Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4529

Experiment: m.b. Thallium(I) acetate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4528 and Echvi_4529 are separated by 141 nucleotidesEchvi_4529 and Echvi_4530 are separated by 123 nucleotides Echvi_4528: Echvi_4528 - Beta-glucanase/Beta-glucan synthetase, at 5,412,159 to 5,413,052 _4528 Echvi_4529: Echvi_4529 - Metal-dependent hydrolase, at 5,413,194 to 5,414,069 _4529 Echvi_4530: Echvi_4530 - hypothetical protein, at 5,414,193 to 5,415,620 _4530 Position (kb) 5413 5414 5415Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5412.282 kb on + strand, within Echvi_4528at 5412.282 kb on + strand, within Echvi_4528at 5412.283 kb on - strand, within Echvi_4528at 5412.311 kb on + strand, within Echvi_4528at 5412.311 kb on + strand, within Echvi_4528at 5412.328 kb on + strand, within Echvi_4528at 5412.328 kb on + strand, within Echvi_4528at 5412.369 kb on - strandat 5412.447 kb on + strand, within Echvi_4528at 5412.447 kb on + strand, within Echvi_4528at 5412.447 kb on + strand, within Echvi_4528at 5412.461 kb on - strand, within Echvi_4528at 5412.461 kb on - strand, within Echvi_4528at 5412.505 kb on + strand, within Echvi_4528at 5412.505 kb on + strand, within Echvi_4528at 5412.506 kb on - strand, within Echvi_4528at 5412.506 kb on - strand, within Echvi_4528at 5412.509 kb on - strand, within Echvi_4528at 5412.514 kb on - strand, within Echvi_4528at 5412.522 kb on + strand, within Echvi_4528at 5412.594 kb on + strand, within Echvi_4528at 5412.594 kb on + strand, within Echvi_4528at 5412.594 kb on + strand, within Echvi_4528at 5412.594 kb on + strand, within Echvi_4528at 5412.594 kb on + strand, within Echvi_4528at 5412.594 kb on + strand, within Echvi_4528at 5412.594 kb on + strand, within Echvi_4528at 5412.594 kb on + strandat 5412.595 kb on - strand, within Echvi_4528at 5412.595 kb on - strand, within Echvi_4528at 5412.595 kb on - strand, within Echvi_4528at 5412.595 kb on - strand, within Echvi_4528at 5412.595 kb on - strand, within Echvi_4528at 5412.596 kb on + strandat 5412.596 kb on + strand, within Echvi_4528at 5412.596 kb on + strand, within Echvi_4528at 5412.597 kb on - strand, within Echvi_4528at 5412.597 kb on - strand, within Echvi_4528at 5412.597 kb on - strand, within Echvi_4528at 5412.598 kb on + strand, within Echvi_4528at 5412.599 kb on - strand, within Echvi_4528at 5412.599 kb on - strand, within Echvi_4528at 5412.599 kb on - strand, within Echvi_4528at 5412.602 kb on + strand, within Echvi_4528at 5412.603 kb on - strand, within Echvi_4528at 5412.603 kb on - strand, within Echvi_4528at 5412.603 kb on - strand, within Echvi_4528at 5412.675 kb on + strand, within Echvi_4528at 5412.676 kb on - strand, within Echvi_4528at 5412.796 kb on - strand, within Echvi_4528at 5412.869 kb on - strand, within Echvi_4528at 5413.023 kb on + strandat 5413.024 kb on - strandat 5413.024 kb on - strandat 5413.054 kb on + strandat 5413.054 kb on + strandat 5413.066 kb on + strandat 5413.067 kb on - strandat 5413.067 kb on - strandat 5413.113 kb on + strandat 5413.114 kb on - strandat 5413.114 kb on - strandat 5413.146 kb on + strandat 5413.154 kb on + strandat 5413.155 kb on - strandat 5413.195 kb on + strandat 5413.241 kb on + strandat 5413.241 kb on + strandat 5413.252 kb on + strandat 5413.252 kb on + strandat 5413.253 kb on - strandat 5413.253 kb on - strandat 5413.274 kb on - strandat 5413.305 kb on + strand, within Echvi_4529at 5413.305 kb on + strand, within Echvi_4529at 5413.306 kb on - strand, within Echvi_4529at 5413.306 kb on - strand, within Echvi_4529at 5413.310 kb on - strand, within Echvi_4529at 5413.326 kb on - strand, within Echvi_4529at 5413.446 kb on - strand, within Echvi_4529at 5413.622 kb on + strand, within Echvi_4529at 5413.622 kb on + strand, within Echvi_4529at 5413.622 kb on + strand, within Echvi_4529at 5413.622 kb on + strand, within Echvi_4529at 5413.622 kb on + strand, within Echvi_4529at 5413.622 kb on + strand, within Echvi_4529at 5413.622 kb on + strand, within Echvi_4529at 5413.623 kb on - strand, within Echvi_4529at 5413.623 kb on - strand, within Echvi_4529at 5413.623 kb on - strand, within Echvi_4529at 5413.623 kb on - strand, within Echvi_4529at 5413.623 kb on - strand, within Echvi_4529at 5413.623 kb on - strand, within Echvi_4529at 5413.697 kb on + strand, within Echvi_4529at 5413.698 kb on - strand, within Echvi_4529at 5413.778 kb on - strand, within Echvi_4529at 5413.838 kb on + strand, within Echvi_4529at 5413.843 kb on - strand, within Echvi_4529at 5413.935 kb on - strand, within Echvi_4529at 5413.948 kb on + strand, within Echvi_4529at 5413.997 kb on + strandat 5414.003 kb on + strandat 5414.003 kb on + strandat 5414.003 kb on + strandat 5414.015 kb on + strandat 5414.049 kb on - strandat 5414.061 kb on + strandat 5414.102 kb on + strandat 5414.102 kb on + strandat 5414.102 kb on + strandat 5414.124 kb on - strandat 5414.158 kb on - strandat 5414.161 kb on + strandat 5414.161 kb on + strandat 5414.161 kb on + strandat 5414.162 kb on - strandat 5414.162 kb on - strandat 5414.226 kb on - strandat 5414.259 kb on - strandat 5414.259 kb on - strandat 5414.297 kb on - strandat 5414.405 kb on - strand, within Echvi_4530at 5414.413 kb on - strand, within Echvi_4530at 5414.413 kb on - strand, within Echvi_4530at 5414.416 kb on + strand, within Echvi_4530at 5414.416 kb on + strand, within Echvi_4530at 5414.417 kb on - strand, within Echvi_4530at 5414.420 kb on + strand, within Echvi_4530at 5414.537 kb on - strand, within Echvi_4530at 5414.563 kb on + strand, within Echvi_4530at 5414.564 kb on - strand, within Echvi_4530at 5414.657 kb on + strand, within Echvi_4530at 5414.657 kb on + strand, within Echvi_4530at 5414.657 kb on + strand, within Echvi_4530at 5414.658 kb on - strand, within Echvi_4530at 5414.659 kb