917 kb on + strand, within OH686_17360at 3625.917 kb on + strand, within OH686_17360at 3625.917 kb on + strand, within OH686_17360at 3625.917 kb on + strand, within OH686_17360at 3625.917 kb on + strand, within OH686_17360at 3625.917 kb on + strand, within OH686_17360at 3625.917 kb on + strand, within OH686_17360at 3625.917 kb on + strand, within OH686_17360at 3625.917 kb on + strand, within OH686_17360at 3625.917 kb on + strand, within OH686_17360at 3625.918 kb on - strand, within OH686_17360at 3625.918 kb on - strand, within OH686_17360at 3625.918 kb on - strand, within OH686_17360at 3625.918 kb on - strand, within OH686_17360at 3625.918 kb on - strand, within OH686_17360at 3625.918 kb on - strand, within OH686_17360at 3625.918 kb on - strand, within OH686_17360at 3625.918 kb on - strand, within OH686_17360at 3625.918 kb on - strand, within OH686_17360at 3625.918 kb on - strand, within OH686_17360

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,623,778 + -1.0
3,623,778 + +0.1
3,623,778 + -0.3
3,623,778 + +0.7
3,623,779 - -0.3
3,623,779 - +0.9
3,623,812 - -1.0
3,623,846 + +0.3
3,623,847 - -0.0
3,623,904 + +0.2
3,624,091 + OH686_17350 0.22 +0.8
3,624,092 - OH686_17350 0.22 -1.3
3,624,092 - OH686_17350 0.22 -0.5
3,624,092 - OH686_17350 0.22 +0.4
3,624,092 - OH686_17350 0.22 -0.1
3,624,092 - OH686_17350 0.22 -1.3
3,624,092 - OH686_17350 0.22 -0.6
3,624,123 + OH686_17350 0.26 +0.1
3,624,123 + OH686_17350 0.26 +0.3
3,624,123 + OH686_17350 0.26 -0.1
3,624,123 + OH686_17350 0.26 -0.1
3,624,123 + OH686_17350 0.26 -0.2
3,624,200 + OH686_17350 0.37 +0.3
3,624,200 + OH686_17350 0.37 -0.9
3,624,200 + OH686_17350 0.37 -0.8
3,624,201 - OH686_17350 0.38 +0.0
3,624,201 - OH686_17350 0.38 +0.2
3,624,207 - OH686_17350 0.38 +0.1
3,624,220 + OH686_17350 0.40 -0.8
3,624,220 + OH686_17350 0.40 -0.2
3,624,220 + OH686_17350 0.40 +0.3
3,624,220 + OH686_17350 0.40 -0.2
3,624,220 + OH686_17350 0.40 +0.5
3,624,220 + OH686_17350 0.40 +0.9
3,624,221 - OH686_17350 0.40 -0.3
3,624,221 - OH686_17350 0.40 +0.6
3,624,221 - OH686_17350 0.40 +0.4
3,624,221 - OH686_17350 0.40 -0.6
3,624,221 - OH686_17350 0.40 -0.2
3,624,221 - OH686_17350 0.40 +1.7
3,624,221 - OH686_17350 0.40 -0.1
3,624,221 - OH686_17350 0.40 -0.2
3,624,221 - OH686_17350 0.40 +1.1
3,624,235 + OH686_17350 0.42 -0.2
3,624,310 + OH686_17350 0.53 +0.2
3,624,353 + OH686_17350 0.59 -0.8
3,624,353 + OH686_17350 0.59 +0.5
3,624,353 + OH686_17350 0.59 -0.5
3,624,353 + OH686_17350 0.59 -0.2
3,624,353 + OH686_17350 0.59 +1.0
3,624,353 + OH686_17350 0.59 +0.1
3,624,353 + OH686_17350 0.59 -0.2
