Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4509

Experiment: m.b. Thallium(I) acetate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4508 and Echvi_4509 are separated by 1 nucleotidesEchvi_4509 and Echvi_4510 are separated by 12 nucleotides Echvi_4508: Echvi_4508 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 5,383,912 to 5,384,931 _4508 Echvi_4509: Echvi_4509 - Zn-dependent hydrolases, including glyoxylases, at 5,384,933 to 5,385,763 _4509 Echvi_4510: Echvi_4510 - Cystathionine beta-lyases/cystathionine gamma-synthases, at 5,385,776 to 5,386,987 _4510 Position (kb) 5384 5385 5386Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5383.993 kb on - strandat 5383.994 kb on + strandat 5383.995 kb on - strandat 5383.995 kb on - strandat 5384.008 kb on + strandat 5384.009 kb on - strandat 5384.075 kb on - strand, within Echvi_4508at 5384.075 kb on - strand, within Echvi_4508at 5384.076 kb on + strand, within Echvi_4508at 5384.077 kb on - strand, within Echvi_4508at 5384.186 kb on + strand, within Echvi_4508at 5384.186 kb on + strand, within Echvi_4508at 5384.187 kb on - strand, within Echvi_4508at 5384.187 kb on - strand, within Echvi_4508at 5384.187 kb on - strand, within Echvi_4508at 5384.187 kb on - strand, within Echvi_4508at 5384.275 kb on - strand, within Echvi_4508at 5384.299 kb on - strand, within Echvi_4508at 5384.374 kb on - strand, within Echvi_4508at 5384.382 kb on + strand, within Echvi_4508at 5384.393 kb on - strand, within Echvi_4508at 5384.464 kb on + strand, within Echvi_4508at 5384.465 kb on - strand, within Echvi_4508at 5384.509 kb on + strand, within Echvi_4508at 5384.527 kb on + strand, within Echvi_4508at 5384.528 kb on - strand, within Echvi_4508at 5384.542 kb on + strand, within Echvi_4508at 5384.542 kb on + strand, within Echvi_4508at 5384.584 kb on + strand, within Echvi_4508at 5384.585 kb on - strand, within Echvi_4508at 5384.681 kb on - strand, within Echvi_4508at 5384.681 kb on - strand, within Echvi_4508at 5384.759 kb on + strand, within Echvi_4508at 5384.844 kb on - strandat 5384.929 kb on + strandat 5384.941 kb on + strandat 5384.942 kb on - strandat 5384.952 kb on + strandat 5384.953 kb on - strandat 5384.953 kb on - strandat 5384.958 kb on + strandat 5384.959 kb on - strandat 5385.008 kb on - strandat 5385.026 kb on + strand, within Echvi_4509at 5385.026 kb on + strand, within Echvi_4509at 5385.027 kb on - strand, within Echvi_4509at 5385.027 kb on - strand, within Echvi_4509at 5385.027 kb on - strand, within Echvi_4509at 5385.047 kb on + strand, within Echvi_4509at 5385.047 kb on + strand, within Echvi_4509at 5385.048 kb on - strand, within Echvi_4509at 5385.048 kb on - strand, within Echvi_4509at 5385.056 kb on + strand, within Echvi_4509at 5385.059 kb on + strand, within Echvi_4509at 5385.059 kb on + strand, within Echvi_4509at 5385.060 kb on - strand, within Echvi_4509at 5385.060 kb on - strand, within Echvi_4509at 5385.142 kb on + strand, within Echvi_4509at 5385.161 kb on + strand, within Echvi_4509at 5385.168 kb on + strand, within