Strain Fitness in Pseudomonas sp. S08-1 around OH686_00825

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_00820 and OH686_00825 are separated by 82 nucleotidesOH686_00825 and OH686_00830 are separated by 302 nucleotides OH686_00820: OH686_00820 - D-beta-hydroxybutyrate permease, at 160,765 to 162,156 _00820 OH686_00825: OH686_00825 - Outer membrane low permeability porin, OprD family, at 162,239 to 163,495 _00825 OH686_00830: OH686_00830 - Transcriptional regulator, at 163,798 to 165,207 _00830 Position (kb) 162 163 164Strain fitness (log2 ratio) -2 -1 0 1at 161.390 kb on + strand, within OH686_00820at 161.390 kb on + strand, within OH686_00820at 161.390 kb on + strand, within OH686_00820at 161.390 kb on + strand, within OH686_00820at 161.390 kb on + strand, within OH686_00820at 161.390 kb on + strand, within OH686_00820at 161.391 kb on - strand, within OH686_00820at 161.391 kb on - strand, within OH686_00820at 161.522 kb on + strand, within OH686_00820at 161.567 kb on + strand, within OH686_00820at 161.567 kb on + strand, within OH686_00820at 161.567 kb on + strand, within OH686_00820at 161.567 kb on + strand, within OH686_00820at 161.567 kb on + strand, within OH686_00820at 161.567 kb on + strand, within OH686_00820at 161.567 kb on + strand, within OH686_00820at 161.568 kb on - strand, within OH686_00820at 161.568 kb on - strand, within OH686_00820at 161.568 kb on - strand, within OH686_00820at 161.568 kb on - strand, within OH686_00820at 161.825 kb on + strand, within OH686_00820at 161.825 kb on + strand, within OH686_00820at 161.825 kb on + strand, within OH686_00820at 161.825 kb on + strand, within OH686_00820at 161.825 kb on + strand, within OH686_00820at 161.826 kb on - strand, within OH686_00820at 161.826 kb on - strand, within OH686_00820at 161.826 kb on - strand, within OH686_00820at 161.826 kb on - strand, within OH686_00820at 161.826 kb on - strand, within OH686_00820at 161.826 kb on - strand, within OH686_00820at 161.826 kb on - strand, within OH686_00820at 161.972 kb on + strand, within OH686_00820at 161.972 kb on + strand, within OH686_00820at 161.972 kb on + strand, within OH686_00820at 161.972 kb on + strand, within OH686_00820at 161.972 kb on + strand, within OH686_00820at 161.973 kb on - strand, within OH686_00820at 161.973 kb on - strand, within OH686_00820at 161.973 kb on - strand, within OH686_00820at 161.973 kb on - strand, within OH686_00820at 162.095 kb on + strandat 162.096 kb on - strandat 162.162 kb on + strandat 162.162 kb on + strandat 162.162 kb on + strandat 162.162 kb on + strandat 162.162 kb on + strandat 162.162 kb on + strandat 162.162 kb on + strandat 162.163 kb on - strandat 162.163 kb on - strandat 162.163 kb on - strandat 162.240 kb on + strandat 162.259 kb on - strandat 162.259 kb on - strandat 162.259 kb on - strandat 162.259 kb on - strandat 162.259 kb on - strandat 162.259 kb on - strandat 162.259 kb on - strandat 162.259 kb on - strandat 162.259 kb on - strandat 162.259 kb on - strandat 162.259 kb on - strandat 162.259 kb on - strandat 162.259 kb on - strandat 162.259 kb on - strandat 162.369 kb on + strand, within OH686_00825at 162.369 kb on + strand, within OH686_00825at 162.369 kb on + strand, within OH686_00825at 162.370 kb on - strand, within OH686_00825at 162.370 kb on - strand, within OH686_00825at 162.370 kb on - strand, within OH686_00825at 162.370 kb on - strand, within OH686_00825at 162.370 kb on - strand, within OH686_00825at 162.370 