Strain Fitness in Pseudomonas sp. S08-1 around OH686_14685

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_14680 and OH686_14685 overlap by 1 nucleotidesOH686_14685 and OH686_14690 overlap by 8 nucleotidesOH686_14690 and OH686_14695 overlap by 8 nucleotidesOH686_14695 and OH686_14700 overlap by 4 nucleotides OH686_14680: OH686_14680 - MSHA biogenesis protein MshI, at 3,085,407 to 3,086,324 _14680 OH686_14685: OH686_14685 - hypothetical protein, at 3,086,324 to 3,086,932 _14685 OH686_14690: OH686_14690 - hypothetical protein, at 3,086,925 to 3,087,608 _14690 OH686_14695: OH686_14695 - hypothetical protein, at 3,087,601 to 3,087,915 _14695 OH686_14700: OH686_14700 - MSHA biogenesis protein MshL, at 3,087,912 to 3,089,516 _14700 Position (kb) 3086 3087Strain fitness (log2 ratio) -3 -2 -1 0 1at 3085.328 kb on - strandat 3085.339 kb on + strandat 3085.339 kb on + strandat 3085.339 kb on + strandat 3085.339 kb on + strandat 3085.340 kb on - strandat 3085.340 kb on - strandat 3085.340 kb on - strandat 3085.340 kb on - strandat 3085.340 kb on - strandat 3085.340 kb on - strandat 3085.340 kb on - strandat 3085.447 kb on + strandat 3085.448 kb on - strandat 3085.448 kb on - strandat 3085.641 kb on + strand, within OH686_14680at 3085.641 kb on + strand, within OH686_14680at 3085.641 kb on + strand, within OH686_14680at 3085.642 kb on - strand, within OH686_14680at 3085.642 kb on - strand, within OH686_14680at 3085.642 kb on - strand, within OH686_14680at 3085.642 kb on - strand, within OH686_14680at 3085.642 kb on - strand, within OH686_14680at 3085.803 kb on + strand, within OH686_14680at 3085.803 kb on + strand, within OH686_14680at 3085.804 kb on - strand, within OH686_14680at 3085.804 kb on - strand, within OH686_14680at 3085.804 kb on - strand, within OH686_14680at 3085.881 kb on - strand, within OH686_14680at 3085.881 kb on - strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.007 kb on + strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.008 kb on - strand, within OH686_14680at 3086.009 kb on + strand, within OH686_14680at 3086.009 kb on + strand, within OH686_14680at 3086.009 kb on + strand, within OH686_14680at 3086.009 kb on + strand, within OH686_14680at 3086.010 kb on - strand, within OH686_14680at 3086.010 kb on - strand, within OH686_14680at 3086.010 kb on - strand, within OH686_14680at 3086.010 kb on - strand, within OH686_14680at 3086.010 kb on - strand, within OH686_14680at 3086.010 kb on - strand, within OH686_14680at 3086.094 kb on + strand, within OH686_14680at 3086.094 kb on + strand, within OH686_14680at 3086.094 kb on + strand, within OH686_14680at 3086.095 kb on - strand, within OH686_14680at 3086.095 kb on - strand, within OH686_14680at 3086.095 kb on - strand, within OH686_14680at 3086.121 kb on + strand, within OH686_14680at 3086.121 kb on + strand, within OH686_14680at 3086.121 kb on + strand, within OH686_14680at 3086.121 kb on + strand, within