Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4683

Experiment: m.b. Thallium(I) acetate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4681 and Echvi_4682 are separated by 15 nucleotidesEchvi_4682 and Echvi_4683 are separated by 492 nucleotidesEchvi_4683 and Echvi_4684 overlap by 4 nucleotides Echvi_4681: Echvi_4681 - Thioredoxin reductase, at 5,602,755 to 5,603,759 _4681 Echvi_4682: Echvi_4682 - Ferredoxin, at 5,603,775 to 5,604,095 _4682 Echvi_4683: Echvi_4683 - Methylmalonyl-CoA mutase, N-terminal domain/subunit, at 5,604,588 to 5,606,645 _4683 Echvi_4684: Echvi_4684 - Methylmalonyl-CoA mutase, N-terminal domain/subunit, at 5,606,642 to 5,607,868 _4684 Position (kb) 5604 5605 5606 5607Strain fitness (log2 ratio) -2 -1 0 1 2at 5604.094 kb on - strandat 5604.111 kb on - strandat 5604.115 kb on - strandat 5604.149 kb on - strandat 5604.231 kb on - strandat 5604.258 kb on + strandat 5604.259 kb on - strandat 5604.386 kb on + strandat 5604.447 kb on - strandat 5604.447 kb on - strandat 5604.454 kb on - strandat 5604.461 kb on - strandat 5604.481 kb on + strandat 5604.481 kb on + strandat 5604.481 kb on + strandat 5604.482 kb on - strandat 5604.482 kb on - strandat 5604.490 kb on + strandat 5604.490 kb on + strandat 5604.490 kb on + strandat 5604.490 kb on + strandat 5604.490 kb on + strandat 5604.491 kb on - strandat 5604.491 kb on - strandat 5604.500 kb on + strandat 5604.549 kb on + strandat 5604.550 kb on - strandat 5604.550 kb on - strandat 5604.553 kb on + strandat 5604.560 kb on + strandat 5604.560 kb on + strandat 5604.561 kb on - strandat 5604.561 kb on - strandat 5604.589 kb on + strandat 5604.597 kb on + strandat 5604.678 kb on + strandat 5604.679 kb on - strandat 5604.729 kb on - strandat 5604.757 kb on - strandat 5604.757 kb on - strandat 5604.757 kb on - strandat 5604.777 kb on + strandat 5604.778 kb on - strandat 5605.009 kb on - strand, within Echvi_4683at 5605.058 kb on - strand, within Echvi_4683at 5605.058 kb on - strand, within Echvi_4683at 5605.100 kb on - strand, within Echvi_4683at 5605.112 kb on + strand, within Echvi_4683at 5605.122 kb on + strand, within Echvi_4683at 5605.123 kb on - strand, within Echvi_4683at 5605.131 kb on + strand, within Echvi_4683at 5605.136 kb on + strand, within Echvi_4683at 5605.136 kb on + strand, within Echvi_4683at 5605.137 kb on - strand, within Echvi_4683at 5605.137 kb on - strand, within Echvi_4683at 5605.158 kb on + strand, within Echvi_4683at 5605.339 kb on - strand, within Echvi_4683at 5605.362 kb on + strand, within Echvi_4683at 5605.362 kb on + strand, within Echvi_4683at 5605.413 kb on + strand, within Echvi_4683at 5605.571 kb on - strand, within Echvi_4683at 5605.658 kb on + strand, within Echvi_4683at 5605.724 kb on + strand, within Echvi_4683at 5605.954 kb on + strand, within Echvi_4683at 5605.954 kb on + strand, within Echvi_4683at 5605.977 kb on - strand, within Echvi_4683at 5606.018 kb on + strand, within Echvi_4683at 5606.018 kb on + strand, within Echvi_4683at 5606.019 kb on - strand, within Echvi_4683at 5606.019 kb on - strand, within Echvi_4683at 5606.117 kb on - strand, within Echvi_4683at 5606.120 kb on + strand, within Echvi_4683at 5606.120 kb on + strand, within Echvi_4683at 5606.120 kb on + strand, within Echvi_4683at 5606.121 kb on - strand, within Echvi_4683at 5606.122 kb on + strand, within Echvi_4683at 5606.122 kb on + strand, within Echvi_4683at 5606.122 kb on + strand, within Echvi_4683at 5606.122 kb on + strand, within Echvi_4683at 5606.122 kb on + strand, within Echvi_4683at 5606.123 kb on - strand, within Echvi_4683at 5606.123 kb on - strand, within Echvi_4683at 5606.123 kb on - strand, within Echvi_4683at 5606.123 kb on - strand, within Echvi_4683at 5606.123 kb on - strand, within Echvi_4683at 5606.126 kb on + strand, within Echvi_4683at 5606.216 kb on + strand, within Echvi_4683at 5606.216 kb on + strand, within Echvi_4683at 5606.218 kb on + strand, within Echvi_4683at 5606.218 kb on + strand, within Echvi_4683at 5606.218 kb on + strand, within Echvi_4683at 5606.219 kb on - strand, within Echvi_4683at 5606.485 kb on + strandat 5606.485 kb on + strandat 5606.515 kb on + strandat 5606.516 kb on - strandat 5606.516 kb on - strandat 5606.523 kb on - strandat 5606.528 kb on - strandat 5606.528 kb on - strandat 5606.645 kb on + strandat 5606.645 kb on + strandat 5606.769 kb on + strand, within Echvi_4684at 5606.769 kb on + strand, within Echvi_4684at 5606.818 kb on - strand, within Echvi_4684at 5606.818 kb on - strand, within Echvi_4684at 5606.861 kb on + strand, within Echvi_4684at 5606.862 kb on - strand, within Echvi_4684at 5606.862 kb on - strand, within Echvi_4684at 5606.881 kb on + strand, within Echvi_4684at 5606.882 kb on - strand, within Echvi_4684at 5606.898 kb on - strand, within Echvi_4684at 5606.902 kb on + strand, within Echvi_4684at 5606.902 kb on + strand, within Echvi_4684at 5606.902 kb on + strand, within Echvi_4684at 5606.903 kb on - strand, within Echvi_4684at 5606.903 kb on - strand, within Echvi_4684at 5606.908 kb on + strand, within Echvi_4684at 5606.942 kb on - strand, within Echvi_4684at 5606.949 kb on - strand, within Echvi_4684at 5606.953 kb on + strand, within Echvi_4684at 5606.960 kb on - strand, within Echvi_4684at 5606.961 kb on + strand, within Echvi_4684at 5606.961 kb on + strand, within Echvi_4684at 5606.962 kb on - strand, within Echvi_4684at 5606.962 kb on - strand, within Echvi_4684at 5607.049 kb on - strand, within Echvi_4684at 5607.165 kb on + strand, within Echvi_4684at 5607.185 kb on + strand, within Echvi_4684at 5607.200 kb on + strand, within Echvi_4684at 5607.224 kb on - strand, within Echvi_4684at 5607.241 kb on + strand, within Echvi_4684at 5607.279 kb on - strand, within Echvi_4684at 5607.564 kb on - strand, within Echvi_4684at 5607.587 kb on + strand, within Echvi_4684

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.05 mg/ml
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5,604,094 - -0.3
5,604,111 - -0.2
5,604,115 - +0.0
5,604,149 - -0.3
5,604,231 - +0.1
5,604,258 + -1.8
5,604,259 - -0.4
5,604,386 + +0.7
5,604,447 - +0.5
5,604,447 - -0.7
5,604,454 - +1.0
5,604,461 - +2.4
5,604,481 + +0.9
5,604,481 + +0.7
5,604,481 + +0.5
5,604,482 - +0.6
5,604,482 - -0.5
5,604,490 + +0.1
5,604,490 + +0.1
5,604,490 + -0.2
5,604,490 + +0.5
5,604,490 + +0.1
5,604,491 - -0.9
5,604,491 - +0.8
5,604,500 + +0.7
5,604,549 + +0.6
5,604,550 - -1.0