kb on - strand, within OH686_00825at 162.370 kb on - strand, within OH686_00825at 162.370 kb on - strand, within OH686_00825at 162.448 kb on - strand, within OH686_00825at 162.502 kb on - strand, within OH686_00825at 162.588 kb on + strand, within OH686_00825at 162.588 kb on + strand, within OH686_00825at 162.588 kb on + strand, within OH686_00825at 162.588 kb on + strand, within OH686_00825at 162.588 kb on + strand, within OH686_00825at 162.588 kb on + strand, within OH686_00825at 162.589 kb on - strand, within OH686_00825at 162.589 kb on - strand, within OH686_00825at 162.589 kb on - strand, within OH686_00825at 162.654 kb on + strand, within OH686_00825at 162.654 kb on + strand, within OH686_00825at 162.654 kb on + strand, within OH686_00825at 162.655 kb on - strand, within OH686_00825at 162.655 kb on - strand, within OH686_00825at 162.655 kb on - strand, within OH686_00825at 162.655 kb on - strand, within OH686_00825at 162.655 kb on - strand, within OH686_00825at 162.655 kb on - strand, within OH686_00825at 162.761 kb on + strand, within OH686_00825at 162.762 kb on - strand, within OH686_00825at 162.762 kb on - strand, within OH686_00825at 162.762 kb on - strand, within OH686_00825at 162.762 kb on - strand, within OH686_00825at 162.762 kb on - strand, within OH686_00825at 162.796 kb on - strand, within OH686_00825at 162.796 kb on - strand, within OH686_00825at 162.816 kb on + strand, within OH686_00825at 162.816 kb on + strand, within OH686_00825at 162.816 kb on + strand, within OH686_00825at 162.816 kb on + strand, within OH686_00825at 162.816 kb on + strand, within OH686_00825at 162.816 kb on + strand, within OH686_00825at 162.817 kb on - strand, within OH686_00825at 162.817 kb on - strand, within OH686_00825at 162.817 kb on - strand, within OH686_00825at 162.852 kb on + strand, within OH686_00825at 162.852 kb on + strand, within OH686_00825at 162.852 kb on + strand, within OH686_00825at 162.852 kb on + strand, within OH686_00825at 162.853 kb on - strand, within OH686_00825at 162.853 kb on - strand, within OH686_00825at 162.853 kb on - strand, within OH686_00825at 163.152 kb on + strand, within OH686_00825at 163.152 kb on + strand, within OH686_00825at 163.153 kb on - strand, within OH686_00825at 163.153 kb on - strand, within OH686_00825at 163.153 kb on - strand, within OH686_00825at 163.300 kb on - strand, within OH686_00825at 163.377 kb on + strandat 163.378 kb on - strandat 163.378 kb on - strandat 163.378 kb on - strandat 163.378 kb on - strandat 163.444 kb on + strandat 163.445 kb on - strandat 163.567 kb on + strandat 163.567 kb on + strandat 163.567 kb on + strandat 163.568 kb on - strandat 163.568 kb on - strandat 163.568 kb on - strandat 163.568 kb on - strandat 163.568 kb on - strandat 163.568 kb on - strandat 163.568 kb on - strandat 163.568 kb on - strandat 163.568 kb on - strandat 163.568 kb on - strandat 163.568 kb on - strandat 163.580 kb on - strandat 163.588 kb on + strandat 163.588 kb on + strandat 163.588 kb on + strandat 163.588 kb on + strandat 163.588 kb on + strandat 163.588 kb on + strandat 163.588 kb on + strandat 163.588 kb on + strandat 163.588 kb on + strandat 163.589 kb on - strandat 163.589 kb on - strandat 163.589 kb on - strandat 163.589 kb on - strandat 163.658 kb on - strandat 163.778 kb on + strandat 163.797 kb on - strandat 163.797 kb on - strandat 163.797 kb on - strandat 163.832 kb on + strandat 163.832 kb on + strandat 163.832 kb on + strandat 