OH686_14680at 3086.121 kb on + strand, within OH686_14680at 3086.121 kb on + strand, within OH686_14680at 3086.121 kb on + strand, within OH686_14680at 3086.121 kb on + strand, within OH686_14680at 3086.121 kb on + strand, within OH686_14680at 3086.121 kb on + strand, within OH686_14680at 3086.122 kb on - strand, within OH686_14680at 3086.122 kb on - strand, within OH686_14680at 3086.122 kb on - strand, within OH686_14680at 3086.122 kb on - strand, within OH686_14680at 3086.122 kb on - strand, within OH686_14680at 3086.122 kb on - strand, within OH686_14680at 3086.122 kb on - strand, within OH686_14680at 3086.122 kb on - strand, within OH686_14680at 3086.122 kb on - strand, within OH686_14680at 3086.122 kb on - strand, within OH686_14680at 3086.122 kb on - strand, within OH686_14680at 3086.122 kb on - strand, within OH686_14680at 3086.122 kb on - strand, within OH686_14680at 3086.123 kb on + strand, within OH686_14680at 3086.123 kb on + strand, within OH686_14680at 3086.123 kb on + strand, within OH686_14680at 3086.123 kb on + strand, within OH686_14680at 3086.124 kb on - strand, within OH686_14680at 3086.124 kb on - strand, within OH686_14680at 3086.277 kb on + strandat 3086.277 kb on + strandat 3086.277 kb on + strandat 3086.277 kb on + strandat 3086.277 kb on + strandat 3086.277 kb on + strandat 3086.278 kb on - strandat 3086.278 kb on - strandat 3086.278 kb on - strandat 3086.278 kb on - strandat 3086.278 kb on - strandat 3086.342 kb on + strandat 3086.343 kb on - strandat 3086.343 kb on - strandat 3086.343 kb on - strandat 3086.343 kb on - strandat 3086.624 kb on + strand, within OH686_14685at 3086.625 kb on - strand, within OH686_14685at 3086.625 kb on - strand, within OH686_14685at 3086.625 kb on - strand, within OH686_14685at 3086.795 kb on + strand, within OH686_14685at 3086.795 kb on + strand, within OH686_14685at 3086.795 kb on + strand, within OH686_14685at 3086.796 kb on - strand, within OH686_14685at 3086.796 kb on - strand, within OH686_14685at 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.930 kb on + strandat 3086.931 kb on - strandat 3086.931 kb on - strandat 3086.931 kb on - strandat 3086.931 kb on - strandat 3086.931 kb on - strandat 3086.931 kb on - strandat 3086.931 kb on - strandat 3086.931 kb on - strandat 3086.931 kb on - strandat 3086.931 kb on - strandat 3086.931 kb on - strandat 3086.931 kb on - strandat 3086.931 kb on - strandat 3086.931 kb on - strandat 3086.931 kb on - strandat 3086.931 kb on - strandat 3086.982 kb on + strandat 3086.982 kb on + strandat 3086.982 kb on + strandat 3086.982 kb on + strandat 3086.983 kb on - strandat 3086.983 kb on - strandat 3087.015 kb on + strand, within OH686_14690at 3087.015 kb on + strand, within OH686_14690at 3087.015 kb on + strand, within OH686_14690at 3087.015 kb on + strand, within OH686_14690at 3087.015 kb on + strand, within OH686_14690at 3087.015 kb on + strand, within OH686_14690at 3087.015 kb on + strand, within OH686_14690at 3087.015 kb on + strand, within OH686_14690at 3087.015 kb on + strand, within OH686_14690at 3087.016 kb on - strand, within OH686_14690at 3087.016 kb on - strand, within OH686_14690at 3087.016 kb on - strand, within OH686_14690at 3087.016 kb on - strand, within OH686_14690at 3087.016 kb on - strand, within OH686_14690at 3087.016 kb on - strand, within OH686_14690at 3087.073 kb on + strand, within OH686_14690at 3087.124 kb on + strand, within OH686_14690at 3087.124 kb on + strand, within OH686_14690at 3087.124 kb on + strand, within OH686_14690at 3087.124 kb on + strand, within OH686_14690at 3087.124 kb on + strand, within OH686_14690at 3087.125 kb on - strand, within OH686_14690at 3087.125 kb on - strand, within OH686_14690at 3087.125 kb on - strand, within OH686_14690at 3087.411 kb on + strand, within OH686_14690at 3087.447 kb on + strand, within OH686_14690at 3087.448 kb on - strand, within OH686_14690at 3087.465 kb on + strand, within OH686_14690at 3087.465 kb on + strand, within OH686_14690at 3087.465 kb on + strand, within OH686_14690at 3087.465 kb on + strand, within OH686_14690at 3087.465 kb on + strand, within OH686_14690at 3087.466 kb on - strand, within OH686_14690at 3087.466 kb on - strand, within OH686_14690at 3087.519 kb on + strand, within OH686_14690at 3087.519 kb on + strand, within OH686_14690at 3087.519 kb on + strand, within OH686_14690at 3087.519 kb on + strand, within OH686_14690at 3087.520 kb on - strand, within OH686_14690at 3087.520 kb on - strand, within OH686_14690at 3087.520 kb on - strand, within OH686_14690at 3087.606 kb on + strandat 3087.606 kb on + strandat 3087.606 kb on + strandat 3087.606 kb on + strandat 3087.606 kb on + strandat 3087.607 kb on - strandat 3087.607 kb on - strandat 3087.607 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,085,328 - +0.2
3,085,339 + +1.1
3,085,339 + +0.2
3,085,339 + +0.4
3,085,339 + -0.5
3,085,340 - -0.3
3,085,340 - -0.3
3,085,340 - +0.2
3,085,340 - -0.2
3,085,340 - +0.3
3,085,340 - -0.3
3,085,340 - -0.4
3,085,447 + +0.2
3,085,448 - -0.6
3,085,448 - -0.7
3,085,641 + OH686_14680 0.25 -0.3
3,085,641 + OH686_14680 0.25 -0.1
3,085,641 + OH686_14680 0.25 +0.2
3,085,642 - OH686_14680 0.26 -0.4
3,085,642 - OH686_14680 0.26 +0.4
3,085,642 - OH686_14680 0.26 -0.2
3,085,642 - OH686_14680 0.26 +0.3
3,085,642 - OH686_14680 0.26 +0.8
3,085,803 + OH686_14680 0.43 -0.5
3,085,803 + OH686_14680 0.43 +0.9
3,085,804 - OH686_14680 0.43 -1.7
3,085,804 - OH686_14680 0.43 -0.3
3,085,804 - OH686_14680 0.43 +0.3
3,085,881 - OH686_14680 0.52 -0.1
3,085,881 - OH686_14680 0.52 +0.9
3,086,007 + OH686_14680 0.65 -0.2
3,086,007 + OH686_14680 0.65 +0.5
3,086,007 + OH686_14680 0.65 +0.9
3,086,007 + OH686_14680 0.65 +0.6
3,086,007 + OH686_14680 0.65 -0.6
3,086,007 + OH686_14680 0.65 -0.5
3,086,007 + OH686_14680 0.65 -0.5
3,086,007 + OH686_14680 0.65 -0.3
3,086,007 + OH686_14680 0.65 -1.8
3,086,007 + OH686_14680 0.65 +0.6