5,604,550 - +1.0
5,604,553 + +0.3
5,604,560 + +0.7
5,604,560 + +0.1
5,604,561 - +0.5
5,604,561 - -1.0
5,604,589 + -0.3
5,604,597 + +0.4
5,604,678 + +0.7
5,604,679 - -2.1
5,604,729 - +1.4
5,604,757 - -2.0
5,604,757 - +1.5
5,604,757 - +2.4
5,604,777 + -1.0
5,604,778 - -0.3
5,605,009 - Echvi_4683 0.20 +0.2
5,605,058 - Echvi_4683 0.23 +0.0
5,605,058 - Echvi_4683 0.23 -1.0
5,605,100 - Echvi_4683 0.25 +0.0
5,605,112 + Echvi_4683 0.25 +0.7
5,605,122 + Echvi_4683 0.26 +0.1
5,605,123 - Echvi_4683 0.26 +0.7
5,605,131 + Echvi_4683 0.26 -1.4
5,605,136 + Echvi_4683 0.27 -0.2
5,605,136 + Echvi_4683 0.27 +2.0
5,605,137 - Echvi_4683 0.27 -0.8
5,605,137 - Echvi_4683 0.27 -0.5
5,605,158 + Echvi_4683 0.28 -0.9
5,605,339 - Echvi_4683 0.36 +0.6
5,605,362 + Echvi_4683 0.38 +1.3
5,605,362 + Echvi_4683 0.38 +1.0
5,605,413 + Echvi_4683 0.40 -0.5
5,605,571 - Echvi_4683 0.48 +0.6
5,605,658 + Echvi_4683 0.52 -0.6
5,605,724 + Echvi_4683 0.55 +0.3
5,605,954 + Echvi_4683 0.66 +1.4
5,605,954 + Echvi_4683 0.66 +0.2
5,605,977 - Echvi_4683 0.67 +0.8
5,606,018 + Echvi_4683 0.69 +0.4
5,606,018 + Echvi_4683 0.69 -0.2
5,606,019 - Echvi_4683 0.70 -1.4
5,606,019 - Echvi_4683 0.70 +1.0
5,606,117 - Echvi_4683 0.74 +0.7
5,606,120 + Echvi_4683 0.74 -0.1
5,606,120 + Echvi_4683 0.74 +0.7
5,606,120 + Echvi_4683 0.74 +0.9
5,606,121 - Echvi_4683 0.74 +0.0
5,606,122 + Echvi_4683 0.75 -0.9
5,606,122 + Echvi_4683 0.75 -0.1
5,606,122 + Echvi_4683 0.75 +1.2
5,606,122 + Echvi_4683 0.75 +1.0
5,606,122 + Echvi_4683 0.75 +0.2
5,606,123 - Echvi_4683 0.75 -1.7
5,606,123 - Echvi_4683 0.75 +0.3
5,606,123 - Echvi_4683 0.75 +0.5
5,606,123 - Echvi_4683 0.75 -1.3
5,606,123 - Echvi_4683 0.75 +1.8
5,606,126 + Echvi_4683 0.75 +0.2
5,606,216 + Echvi_4683 0.79 +0.3
5,606,216 + Echvi_4683 0.79 -1.0
5,606,218 + Echvi_4683 0.79 -0.4
5,606,218 + Echvi_4683 0.79 +1.2
5,606,218 + Echvi_4683 0.79 +1.8
5,606,219 - Echvi_4683 0.79 -0.5
5,606,485 + +0.7
5,606,485 + +0.2
5,606,515 + +0.5
5,606,516 - +0.8
5,606,516 - -0.2
5,606,523 - -1.3
5,606,528 - -2.1
5,606,528 - +1.9
5,606,645 + -0.5
5,606,645 + +0.4
5,606,769 + Echvi_4684 0.10 +0.4
5,606,769 + Echvi_4684 0.10 -0.4
5,606,818 - Echvi_4684 0.14 +0.2
5,606,818 - Echvi_4684 0.14 +0.9
5,606,861 + Echvi_4684 0.18 +2.3
5,606,862 - Echvi_4684 0.18 +0.2
5,606,862 - Echvi_4684 0.18 +0.9
5,606,881 + Echvi_4684 0.19 -1.5
5,606,882 - Echvi_4684 0.20 +1.6
5,606,898 - Echvi_4684 0.21 -0.5
5,606,902 + Echvi_4684 0.21 +0.8
5,606,902 + Echvi_4684 0.21 +0.5
5,606,902 + Echvi_4684 0.21 -0.7
5,606,903 - Echvi_4684 0.21 -0.2
5,606,903 - Echvi_4684 0.21 +0.0
5,606,908 + Echvi_4684 0.22 +0.4
5,606,942 - Echvi_4684 0.24 +0.6
5,606,949 - Echvi_4684 0.25 +1.1
5,606,953 + Echvi_4684 0.25 -0.1
5,606,960 - Echvi_4684 0.26 +0.1
5,606,961 + Echvi_4684 0.26 -0.5
5,606,961 + Echvi_4684 0.26 +0.2
5,606,962 - Echvi_4684 0.26 -0.5
5,606,962 - Echvi_4684 0.26 +0.4
5,607,049 - Echvi_4684 0.33 -0.7
5,607,165 + Echvi_4684 0.43 +1.1
5,607,185 + Echvi_4684 0.44 -0.0
5,607,200 + Echvi_4684 0.45 +0.3
5,607,224 - Echvi_4684 0.47 -1.6
5,607,241 + Echvi_4684 0.49 -0.8
5,607,279 - Echvi_4684 0.52 +0.2
5,607,564 - Echvi_4684 0.75 -2.0
5,607,587 + Echvi_4684 0.77 +1.3

Or see this region's nucleotide sequence