Echvi_4509at 5385.168 kb on + strand, within Echvi_4509at 5385.169 kb on - strand, within Echvi_4509at 5385.170 kb on + strand, within Echvi_4509at 5385.178 kb on + strand, within Echvi_4509at 5385.193 kb on + strand, within Echvi_4509at 5385.194 kb on - strand, within Echvi_4509at 5385.206 kb on - strand, within Echvi_4509at 5385.212 kb on + strand, within Echvi_4509at 5385.212 kb on + strand, within Echvi_4509at 5385.244 kb on + strand, within Echvi_4509at 5385.244 kb on + strand, within Echvi_4509at 5385.244 kb on + strand, within Echvi_4509at 5385.245 kb on - strand, within Echvi_4509at 5385.245 kb on - strand, within Echvi_4509at 5385.245 kb on - strand, within Echvi_4509at 5385.286 kb on - strand, within Echvi_4509at 5385.286 kb on - strand, within Echvi_4509at 5385.313 kb on + strand, within Echvi_4509at 5385.344 kb on - strand, within Echvi_4509at 5385.344 kb on - strand, within Echvi_4509at 5385.353 kb on + strand, within Echvi_4509at 5385.354 kb on - strand, within Echvi_4509at 5385.359 kb on + strand, within Echvi_4509at 5385.360 kb on - strand, within Echvi_4509at 5385.413 kb on - strand, within Echvi_4509at 5385.454 kb on - strand, within Echvi_4509at 5385.454 kb on - strand, within Echvi_4509at 5385.456 kb on - strand, within Echvi_4509at 5385.462 kb on - strand, within Echvi_4509at 5385.462 kb on - strand, within Echvi_4509at 5385.462 kb on - strand, within Echvi_4509at 5385.588 kb on + strand, within Echvi_4509at 5385.609 kb on - strand, within Echvi_4509at 5385.629 kb on - strand, within Echvi_4509at 5385.684 kb on - strandat 5385.701 kb on + strandat 5385.702 kb on - strandat 5385.719 kb on - strandat 5385.719 kb on - strandat 5385.793 kb on + strandat 5385.876 kb on + strandat 5385.953 kb on + strand, within Echvi_4510at 5385.955 kb on + strand, within Echvi_4510at 5385.956 kb on - strand, within Echvi_4510at 5386.080 kb on + strand, within Echvi_4510at 5386.101 kb on + strand, within Echvi_4510at 5386.102 kb on - strand, within Echvi_4510at 5386.228 kb on + strand, within Echvi_4510at 5386.228 kb on + strand, within Echvi_4510at 5386.228 kb on + strand, within Echvi_4510at 5386.229 kb on - strand, within Echvi_4510at 5386.229 kb on - strand, within Echvi_4510at 5386.371 kb on + strand, within Echvi_4510at 5386.371 kb on + strand, within Echvi_4510at 5386.412 kb on + strand, within Echvi_4510at 5386.498 kb on - strand, within Echvi_4510at 5386.633 kb on - strand, within Echvi_4510

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.05 mg/ml
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5,383,993 - -0.6
5,383,994 + -0.7
5,383,995 - +0.1
5,383,995 - +0.5
5,384,008 + +0.7
5,384,009 - +1.1
5,384,075 - Echvi_4508 0.16 -1.8
5,384,075 - Echvi_4508 0.16 -0.1
5,384,076 + Echvi_4508 0.16 -0.4
5,384,077 - Echvi_4508 0.16 +0.3
5,384,186 + Echvi_4508 0.27 +0.2
5,384,186 + Echvi_4508 0.27 +1.1
5,384,187 - Echvi_4508 0.27 +0.8
5,384,187 - Echvi_4508 0.27 -0.7
5,384,187 - Echvi_4508 0.27 -0.6
5,384,187 - Echvi_4508 0.27 -0.5
5,384,275 - Echvi_4508 0.36 +1.3
5,384,299 - Echvi_4508 0.38 +0.3