163.832 kb on + strandat 163.832 kb on + strandat 163.832 kb on + strandat 163.833 kb on - strandat 163.833 kb on - strandat 164.041 kb on + strand, within OH686_00830at 164.041 kb on + strand, within OH686_00830at 164.041 kb on + strand, within OH686_00830at 164.041 kb on + strand, within OH686_00830at 164.041 kb on + strand, within OH686_00830at 164.041 kb on + strand, within OH686_00830at 164.042 kb on - strand, within OH686_00830at 164.042 kb on - strand, within OH686_00830at 164.249 kb on - strand, within OH686_00830at 164.255 kb on + strand, within OH686_00830at 164.256 kb on - strand, within OH686_00830at 164.256 kb on - strand, within OH686_00830at 164.258 kb on + strand, within OH686_00830at 164.258 kb on + strand, within OH686_00830at 164.258 kb on + strand, within OH686_00830at 164.258 kb on + strand, within OH686_00830at 164.258 kb on + strand, within OH686_00830at 164.258 kb on + strand, within OH686_00830at 164.258 kb on + strand, within OH686_00830at 164.259 kb on - strand, within OH686_00830at 164.259 kb on - strand, within OH686_00830at 164.259 kb on - strand, within OH686_00830at 164.259 kb on - strand, within OH686_00830at 164.259 kb on - strand, within OH686_00830at 164.259 kb on - strand, within OH686_00830at 164.344 kb on + strand, within OH686_00830at 164.344 kb on + strand, within OH686_00830at 164.345 kb on - strand, within OH686_00830at 164.345 kb on - strand, within OH686_00830at 164.345 kb on - strand, within OH686_00830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
161,390 + OH686_00820 0.45 -0.4
161,390 + OH686_00820 0.45 -0.2
161,390 + OH686_00820 0.45 -0.3
161,390 + OH686_00820 0.45 -0.7
161,390 + OH686_00820 0.45 +0.9
161,390 + OH686_00820 0.45 -0.9
161,391 - OH686_00820 0.45 +0.3
161,391 - OH686_00820 0.45 -0.4
161,522 + OH686_00820 0.54 -0.1
161,567 + OH686_00820 0.58 -0.2
161,567 + OH686_00820 0.58 -0.2
161,567 + OH686_00820 0.58 -0.0
161,567 + OH686_00820 0.58 +0.7
161,567 + OH686_00820 0.58 +0.7
161,567 + OH686_00820 0.58 +0.3
161,567 + OH686_00820 0.58 +1.0
161,568 - OH686_00820 0.58 +0.2
161,568 - OH686_00820 0.58 +1.4
161,568 - OH686_00820 0.58 -0.2
161,568 - OH686_00820 0.58 +1.3
161,825 + OH686_00820 0.76 -0.3
161,825 + OH686_00820 0.76 -0.1
161,825 + OH686_00820 0.76 +0.0
161,825 + OH686_00820 0.76 +0.8
161,825 + OH686_00820 0.76 +0.8
161,826 - OH686_00820 0.76 -1.5
161,826 - OH686_00820 0.76 +0.5
161,826 - OH686_00820 0.76 +0.3
161,826 - OH686_00820 0.76 -2.1
161,826 - OH686_00820 0.76 -0.7
161,826 - OH686_00820 0.76 +0.0
161,826 - OH686_00820 0.76 -0.2
161,972 + OH686_00820 0.87 -0.1
161,972 + OH686_00820 0.87 +0.1
161,972 + OH686_00820 0.87 +0.3
161,972 + OH686_00820 0.87 -0.0
161,972 + OH686_00820 0.87 -0.6
161,973 - OH686_00820 0.87 -0.4
161,973 - OH686_00820 0.87 +0.7
161,973 - OH686_00820 0.87 -0.6
161,973 - OH686_00820 0.87 +0.7
162,095 + -0.9
162,096 - +1.0
162,162 + -1.0
162,162 + -1.6
162,162 + -0.0
162,162 + +0.3
162,162 + +0.0
162,162 + +0.3
162,162 + -0.1
162,163 - -0.3
162,163 - -0.4
162,163 - -0.1
162,240 + -0.2
162,259 - -0.9
162,259 - +0.3
162,259 - +0.1
162,259 - -0.3
162,259 - -0.4
162,259 - -0.8
162,259 - -0.8
162,259 - -0.7
162,259 - +0.9
162,259 - +0.3
162,259 - -0.9
162,259 - -0.9
162,259 - -0.6
162,259 - -0.0
162,369 + OH686_00825 0.10 -0.6
162,369 + OH686_00825 0.10 +0.3
162,369 + OH686_00825 0.10 -0.6
162,370 - OH686_00825 0.10 -0.2
162,370 - OH686_00825 0.10 -1.3
162,370 - OH686_00825 0.10 +0.1
162,370 - OH686_00825 0.10 -0.1
