Strain Fitness in Pseudomonas sp. S08-1 around OH686_00940

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_00935 and OH686_00940 are separated by 11 nucleotidesOH686_00940 and OH686_00945 are separated by 19 nucleotidesOH686_00945 and OH686_00950 are separated by 90 nucleotides OH686_00935: OH686_00935 - Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system, at 190,806 to 192,254 _00935 OH686_00940: OH686_00940 - hypothetical protein' product='hypothetical protein, at 192,266 to 192,508 _00940 OH686_00945: OH686_00945 - hypothetical protein, at 192,528 to 192,977 _00945 OH686_00950: OH686_00950 - Maleylacetoacetate isomerase or Glutathione S-transferase, at 193,068 to 193,727 _00950 Position (kb) 192 193Strain fitness (log2 ratio) -2 -1 0 1at 191.341 kb on + strand, within OH686_00935at 191.341 kb on + strand, within OH686_00935at 191.341 kb on + strand, within OH686_00935at 191.341 kb on + strand, within OH686_00935at 191.342 kb on - strand, within OH686_00935at 191.342 kb on - strand, within OH686_00935at 191.342 kb on - strand, within OH686_00935at 191.342 kb on - strand, within OH686_00935at 191.376 kb on + strand, within OH686_00935at 191.376 kb on + strand, within OH686_00935at 191.376 kb on + strand, within OH686_00935at 191.376 kb on + strand, within OH686_00935at 191.376 kb on + strand, within OH686_00935at 191.377 kb on - strand, within OH686_00935at 191.436 kb on + strand, within OH686_00935at 191.436 kb on + strand, within OH686_00935at 191.437 kb on - strand, within OH686_00935at 191.469 kb on + strand, within OH686_00935at 191.470 kb on - strand, within OH686_00935at 191.470 kb on - strand, within OH686_00935at 191.470 kb on - strand, within OH686_00935at 191.470 kb on - strand, within OH686_00935at 191.470 kb on - strand, within OH686_00935at 191.470 kb on - strand, within OH686_00935at 191.470 kb on - strand, within OH686_00935at 191.642 kb on - strand, within OH686_00935at 191.766 kb on + strand, within OH686_00935at 191.766 kb on + strand, within OH686_00935at 191.766 kb on + strand, within OH686_00935at 191.767 kb on - strand, within OH686_00935at 191.767 kb on - strand, within OH686_00935at 191.767 kb on - strand, within OH686_00935at 191.767 kb on - strand, within OH686_00935at 191.767 kb on - strand, within OH686_00935at 191.770 kb on - strand, within OH686_00935at 191.770 kb on - strand, within OH686_00935at 191.802 kb on + strand, within OH686_00935at 191.931 kb on + strand, within OH686_00935at 191.931 kb on + strand, within OH686_00935at 191.931 kb on + strand, within OH686_00935at 191.932 kb on - strand, within OH686_00935at 191.932 kb on - strand, within OH686_00935at 191.932 kb on - strand, within OH686_00935at 191.994 kb on + strand, within OH686_00935at 191.994 kb on + strand, within OH686_00935at 191.994 kb on + strand, within OH686_00935at 191.994 kb on + strand, within OH686_00935at 191.994 kb on + strand, within OH686_00935at 191.995 kb on - strand, within OH686_00935at 192.091 kb on - strand, within OH686_00935at 192.158 kb on + strandat 192.159 kb on - strandat 192.252 kb on + strandat 192.252 kb on + strandat 192.252 kb on + strandat 192.252 kb on + strandat 192.252 kb on + strandat 192.252 kb on + strandat 192.252 kb on + strandat 192.253 kb on - strandat 192.253 kb on - strandat 192.253 kb on - strandat 192.253 kb on - strandat 192.253 kb on - strandat 192.272 kb on + strandat 