on + strand, within Echvi_4530at 5414.659 kb on + strand, within Echvi_4530at 5414.660 kb on - strand, within Echvi_4530at 5414.660 kb on - strand, within Echvi_4530at 5414.726 kb on + strand, within Echvi_4530at 5414.726 kb on + strand, within Echvi_4530at 5414.756 kb on - strand, within Echvi_4530at 5414.756 kb on - strand, within Echvi_4530at 5414.793 kb on - strand, within Echvi_4530at 5414.793 kb on - strand, within Echvi_4530at 5414.793 kb on - strand, within Echvi_4530at 5414.868 kb on - strand, within Echvi_4530at 5414.946 kb on + strand, within Echvi_4530at 5414.947 kb on - strand, within Echvi_4530at 5414.947 kb on - strand, within Echvi_4530at 5414.947 kb on - strand, within Echvi_4530at 5415.056 kb on + strand, within Echvi_4530at 5415.057 kb on - strand, within Echvi_4530at 5415.057 kb on - strand, within Echvi_4530at 5415.057 kb on - strand, within Echvi_4530at 5415.067 kb on + strand, within Echvi_4530at 5415.067 kb on + strand, within Echvi_4530at 5415.067 kb on + strand, within Echvi_4530at 5415.068 kb on - strand, within Echvi_4530at 5415.068 kb on - strand, within Echvi_4530

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.05 mg/ml
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5,412,282 + Echvi_4528 0.14 -0.2
5,412,282 + Echvi_4528 0.14 -0.3
5,412,283 - Echvi_4528 0.14 +0.0
5,412,311 + Echvi_4528 0.17 -0.5
5,412,311 + Echvi_4528 0.17 -0.8
5,412,328 + Echvi_4528 0.19 -0.4
5,412,328 + Echvi_4528 0.19 +0.8
5,412,369 - +0.1
5,412,447 + Echvi_4528 0.32 -1.0
5,412,447 + Echvi_4528 0.32 +1.0
5,412,447 + Echvi_4528 0.32 -3.5
5,412,461 - Echvi_4528 0.34 +0.6
5,412,461 - Echvi_4528 0.34 +0.1
5,412,505 + Echvi_4528 0.39 -0.4
5,412,505 + Echvi_4528 0.39 +0.1
5,412,506 - Echvi_4528 0.39 -0.8
5,412,506 - Echvi_4528 0.39 -1.3
5,412,509 - Echvi_4528 0.39 +0.6
5,412,514 - Echvi_4528 0.40 +0.5
5,412,522 + Echvi_4528 0.41 +0.0
5,412,594 + Echvi_4528 0.49 +0.3
5,412,594 + Echvi_4528 0.49 +2.0
5,412,594 + Echvi_4528 0.49 +0.8
5,412,594 + Echvi_4528 0.49 -0.2
5,412,594 + Echvi_4528 0.49 +0.6
5,412,594 + Echvi_4528 0.49 +0.0
5,412,594 + Echvi_4528 0.49 -0.5
5,412,594 + +0.1
5,412,595 - Echvi_4528 0.49 -0.3
5,412,595 - Echvi_4528 0.49 -0.7
5,412,595 - Echvi_4528 0.49 +0.6
5,412,595 - Echvi_4528 0.49 +2.2
5,412,595 - Echvi_4528 0.49 +0.3
5,412,596 + +0.1
5,412,596 + Echvi_4528 0.49 +0.5
5,412,596 + Echvi_4528 0.49 +0.2
5,412,597 - Echvi_4528 0.49 +0.1
5,412,597 - Echvi_4528 0.49 -0.7
5,412,597 - Echvi_4528 0.49 +0.2
5,412,598 + Echvi_4528 0.49 +0.2
5,412,599 - Echvi_4528 0.49 -0.9
5,412,599 - Echvi_4528 0.49 -0.5
5,412,599 - Echvi_4528 0.49 -0.5
5,412,602 + Echvi_4528 0.50 +0.4
5,412,603 - Echvi_4528 0.50 +0.1
5,412,603 - Echvi_4528 0.50 -0.1
5,412,603 - Echvi_4528 0.50 +0.7
5,412,675 + Echvi_4528 0.58 -1.2
5,412,676 - Echvi_4528 0.58 -1.3
5,412,796 - Echvi_4528 0.71 +1.4
5,412,869 - Echvi_4528 0.79 -0.8
5,413,023 + -1.7
5,413,024 - -2.0
5,413,024 - +1.8