3,086,007 + OH686_14680 0.65 -0.6
3,086,007 + OH686_14680 0.65 -0.1
3,086,007 + OH686_14680 0.65 +0.1
3,086,007 + OH686_14680 0.65 -0.1
3,086,007 + OH686_14680 0.65 +0.5
3,086,007 + OH686_14680 0.65 -0.1
3,086,007 + OH686_14680 0.65 -0.2
3,086,007 + OH686_14680 0.65 +0.1
3,086,007 + OH686_14680 0.65 +0.3
3,086,007 + OH686_14680 0.65 -0.1
3,086,007 + OH686_14680 0.65 -3.4
3,086,007 + OH686_14680 0.65 +0.7
3,086,007 + OH686_14680 0.65 -1.0
3,086,007 + OH686_14680 0.65 +1.4
3,086,007 + OH686_14680 0.65 -0.2
3,086,007 + OH686_14680 0.65 -1.1
3,086,007 + OH686_14680 0.65 +0.4
3,086,007 + OH686_14680 0.65 -0.8
3,086,007 + OH686_14680 0.65 -1.3
3,086,007 + OH686_14680 0.65 +0.5
3,086,007 + OH686_14680 0.65 -0.6
3,086,008 - OH686_14680 0.65 -0.3
3,086,008 - OH686_14680 0.65 -0.4
3,086,008 - OH686_14680 0.65 +0.5
3,086,008 - OH686_14680 0.65 -0.1
3,086,008 - OH686_14680 0.65 +0.1
3,086,008 - OH686_14680 0.65 -1.8
3,086,008 - OH686_14680 0.65 -0.1
3,086,008 - OH686_14680 0.65 -1.1
3,086,008 - OH686_14680 0.65 +0.7
3,086,008 - OH686_14680 0.65 -0.5
3,086,008 - OH686_14680 0.65 +0.7
3,086,008 - OH686_14680 0.65 +0.6
3,086,008 - OH686_14680 0.65 -0.6
3,086,008 - OH686_14680 0.65 -0.2
3,086,008 - OH686_14680 0.65 +0.4
3,086,008 - OH686_14680 0.65 -0.5
3,086,008 - OH686_14680 0.65 +0.4
3,086,008 - OH686_14680 0.65 +0.8
3,086,008 - OH686_14680 0.65 -1.1
3,086,008 - OH686_14680 0.65 +0.7
3,086,009 + OH686_14680 0.66 -0.5
3,086,009 + OH686_14680 0.66 -0.5
3,086,009 + OH686_14680 0.66 -2.4
3,086,009 + OH686_14680 0.66 +0.6
3,086,010 - OH686_14680 0.66 +0.5
3,086,010 - OH686_14680 0.66 +0.3
3,086,010 - OH686_14680 0.66 -0.7
3,086,010 - OH686_14680 0.66 -0.8
3,086,010 - OH686_14680 0.66 -0.8
3,086,010 - OH686_14680 0.66 +0.1
3,086,094 + OH686_14680 0.75 -0.4
3,086,094 + OH686_14680 0.75 -1.4
3,086,094 + OH686_14680 0.75 +0.5
3,086,095 - OH686_14680 0.75 +0.1
3,086,095 - OH686_14680 0.75 +0.3
3,086,095 - OH686_14680 0.75 -0.3
3,086,121 + OH686_14680 0.78 +0.0
3,086,121 + OH686_14680 0.78 +0.6
3,086,121 + OH686_14680 0.78 +1.4
3,086,121 + OH686_14680 0.78 -0.2
3,086,121 + OH686_14680 0.78 -0.5
3,086,121 + OH686_14680 0.78 -0.3
3,086,121 + OH686_14680 0.78 +0.1
3,086,121 + OH686_14680 0.78 +0.6
3,086,121 + OH686_14680 0.78 -0.2
3,086,121 + OH686_14680 0.78 -0.1
3,086,122 - OH686_14680 0.78 +0.6
3,086,122 - OH686_14680 0.78 +1.0
3,086,122 - OH686_14680 0.78 +0.3
3,086,122 - OH686_14680 0.78 +0.5
3,086,122 - OH686_14680 0.78 -0.5
3,086,122 - OH686_14680 0.78 -0.3
3,086,122 - OH686_14680 0.78 +0.3
3,086,122 - OH686_14680 0.78 -0.4
3,086,122 - OH686_14680 0.78 +0.2
3,086,122 - OH686_14680 0.78 +0.3
3,086,122 - OH686_14680 0.78 +1.2
3,086,122 - OH686_14680 0.78 -0.3
3,086,122 - OH686_14680 0.78 +0.9
3,086,123 + OH686_14680 0.78 +0.3
3,086,123 + OH686_14680 0.78 -0.6
3,086,123 + OH686_14680 0.78 -0.3
3,086,123 + OH686_14680 0.78 +0.4
3,086,124 - OH686_14680 0.78 +1.3
3,086,124 - OH686_14680 0.78 -0.4
3,086,277 + +0.2