192.272 kb on + strandat 192.272 kb on + strandat 192.272 kb on + strandat 192.273 kb on - strandat 192.273 kb on - strandat 192.273 kb on - strandat 192.273 kb on - strandat 192.273 kb on - strandat 192.293 kb on - strand, within OH686_00940at 192.293 kb on - strand, within OH686_00940at 192.332 kb on - strand, within OH686_00940at 192.354 kb on + strand, within OH686_00940at 192.354 kb on + strand, within OH686_00940at 192.354 kb on + strand, within OH686_00940at 192.354 kb on + strand, within OH686_00940at 192.355 kb on - strand, within OH686_00940at 192.355 kb on - strand, within OH686_00940at 192.355 kb on - strand, within OH686_00940at 192.387 kb on + strand, within OH686_00940at 192.387 kb on + strand, within OH686_00940at 192.506 kb on + strandat 192.506 kb on + strandat 192.507 kb on - strandat 192.507 kb on - strandat 192.507 kb on - strandat 192.507 kb on - strandat 192.507 kb on - strandat 192.552 kb on - strandat 192.721 kb on + strand, within OH686_00945at 192.721 kb on + strand, within OH686_00945at 192.721 kb on + strand, within OH686_00945at 192.721 kb on + strand, within OH686_00945at 192.721 kb on + strand, within OH686_00945at 192.721 kb on + strand, within OH686_00945at 192.722 kb on - strand, within OH686_00945at 192.722 kb on - strand, within OH686_00945at 192.722 kb on - strand, within OH686_00945at 192.722 kb on - strand, within OH686_00945at 192.722 kb on - strand, within OH686_00945at 192.722 kb on - strand, within OH686_00945at 192.722 kb on - strand, within OH686_00945at 192.722 kb on - strand, within OH686_00945at 192.722 kb on - strand, within OH686_00945at 192.722 kb on - strand, within OH686_00945at 192.722 kb on - strand, within OH686_00945at 192.763 kb on + strand, within OH686_00945at 192.763 kb on + strand, within OH686_00945at 192.763 kb on + strand, within OH686_00945at 192.764 kb on - strand, within OH686_00945at 192.764 kb on - strand, within OH686_00945at 192.764 kb on - strand, within OH686_00945at 192.886 kb on + strand, within OH686_00945at 192.886 kb on + strand, within OH686_00945at 192.886 kb on + strand, within OH686_00945at 192.886 kb on + strand, within OH686_00945at 192.887 kb on - strand, within OH686_00945at 192.887 kb on - strand, within OH686_00945at 192.990 kb on + strandat 192.990 kb on + strandat 192.991 kb on - strandat 192.991 kb on - strandat 192.991 kb on - strandat 192.991 kb on - strandat 192.991 kb on - strandat 193.017 kb on + strandat 193.168 kb on + strand, within OH686_00950at 193.168 kb on + strand, within OH686_00950at 193.168 kb on + strand, within OH686_00950at 193.168 kb on + strand, within OH686_00950at 193.169 kb on - strand, within OH686_00950at 193.219 kb on + strand, within OH686_00950at 193.219 kb on + strand, within OH686_00950at 193.219 kb on + strand, within OH686_00950at 193.219 kb on + strand, within OH686_00950at 193.219 kb on + strand, within OH686_00950at 193.219 kb on + strand, within OH686_00950at 193.219 kb on + strand, within OH686_00950at 193.219 kb on + strand, within OH686_00950at 193.220 kb on - strand, within OH686_00950at 193.220 kb on - strand, within OH686_00950at 193.220 kb on - strand, within OH686_00950at 193.220 kb on - strand, within OH686_00950at 193.220 kb on - strand, within OH686_00950at 193.220 kb on - strand, within OH686_00950at 193.313 kb on - strand, within OH686_00950at 193.313 kb on - strand, within OH686_00950at 