162,370 - OH686_00825 0.10 -0.6
162,370 - OH686_00825 0.10 -0.4
162,370 - OH686_00825 0.10 -0.2
162,370 - OH686_00825 0.10 -0.5
162,448 - OH686_00825 0.17 +0.7
162,502 - OH686_00825 0.21 +1.4
162,588 + OH686_00825 0.28 +0.2
162,588 + OH686_00825 0.28 -2.0
162,588 + OH686_00825 0.28 -0.7
162,588 + OH686_00825 0.28 +0.1
162,588 + OH686_00825 0.28 +1.5
162,588 + OH686_00825 0.28 +0.2
162,589 - OH686_00825 0.28 -0.9
162,589 - OH686_00825 0.28 +0.2
162,589 - OH686_00825 0.28 +0.4
162,654 + OH686_00825 0.33 +0.4
162,654 + OH686_00825 0.33 -0.7
162,654 + OH686_00825 0.33 -1.1
162,655 - OH686_00825 0.33 +0.0
162,655 - OH686_00825 0.33 +0.2
162,655 - OH686_00825 0.33 -0.2
162,655 - OH686_00825 0.33 -0.3
162,655 - OH686_00825 0.33 +0.4
162,655 - OH686_00825 0.33 +0.8
162,761 + OH686_00825 0.42 -0.2
162,762 - OH686_00825 0.42 -0.3
162,762 - OH686_00825 0.42 -0.7
162,762 - OH686_00825 0.42 -0.3
162,762 - OH686_00825 0.42 +0.0
162,762 - OH686_00825 0.42 -1.5
162,796 - OH686_00825 0.44 -0.1
162,796 - OH686_00825 0.44 -0.1
162,816 + OH686_00825 0.46 +0.7
162,816 + OH686_00825 0.46 +0.1
162,816 + OH686_00825 0.46 -0.4
162,816 + OH686_00825 0.46 +0.1
162,816 + OH686_00825 0.46 -1.1
162,816 + OH686_00825 0.46 +0.0
162,817 - OH686_00825 0.46 -0.3
162,817 - OH686_00825 0.46 +0.0
162,817 - OH686_00825 0.46 -0.5
162,852 + OH686_00825 0.49 +0.1
162,852 + OH686_00825 0.49 -0.7
162,852 + OH686_00825 0.49 -0.3
162,852 + OH686_00825 0.49 -0.0
162,853 - OH686_00825 0.49 +0.7
162,853 - OH686_00825 0.49 +0.3
162,853 - OH686_00825 0.49 -1.5
163,152 + OH686_00825 0.73 +0.1
163,152 + OH686_00825 0.73 +0.1
163,153 - OH686_00825 0.73 -0.2
163,153 - OH686_00825 0.73 +0.1
163,153 - OH686_00825 0.73 -0.9
163,300 - OH686_00825 0.84 +0.9
163,377 + +1.4
163,378 - +0.9
163,378 - -0.3
163,378 - -0.3
163,378 - +0.3
163,444 + +1.0
163,445 - +0.4
163,567 + -0.2
163,567 + -0.9
163,567 + +0.3
163,568 - +0.5
163,568 - -0.3
163,568 - -0.2
163,568 - +0.3
163,568 - -0.3
163,568 - +0.0
163,568 - +0.2
163,568 - +0.4
163,568 - -0.2
163,568 - +0.1
163,568 - +0.0
163,580 - +0.4
163,588 + -0.4
163,588 + -0.5
163,588 + -1.1
163,588 + -0.7
163,588 + -0.2
163,588 + -0.6
163,588 + -0.2
163,588 + -1.3
163,588 + -1.4
163,589 - +0.3
163,589 - -0.4
163,589 - -1.0
163,589 - -0.8
163,658 - +0.9
163,778 + -0.4
163,797 - +0.2
163,797 - +0.8
163,797 - -0.2
163,832 + -0.1
163,832 + -0.4
163,832 + -0.0
163,832 + +0.1
163,832 + +0.2
163,832 + +0.2
163,833 - +0.2
163,833 - -0.1
164,041 + OH686_00830 0.17 +0.4
164,041 + OH686_00830 0.17 -1.2
164,041 + OH686_00830 0.17 -0.3
164,041 + OH686_00830 0.17 -1.1
164,041 + OH686_00830 0.17 -0.2
164,041 + OH686_00830 0.17 -0.3
164,042 - OH686_00830 0.17 +0.1
164,042 - OH686_00830 0.17 -0.2
164,249 - OH686_00830 0.32 -0.1
164,255 + OH686_00830 0.32 -0.3
164,256 - OH686_00830 0.32 -0.1
164,256 - OH686_00830 0.32 -0.5
164,258 + OH686_00830 0.33 +0.7
164,258 + OH686_00830 0.33 -0.7
164,258 + OH686_00830 0.33 -0.0
164,258 + OH686_00830 0.33 -0.1
164,258 + OH686_00830 0.33 +0.3
164,258 + OH686_00830 0.33 +0.2
164,258 + OH686_00830 0.33 -0.6
164,259 - OH686_00830 0.33 +0.4
164,259 - OH686_00830 0.33 -0.1
164,259 - OH686_00830 0.33 -0.0
164,259 - OH686_00830 0.33 -1.2
164,259 - OH686_00830 0.33 -0.1
164,259 - OH686_00830 0.33 -1.0
164,344 + OH686_00830 0.39 +0.1
164,344 + OH686_00830 0.39 -1.8
164,345 - OH686_00830 0.39 +0.2
164,345 - OH686_00830 0.39 +0.5
164,345 - OH686_00830 0.39 -1.5

Or see this region's nucleotide sequence