3,624,353 + OH686_17350 0.59 -0.4
3,624,353 + OH686_17350 0.59 -0.8
3,624,353 + OH686_17350 0.59 -0.2
3,624,353 + OH686_17350 0.59 +0.4
3,624,353 + OH686_17350 0.59 +0.7
3,624,353 + OH686_17350 0.59 +0.5
3,624,353 + OH686_17350 0.59 -0.3
3,624,353 + OH686_17350 0.59 -1.4
3,624,354 - OH686_17350 0.60 -0.3
3,624,354 - OH686_17350 0.60 -0.1
3,624,354 - OH686_17350 0.60 -0.6
3,624,354 - OH686_17350 0.60 -0.4
3,624,354 - OH686_17350 0.60 -0.0
3,624,354 - OH686_17350 0.60 -0.4
3,624,354 - OH686_17350 0.60 +0.2
3,624,354 - OH686_17350 0.60 +0.3
3,624,354 - OH686_17350 0.60 -0.2
3,624,368 + OH686_17350 0.62 -0.6
3,624,368 + OH686_17350 0.62 +0.6
3,624,368 + OH686_17350 0.62 +0.3
3,624,368 + OH686_17350 0.62 -0.5
3,624,368 + OH686_17350 0.62 -0.1
3,624,368 + OH686_17350 0.62 +0.4
3,624,368 + OH686_17350 0.62 +0.1
3,624,369 - OH686_17350 0.62 -0.1
3,624,369 - OH686_17350 0.62 -0.7
3,624,369 - OH686_17350 0.62 -0.3
3,624,369 - OH686_17350 0.62 +0.3
3,624,369 - OH686_17350 0.62 -0.0
3,624,422 - OH686_17350 0.69 +0.3
3,624,422 - OH686_17350 0.69 +0.3
3,624,422 - OH686_17350 0.69 +0.1
3,624,422 - OH686_17350 0.69 -0.2
3,624,533 + OH686_17350 0.85 -0.8
3,624,533 + OH686_17350 0.85 -0.8
3,624,533 + OH686_17350 0.85 +0.5
3,624,533 + OH686_17350 0.85 -0.5
3,624,534 - OH686_17350 0.86 -0.6
3,624,534 - OH686_17350 0.86 +0.7
3,624,534 - OH686_17350 0.86 -0.2
3,624,730 - +0.2
3,624,785 - +0.2
3,624,788 + +0.7
3,624,871 + OH686_17355 0.40 -0.6
3,624,871 + OH686_17355 0.40 -0.7
3,624,872 - OH686_17355 0.40 +0.6
3,624,872 - OH686_17355 0.40 -0.4
3,624,976 + OH686_17355 0.84 -0.4
3,624,977 - OH686_17355 0.84 -0.7
3,624,977 - OH686_17355 0.84 +0.4
3,624,977 - OH686_17355 0.84 +0.7
3,624,977 - OH686_17355 0.84 +0.1
3,624,978 + OH686_17355 0.85 +0.7
3,624,978 + OH686_17355 0.85 -0.6
3,624,978 + OH686_17355 0.85 -1.0
3,624,978 + OH686_17355 0.85 +0.4
3,624,979 - OH686_17355 0.85 -0.0
3,624,979 - OH686_17355 0.85 -0.3
3,624,979 - OH686_17355 0.85 -0.6
3,624,979 - OH686_17355 0.85 +0.0
3,624,979 - OH686_17355 0.85 +0.7
3,625,011 + -0.5
3,625,011 + +0.1
3,625,011 + -0.6
3,625,011 + -0.8
3,625,011 + -0.8
3,625,011 + +0.7
3,625,011 + -0.2
3,625,011 + -0.2
3,625,011 + +0.7
3,625,012 - -0.6
3,625,012 - +0.8
3,625,012 - +1.0
3,625,012 - +1.3
3,625,012 - +0.2
3,625,012 - -0.2
3,625,012 - +0.2
3,625,012 - +1.1
3,625,149 + +0.2
3,625,149 + +0.0
3,625,149 + -0.9
3,625,149 + -0.3
3,625,149 + -0.1
3,625,150 - -1.1
3,625,150 - -0.6
3,625,150 - -0.8
3,625,150 - -1.7
3,625,150 - -0.0
3,625,150 - +0.4
3,625,150 - -1.9
3,625,150 - -0.2
3,625,150 - -0.3
3,625,449 + OH686_17360 0.12 -1.8