193.352 kb on - strand, within OH686_00950at 193.352 kb on - strand, within OH686_00950at 193.417 kb on + strand, within OH686_00950at 193.417 kb on + strand, within OH686_00950at 193.417 kb on + strand, within OH686_00950at 193.417 kb on + strand, within OH686_00950at 193.417 kb on + strand, within OH686_00950at 193.417 kb on + strand, within OH686_00950at 193.417 kb on + strand, within OH686_00950at 193.417 kb on + strand, within OH686_00950at 193.417 kb on + strand, within OH686_00950at 193.417 kb on + strand, within OH686_00950at 193.417 kb on + strand, within OH686_00950at 193.417 kb on + strand, within OH686_00950at 193.417 kb on + strand, within OH686_00950at 193.417 kb on + strand, within OH686_00950at 193.418 kb on - strand, within OH686_00950at 193.418 kb on - strand, within OH686_00950at 193.418 kb on - strand, within OH686_00950at 193.418 kb on - strand, within OH686_00950at 193.418 kb on - strand, within OH686_00950at 193.418 kb on - strand, within OH686_00950at 193.418 kb on - strand, within OH686_00950at 193.418 kb on - strand, within OH686_00950at 193.418 kb on - strand, within OH686_00950at 193.446 kb on + strand, within OH686_00950at 193.446 kb on + strand, within OH686_00950at 193.446 kb on + strand, within OH686_00950at 193.446 kb on + strand, within OH686_00950at 193.446 kb on + strand, within OH686_00950at 193.447 kb on - strand, within OH686_00950at 193.447 kb on - strand, within OH686_00950

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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191,341 + OH686_00935 0.37 -0.4
191,341 + OH686_00935 0.37 +1.1
191,341 + OH686_00935 0.37 -1.2
191,341 + OH686_00935 0.37 -0.5
191,342 - OH686_00935 0.37 -0.8
191,342 - OH686_00935 0.37 -1.2
191,342 - OH686_00935 0.37 -1.6
191,342 - OH686_00935 0.37 -0.5
191,376 + OH686_00935 0.39 +0.9
191,376 + OH686_00935 0.39 +1.5
191,376 + OH686_00935 0.39 +0.7
191,376 + OH686_00935 0.39 +0.1
191,376 + OH686_00935 0.39 +0.6
191,377 - OH686_00935 0.39 -0.4
191,436 + OH686_00935 0.43 +0.1
191,436 + OH686_00935 0.43 -1.1
191,437 - OH686_00935 0.44 -0.6
191,469 + OH686_00935 0.46 -0.5
191,470 - OH686_00935 0.46 -0.9
191,470 - OH686_00935 0.46 -0.0
191,470 - OH686_00935 0.46 -1.2
191,470 - OH686_00935 0.46 -0.6
191,470 - OH686_00935 0.46 +0.3
191,470 - OH686_00935 0.46 -2.2
191,470 - OH686_00935 0.46 +0.9
191,642 - OH686_00935 0.58 -1.8
191,766 + OH686_00935 0.66 -0.5
191,766 + OH686_00935 0.66 +0.9
191,766 + OH686_00935 0.66 -0.1
191,767 - OH686_00935 0.66 -2.1
191,767 - OH686_00935 0.66 -0.2
191,767 - OH686_00935 0.66 +0.0
191,767 - OH686_00935 0.66 +0.1
191,767 - OH686_00935 0.66 -0.7
191,770 - OH686_00935 0.67 -0.1
191,770 - OH686_00935 0.67 +0.0
191,802 + OH686_00935 0.69 +1.4
191,931 + OH686_00935 0.78 +0.2
191,931 + OH686_00935 0.78 +1.7
191,931 + OH686_00935 0.78 -0.3
191,932 - OH686_00935 0.78 -0.3
191,932 - OH686_00935 0.78 +0.3
191,932 - OH686_00935 0.78 +1.5
191,994 + OH686_00935 0.82 +0.0
191,994 + OH686_00935 0.82 -0.6
191,994 + OH686_00935 0.82 -0.0
191,994 + OH686_00935 0.82 -0.3
191,994 + OH686_00935 0.82 +0.8
191,995 - OH686_00935 0.82 -0.5
192,091 - OH686_00935 0.89 -0.2
192,158 + -1.9
192,159 - -0.8
192,252 + +0.7
192,252 + +0.3
192,252 + -0.1
192,252 + -1.7
192,252 + -0.4
192,252 + +1.3
192,252 + +0.8
192,253 - -0.4
192,253 - -1.5
192,253 - +1.7
192,253 - -0.5
192,253 - -2.6
192,272 + -0.3
192,272 + -0.3