3,086,277 + +0.4
3,086,277 + +0.1
3,086,277 + +0.1
3,086,277 + +0.6
3,086,277 + +0.2
3,086,278 - -2.3
3,086,278 - -1.6
3,086,278 - -0.9
3,086,278 - -0.6
3,086,278 - -0.0
3,086,342 + -0.5
3,086,343 - -0.1
3,086,343 - +0.2
3,086,343 - +0.0
3,086,343 - -0.7
3,086,624 + OH686_14685 0.49 -0.0
3,086,625 - OH686_14685 0.49 -0.2
3,086,625 - OH686_14685 0.49 +0.1
3,086,625 - OH686_14685 0.49 -0.3
3,086,795 + OH686_14685 0.77 -0.4
3,086,795 + OH686_14685 0.77 -0.5
3,086,795 + OH686_14685 0.77 -1.3
3,086,796 - OH686_14685 0.78 -0.8
3,086,796 - OH686_14685 0.78 -0.8
3,086,930 + -0.3
3,086,930 + -0.5
3,086,930 + -1.3
3,086,930 + +0.4
3,086,930 + +0.2
3,086,930 + -0.3
3,086,930 + -0.0
3,086,930 + -0.3
3,086,930 + -1.5
3,086,930 + +1.4
3,086,930 + -0.3
3,086,930 + -0.6
3,086,930 + -0.2
3,086,930 + -0.6
3,086,930 + -0.6
3,086,930 + +0.2
3,086,930 + +0.4
3,086,930 + -0.2
3,086,930 + +0.6
3,086,930 + +0.4
3,086,930 + -0.3
3,086,930 + -0.3
3,086,930 + +0.7
3,086,930 + -0.3
3,086,930 + -0.1
3,086,931 - +0.1
3,086,931 - +0.2
3,086,931 - +1.3
3,086,931 - +0.4
3,086,931 - -0.2
3,086,931 - +0.1
3,086,931 - -1.3
3,086,931 - -0.4
3,086,931 - -0.2
3,086,931 - -0.4
3,086,931 - +0.3
3,086,931 - +0.8
3,086,931 - -0.2
3,086,931 - -0.7
3,086,931 - -0.2
3,086,931 - -0.1
3,086,982 + -0.4
3,086,982 + -0.3
3,086,982 + +0.0
3,086,982 + -0.6
3,086,983 - +0.5
3,086,983 - +0.4
3,087,015 + OH686_14690 0.13 +0.5
3,087,015 + OH686_14690 0.13 -1.8
3,087,015 + OH686_14690 0.13 +0.5
3,087,015 + OH686_14690 0.13 +0.6
3,087,015 + OH686_14690 0.13 +1.4
3,087,015 + OH686_14690 0.13 +1.3
3,087,015 + OH686_14690 0.13 -0.4
3,087,015 + OH686_14690 0.13 -0.6
3,087,015 + OH686_14690 0.13 -0.3
3,087,016 - OH686_14690 0.13 +0.3
3,087,016 - OH686_14690 0.13 +0.7
3,087,016 - OH686_14690 0.13 -0.3
3,087,016 - OH686_14690 0.13 -0.6
3,087,016 - OH686_14690 0.13 -0.3
3,087,016 - OH686_14690 0.13 -0.5
3,087,073 + OH686_14690 0.22 -0.7
3,087,124 + OH686_14690 0.29 -2.7
3,087,124 + OH686_14690 0.29 -0.5
3,087,124 + OH686_14690 0.29 -0.3
3,087,124 + OH686_14690 0.29 -0.3
3,087,124 + OH686_14690 0.29 -0.7
3,087,125 - OH686_14690 0.29 -0.7
3,087,125 - OH686_14690 0.29 +0.2
3,087,125 - OH686_14690 0.29 +0.5
3,087,411 + OH686_14690 0.71 +0.4
3,087,447 + OH686_14690 0.76 +0.4
3,087,448 - OH686_14690 0.76 +1.5
3,087,465 + OH686_14690 0.79 +0.4
3,087,465 + OH686_14690 0.79 -0.5
3,087,465 + OH686_14690 0.79 +0.5
3,087,465 + OH686_14690 0.79 +1.3
3,087,465 + OH686_14690 0.79 +0.0
3,087,466 - OH686_14690 0.79 +0.1
3,087,466 - OH686_14690 0.79 +0.5
3,087,519 + OH686_14690 0.87 +0.5
3,087,519 + OH686_14690 0.87 -0.2
3,087,519 + OH686_14690 0.87 -1.6
3,087,519 + OH686_14690 0.87 -1.1
3,087,520 - OH686_14690 0.87 +0.3
3,087,520 - OH686_14690 0.87 +0.3
3,087,520 - OH686_14690 0.87 +0.1
3,087,606 + +0.3
3,087,606 + -0.4
3,087,606 + +1.5
3,087,606 + +1.0
3,087,606 + +0.7
3,087,607 - -0.2
3,087,607 - -0.9
3,087,607 - -0.3

Or see this region's nucleotide sequence