5,413,054 + +0.6
5,413,054 + +0.2
5,413,066 + -0.2
5,413,067 - +0.6
5,413,067 - +0.5
5,413,113 + -1.3
5,413,114 - -0.2
5,413,114 - -1.7
5,413,146 + +0.7
5,413,154 + +0.0
5,413,155 - -0.5
5,413,195 + -0.3
5,413,241 + -0.0
5,413,241 + -0.7
5,413,252 + -0.1
5,413,252 + +0.4
5,413,253 - +1.2
5,413,253 - +0.5
5,413,274 - +0.3
5,413,305 + Echvi_4529 0.13 -0.9
5,413,305 + Echvi_4529 0.13 -0.4
5,413,306 - Echvi_4529 0.13 -0.6
5,413,306 - Echvi_4529 0.13 +0.4
5,413,310 - Echvi_4529 0.13 -0.1
5,413,326 - Echvi_4529 0.15 -0.7
5,413,446 - Echvi_4529 0.29 -0.3
5,413,622 + Echvi_4529 0.49 -1.5
5,413,622 + Echvi_4529 0.49 +0.2
5,413,622 + Echvi_4529 0.49 -0.2
5,413,622 + Echvi_4529 0.49 -0.2
5,413,622 + Echvi_4529 0.49 -0.3
5,413,622 + Echvi_4529 0.49 -0.0
5,413,622 + Echvi_4529 0.49 -0.2
5,413,623 - Echvi_4529 0.49 -2.1
5,413,623 - Echvi_4529 0.49 -0.9
5,413,623 - Echvi_4529 0.49 -0.5
5,413,623 - Echvi_4529 0.49 +0.5
5,413,623 - Echvi_4529 0.49 -0.3
5,413,623 - Echvi_4529 0.49 -1.3
5,413,697 + Echvi_4529 0.57 -2.1
5,413,698 - Echvi_4529 0.58 -1.3
5,413,778 - Echvi_4529 0.67 +0.0
5,413,838 + Echvi_4529 0.74 +1.7
5,413,843 - Echvi_4529 0.74 -0.9
5,413,935 - Echvi_4529 0.85 -0.5
5,413,948 + Echvi_4529 0.86 -0.8
5,413,997 + +1.6
5,414,003 + -0.1
5,414,003 + -0.6
5,414,003 + -0.2
5,414,015 + +0.8
5,414,049 - +1.9
5,414,061 + +0.5
5,414,102 + +0.6
5,414,102 + -0.3
5,414,102 + +0.3
5,414,124 - -0.2
5,414,158 - -1.1
5,414,161 + -0.9
5,414,161 + -2.8
5,414,161 + +0.1
5,414,162 - -0.4
5,414,162 - +0.5
5,414,226 - +0.6
5,414,259 - -1.2
5,414,259 - -2.1
5,414,297 - -1.1
5,414,405 - Echvi_4530 0.15 -1.0
5,414,413 - Echvi_4530 0.15 +0.1
5,414,413 - Echvi_4530 0.15 -1.1
5,414,416 + Echvi_4530 0.16 -0.5
5,414,416 + Echvi_4530 0.16 +0.5
5,414,417 - Echvi_4530 0.16 +1.6
5,414,420 + Echvi_4530 0.16 +1.7
5,414,537 - Echvi_4530 0.24 -1.0
5,414,563 + Echvi_4530 0.26 -0.5
5,414,564 - Echvi_4530 0.26 +0.6
5,414,657 + Echvi_4530 0.32 +0.3
5,414,657 + Echvi_4530 0.32 -1.3
5,414,657 + Echvi_4530 0.32 -1.0
5,414,658 - Echvi_4530 0.33 +0.5
5,414,659 + Echvi_4530 0.33 -0.4
5,414,659 + Echvi_4530 0.33 +0.2
5,414,660 - Echvi_4530 0.33 +0.3
5,414,660 - Echvi_4530 0.33 -0.6
5,414,726 + Echvi_4530 0.37 +0.3
5,414,726 + Echvi_4530 0.37 +1.4
5,414,756 - Echvi_4530 0.39 +0.0
5,414,756 - Echvi_4530 0.39 -0.2
5,414,793 - Echvi_4530 0.42 -1.1
5,414,793 - Echvi_4530 0.42 +0.6
5,414,793 - Echvi_4530 0.42 +1.2
5,414,868 - Echvi_4530 0.47 -0.1
5,414,946 + Echvi_4530 0.53 +0.4
5,414,947 - Echvi_4530 0.53 +0.2
5,414,947 - Echvi_4530 0.53 +0.7
5,414,947 - Echvi_4530 0.53 +0.3
5,415,056 + Echvi_4530 0.60 -1.8
5,415,057 - Echvi_4530 0.61 -0.9
5,415,057 - Echvi_4530 0.61 -0.1
5,415,057 - Echvi_4530 0.61 +0.8
5,415,067 + Echvi_4530 0.61 -2.1
5,415,067 + Echvi_4530 0.61 -2.4
5,415,067 + Echvi_4530 0.61 -0.3
5,415,068 - Echvi_4530 0.61 -0.1
5,415,068 - Echvi_4530 0.61 -1.1

Or see this region's nucleotide sequence