3,625,449 + OH686_17360 0.12 -0.3
3,625,449 + OH686_17360 0.12 +1.1
3,625,449 + OH686_17360 0.12 -0.1
3,625,449 + OH686_17360 0.12 -0.7
3,625,449 + OH686_17360 0.12 -1.1
3,625,449 + OH686_17360 0.12 +0.5
3,625,449 + OH686_17360 0.12 -1.3
3,625,449 + OH686_17360 0.12 -0.8
3,625,449 + OH686_17360 0.12 -0.7
3,625,449 + OH686_17360 0.12 +0.5
3,625,449 + OH686_17360 0.12 -0.4
3,625,449 + OH686_17360 0.12 -2.0
3,625,449 + OH686_17360 0.12 -0.7
3,625,450 - OH686_17360 0.12 +0.2
3,625,450 - OH686_17360 0.12 +0.2
3,625,450 - OH686_17360 0.12 -0.3
3,625,450 - OH686_17360 0.12 +0.1
3,625,450 - OH686_17360 0.12 +0.3
3,625,450 - OH686_17360 0.12 -1.3
3,625,450 - OH686_17360 0.12 -1.3
3,625,450 - OH686_17360 0.12 -0.1
3,625,450 - OH686_17360 0.12 +0.3
3,625,450 - OH686_17360 0.12 +0.5
3,625,450 - OH686_17360 0.12 -0.2
3,625,450 - OH686_17360 0.12 +0.5
3,625,450 - OH686_17360 0.12 +0.3
3,625,629 + OH686_17360 0.18 -1.7
3,625,629 + OH686_17360 0.18 -0.3
3,625,629 + OH686_17360 0.18 -0.4
3,625,629 + OH686_17360 0.18 -2.0
3,625,629 + OH686_17360 0.18 -0.5
3,625,629 + OH686_17360 0.18 -0.1
3,625,630 - OH686_17360 0.18 -0.5
3,625,630 - OH686_17360 0.18 -1.8
3,625,630 - OH686_17360 0.18 +0.9
3,625,630 - OH686_17360 0.18 -1.1
3,625,630 - OH686_17360 0.18 +1.7
3,625,630 - OH686_17360 0.18 +0.1
3,625,630 - OH686_17360 0.18 -1.7
3,625,650 + OH686_17360 0.18 -0.6
3,625,662 + OH686_17360 0.19 -0.4
3,625,857 + OH686_17360 0.25 -1.3
3,625,857 + OH686_17360 0.25 -0.3
3,625,857 + OH686_17360 0.25 -0.3
3,625,857 + OH686_17360 0.25 -1.2
3,625,857 + OH686_17360 0.25 -0.9
3,625,858 - OH686_17360 0.25 -0.1
3,625,858 - OH686_17360 0.25 -1.2
3,625,858 - OH686_17360 0.25 -1.5
3,625,858 - OH686_17360 0.25 -0.5
3,625,858 - OH686_17360 0.25 +0.7
3,625,858 - OH686_17360 0.25 -0.4
3,625,917 + OH686_17360 0.27 +0.9
3,625,917 + OH686_17360 0.27 -0.3
3,625,917 + OH686_17360 0.27 -1.7
3,625,917 + OH686_17360 0.27 -0.7
3,625,917 + OH686_17360 0.27 -1.1
3,625,917 + OH686_17360 0.27 -0.4
3,625,917 + OH686_17360 0.27 -0.1
3,625,917 + OH686_17360 0.27 -0.7
3,625,917 + OH686_17360 0.27 +0.7
3,625,917 + OH686_17360 0.27 -0.4
3,625,917 + OH686_17360 0.27 -2.5
3,625,917 + OH686_17360 0.27 +0.4
3,625,918 - OH686_17360 0.27 -0.7
3,625,918 - OH686_17360 0.27 -0.4
3,625,918 - OH686_17360 0.27 -2.1
3,625,918 - OH686_17360 0.27 -2.1
3,625,918 - OH686_17360 0.27 -2.6
3,625,918 - OH686_17360 0.27 -0.1
3,625,918 - OH686_17360 0.27 -1.0
3,625,918 - OH686_17360 0.27 +0.7
3,625,918 - OH686_17360 0.27 +0.5
3,625,918 - OH686_17360 0.27 -0.0

Or see this region's nucleotide sequence