192,272 + -0.2
192,272 + -0.2
192,273 - +0.1
192,273 - +1.0
192,273 - -0.6
192,273 - -1.4
192,273 - -0.4
192,293 - OH686_00940 0.11 +1.4
192,293 - OH686_00940 0.11 +0.7
192,332 - OH686_00940 0.27 -0.7
192,354 + OH686_00940 0.36 +0.2
192,354 + OH686_00940 0.36 +0.1
192,354 + OH686_00940 0.36 -0.4
192,354 + OH686_00940 0.36 +0.6
192,355 - OH686_00940 0.37 +1.1
192,355 - OH686_00940 0.37 -1.1
192,355 - OH686_00940 0.37 -0.1
192,387 + OH686_00940 0.50 -0.4
192,387 + OH686_00940 0.50 +0.1
192,506 + +1.0
192,506 + -0.2
192,507 - -0.2
192,507 - +0.2
192,507 - -0.9
192,507 - +0.2
192,507 - -0.5
192,552 - +0.3
192,721 + OH686_00945 0.43 -0.2
192,721 + OH686_00945 0.43 +1.1
192,721 + OH686_00945 0.43 +0.8
192,721 + OH686_00945 0.43 +0.3
192,721 + OH686_00945 0.43 +1.0
192,721 + OH686_00945 0.43 -0.4
192,722 - OH686_00945 0.43 +0.5
192,722 - OH686_00945 0.43 +0.8
192,722 - OH686_00945 0.43 -0.1
192,722 - OH686_00945 0.43 +0.6
192,722 - OH686_00945 0.43 +0.3
192,722 - OH686_00945 0.43 -0.4
192,722 - OH686_00945 0.43 -0.3
192,722 - OH686_00945 0.43 -0.2
192,722 - OH686_00945 0.43 +0.8
192,722 - OH686_00945 0.43 -0.8
192,722 - OH686_00945 0.43 -0.8
192,763 + OH686_00945 0.52 +0.5
192,763 + OH686_00945 0.52 +0.5
192,763 + OH686_00945 0.52 -0.1
192,764 - OH686_00945 0.52 +0.4
192,764 - OH686_00945 0.52 +0.1
192,764 - OH686_00945 0.52 +1.2
192,886 + OH686_00945 0.80 -0.5
192,886 + OH686_00945 0.80 -0.0
192,886 + OH686_00945 0.80 +0.4
192,886 + OH686_00945 0.80 +0.0
192,887 - OH686_00945 0.80 -0.0
192,887 - OH686_00945 0.80 +0.4
192,990 + -0.4
192,990 + -0.5
192,991 - -1.5
192,991 - -0.4
192,991 - +0.8
192,991 - +0.0
192,991 - -0.4
193,017 + +1.3
193,168 + OH686_00950 0.15 +0.1
193,168 + OH686_00950 0.15 +0.1
193,168 + OH686_00950 0.15 +0.7
193,168 + OH686_00950 0.15 +0.5
193,169 - OH686_00950 0.15 +0.6
193,219 + OH686_00950 0.23 -0.9
193,219 + OH686_00950 0.23 +0.1
193,219 + OH686_00950 0.23 +0.1
193,219 + OH686_00950 0.23 +0.5
193,219 + OH686_00950 0.23 -0.3
193,219 + OH686_00950 0.23 -0.3
193,219 + OH686_00950 0.23 +0.6
193,219 + OH686_00950 0.23 -0.2
193,220 - OH686_00950 0.23 -0.6
193,220 - OH686_00950 0.23 -0.3
193,220 - OH686_00950 0.23 +0.7
193,220 - OH686_00950 0.23 +0.1
193,220 - OH686_00950 0.23 -0.8
193,220 - OH686_00950 0.23 -0.4
193,313 - OH686_00950 0.37 -0.2
193,313 - OH686_00950 0.37 -0.4
193,352 - OH686_00950 0.43 -1.6
193,352 - OH686_00950 0.43 -0.3
193,417 + OH686_00950 0.53 -0.6
193,417 + OH686_00950 0.53 -0.7
193,417 + OH686_00950 0.53 -0.9
193,417 + OH686_00950 0.53 +1.1
193,417 + OH686_00950 0.53 +0.2
193,417 + OH686_00950 0.53 -0.3
193,417 + OH686_00950 0.53 +0.2
193,417 + OH686_00950 0.53 -0.7
193,417 + OH686_00950 0.53 -0.6
193,417 + OH686_00950 0.53 +0.8
193,417 + OH686_00950 0.53 -0.8
193,417 + OH686_00950 0.53 -0.3
193,417 + OH686_00950 0.53 -1.3
193,417 + OH686_00950 0.53 +0.4
193,418 - OH686_00950 0.53 -0.6
193,418 - OH686_00950 0.53 +0.1
193,418 - OH686_00950 0.53 -0.0
193,418 - OH686_00950 0.53 -0.1
193,418 - OH686_00950 0.53 +0.1
193,418 - OH686_00950 0.53 -0.7
193,418 - OH686_00950 0.53 -1.1
193,418 - OH686_00950 0.53 -0.7
193,418 - OH686_00950 0.53 +1.1
193,446 + OH686_00950 0.57 -0.6
193,446 + OH686_00950 0.57 +0.0
193,446 + OH686_00950 0.57 -0.1
193,446 + OH686_00950 0.57 +0.1
193,446 + OH686_00950 0.57 -1.3
193,447 - OH686_00950 0.57 -0.2
193,447 - OH686_00950 0.57 +0.0

Or see this region's nucleotide sequence