5,384,374 - Echvi_4508 0.45 +1.5
5,384,382 + Echvi_4508 0.46 +0.5
5,384,393 - Echvi_4508 0.47 +1.1
5,384,464 + Echvi_4508 0.54 +0.3
5,384,465 - Echvi_4508 0.54 -0.8
5,384,509 + Echvi_4508 0.59 -2.3
5,384,527 + Echvi_4508 0.60 -0.2
5,384,528 - Echvi_4508 0.60 -0.3
5,384,542 + Echvi_4508 0.62 +1.4
5,384,542 + Echvi_4508 0.62 -0.7
5,384,584 + Echvi_4508 0.66 -0.4
5,384,585 - Echvi_4508 0.66 +0.1
5,384,681 - Echvi_4508 0.75 +0.7
5,384,681 - Echvi_4508 0.75 -0.3
5,384,759 + Echvi_4508 0.83 -1.8
5,384,844 - -1.6
5,384,929 + +1.4
5,384,941 + +1.1
5,384,942 - -0.5
5,384,952 + -1.3
5,384,953 - -0.5
5,384,953 - -1.0
5,384,958 + -1.2
5,384,959 - -0.6
5,385,008 - +0.1
5,385,026 + Echvi_4509 0.11 -0.2
5,385,026 + Echvi_4509 0.11 -2.2
5,385,027 - Echvi_4509 0.11 +1.4
5,385,027 - Echvi_4509 0.11 -0.8
5,385,027 - Echvi_4509 0.11 -0.2
5,385,047 + Echvi_4509 0.14 -1.3
5,385,047 + Echvi_4509 0.14 -1.0
5,385,048 - Echvi_4509 0.14 -0.4
5,385,048 - Echvi_4509 0.14 +0.8
5,385,056 + Echvi_4509 0.15 -0.9
5,385,059 + Echvi_4509 0.15 -1.0
5,385,059 + Echvi_4509 0.15 +0.7
5,385,060 - Echvi_4509 0.15 +0.5
5,385,060 - Echvi_4509 0.15 +0.5
5,385,142 + Echvi_4509 0.25 +0.0
5,385,161 + Echvi_4509 0.27 -0.9
5,385,168 + Echvi_4509 0.28 -1.6
5,385,168 + Echvi_4509 0.28 -0.2
5,385,169 - Echvi_4509 0.28 -1.2
5,385,170 + Echvi_4509 0.29 -0.4
5,385,178 + Echvi_4509 0.29 -0.7
5,385,193 + Echvi_4509 0.31 -0.5
5,385,194 - Echvi_4509 0.31 -0.2
5,385,206 - Echvi_4509 0.33 -0.8
5,385,212 + Echvi_4509 0.34 -0.4
5,385,212 + Echvi_4509 0.34 -0.5
5,385,244 + Echvi_4509 0.37 -0.6
5,385,244 + Echvi_4509 0.37 -0.3
5,385,244 + Echvi_4509 0.37 -0.5
5,385,245 - Echvi_4509 0.38 -1.1
5,385,245 - Echvi_4509 0.38 -2.1
5,385,245 - Echvi_4509 0.38 +0.5
5,385,286 - Echvi_4509 0.42 -0.1
5,385,286 - Echvi_4509 0.42 +0.1
5,385,313 + Echvi_4509 0.46 -0.8
5,385,344 - Echvi_4509 0.49 -1.2
5,385,344 - Echvi_4509 0.49 -1.1
5,385,353 + Echvi_4509 0.51 +0.3
5,385,354 - Echvi_4509 0.51 +0.3
5,385,359 + Echvi_4509 0.51 -2.0
5,385,360 - Echvi_4509 0.51 +0.4
5,385,413 - Echvi_4509 0.58 -0.5
5,385,454 - Echvi_4509 0.63 -0.5
5,385,454 - Echvi_4509 0.63 +0.4
5,385,456 - Echvi_4509 0.63 +0.1
5,385,462 - Echvi_4509 0.64 +0.2
5,385,462 - Echvi_4509 0.64 -0.3
5,385,462 - Echvi_4509 0.64 -0.2
5,385,588 + Echvi_4509 0.79 -0.6
5,385,609 - Echvi_4509 0.81 -0.4
5,385,629 - Echvi_4509 0.84 +0.2
5,385,684 - +0.6
5,385,701 + -1.7
5,385,702 - -0.0
5,385,719 - -0.4
5,385,719 - -0.6
5,385,793 + +1.6
5,385,876 + +0.9
5,385,953 + Echvi_4510 0.15 -1.0
5,385,955 + Echvi_4510 0.15 +0.1
5,385,956 - Echvi_4510 0.15 -0.1
5,386,080 + Echvi_4510 0.25 +2.8
5,386,101 + Echvi_4510 0.27 +1.4
5,386,102 - Echvi_4510 0.27 -1.8
5,386,228 + Echvi_4510 0.37 +0.4
5,386,228 + Echvi_4510 0.37 +0.3
5,386,228 + Echvi_4510 0.37 +0.3
5,386,229 - Echvi_4510 0.37 +0.0
5,386,229 - Echvi_4510 0.37 -1.7
5,386,371 + Echvi_4510 0.49 -1.8
5,386,371 + Echvi_4510 0.49 +0.3
5,386,412 + Echvi_4510 0.52 -2.5
5,386,498 - Echvi_4510 0.60 -0.1
5,386,633 - Echvi_4510 0.71 -1.0

Or see this region's nucleotide sequence