Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4259

Experiment: m.b. Thallium(I) acetate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4258 and Echvi_4259 are separated by 178 nucleotidesEchvi_4259 and Echvi_4260 are separated by 138 nucleotidesEchvi_4260 and Echvi_4261 overlap by 37 nucleotidesEchvi_4261 and Echvi_4262 are separated by 17 nucleotides Echvi_4258: Echvi_4258 - TonB-linked outer membrane protein, SusC/RagA family, at 5,109,599 to 5,112,673 _4258 Echvi_4259: Echvi_4259 - His Kinase A (phosphoacceptor) domain./Response regulator receiver domain./Y_Y_Y domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Two component regulator propeller./Bacterial regulatory helix-turn-helix proteins, AraC family., at 5,112,852 to 5,116,934 _4259 Echvi_4260: Echvi_4260 - hypothetical protein, at 5,117,073 to 5,117,318 _4260 Echvi_4261: Echvi_4261 - hypothetical protein, at 5,117,282 to 5,117,581 _4261 Echvi_4262: Echvi_4262 - Transcription elongation factor, at 5,117,599 to 5,117,973 _4262 Position (kb) 5112 5113 5114 5115 5116 5117Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5111.934 kb on + strand, within Echvi_4258at 5111.935 kb on - strand, within Echvi_4258at 5112.011 kb on + strand, within Echvi_4258at 5112.012 kb on - strand, within Echvi_4258at 5112.040 kb on + strand, within Echvi_4258at 5112.040 kb on + strand, within Echvi_4258at 5112.093 kb on - strand, within Echvi_4258at 5112.134 kb on - strand, within Echvi_4258at 5112.208 kb on + strand, within Echvi_4258at 5112.209 kb on - strand, within Echvi_4258at 5112.227 kb on + strand, within Echvi_4258at 5112.238 kb on + strand, within Echvi_4258at 5112.421 kb on + strandat 5112.422 kb on - strandat 5112.422 kb on - strandat 5112.422 kb on - strandat 5112.431 kb on - strandat 5112.471 kb on + strandat 5112.474 kb on + strandat 5112.475 kb on - strandat 5112.475 kb on - strandat 5112.624 kb on - strandat 5112.659 kb on + strandat 5112.659 kb on + strandat 5112.659 kb on + strandat 5112.660 kb on - strandat 5112.660 kb on - strandat 5112.660 kb on - strandat 5112.661 kb on + strandat 5112.661 kb on + strandat 5112.662 kb on - strandat 5112.662 kb on - strandat 5112.662 kb on - strandat 5112.717 kb on + strandat 5112.717 kb on + strandat 5112.748 kb on - strandat 5112.812 kb on + strandat 5112.832 kb on + strandat 5112.878 kb on + strandat 5112.880 kb on + strandat 5112.881 kb on - strandat 5112.881 kb on - strandat 5112.881 kb on - strandat 5112.935 kb on + strandat 5112.940 kb on + strandat 5112.940 kb on + strandat 5112.941 kb on - strandat 5113.068 kb on + strandat 5113.069 kb on - strandat 5113.112 kb on - strandat 5113.191 kb on + strandat 5113.205 kb on + strandat 5113.353 kb on - strand, within Echvi_4259at 5113.358 kb on - strand, within Echvi_4259at 5113.358 kb on - strand, within Echvi_4259at 5113.393 kb on - strand, within Echvi_4259at 5113.393 kb on - strand, within Echvi_4259at 5113.433 kb on + strand, within Echvi_4259at 5113.436 kb on - strand, within Echvi_4259at 5113.436 kb on - strand, within Echvi_4259at 5113.576 kb on - strand, within Echvi_4259at 5113.608 kb on - strand, within Echvi_4259at 5113.608 kb on - strand, within Echvi_4259at 5113.609 kb on + strand, within Echvi_4259at 5113.609 kb on + strand, within Echvi_4259at 5113.609 kb on + strand, within Echvi_4259at 5113.610 kb on - strand, within Echvi_4259at 5113.724 kb on + strand, within Echvi_4259at 5113.830 kb on - strand, within Echvi_4259at 5113.906 kb on + strand, within Echvi_4259at 5113.955 kb on - strand, within Echvi_4259at 5114.024 kb on + strand, within Echvi_4259at 5114.025 kb on - strand, within Echvi_4259at 5114.101 kb on - strand, within Echvi_4259at 5114.219 kb on + strand, within Echvi_4259at 5114.219 kb on + strand, within Echvi_4259at 5114.257 kb on - strand, within Echvi_4259at 5114.316 kb on + strand, within Echvi_4259at 5114.325 kb on + strand, within Echvi_4259at 5114.326 kb on - strand, within Echvi_4259at 5114.342 kb on + strand, within Echvi_4259at 5114.343 kb on - strand, within Echvi_4259at 5114.345 kb on - strand, within Echvi_4259at 5114.389 kb on + strand, within Echvi_4259at 5114.389 kb on + strand, within Echvi_4259at 5114.451 kb on - strand, within Echvi_4259at 5114.527 kb on + strand, within Echvi_4259at 5114.554 kb on + strand, within Echvi_4259at 5114.554 kb on + strand, within Echvi_4259at 5114.555 kb on - strand, within Echvi_4259at 5114.595 kb on - strand, within Echvi_4259at 5114.595 kb on - strand, within Echvi_4259at 5114.596 kb on + strand, within Echvi_4259at 5114.596 kb on + strand, within Echvi_4259at 5114.596 kb on + strand, within Echvi_4259at 5114.596 kb on + strand, within Echvi_4259at 5114.597 kb on - strand, within Echvi_4259at 5114.597 kb on - strand, within Echvi_4259at 5114.597 kb on - strand, within Echvi_4259at 5114.708 kb on + strand, within Echvi_4259at 5114.709 kb on - strand, within Echvi_4259at 5114.709 kb on - strand, within Echvi_4259at 5114.709 kb on - strand, within Echvi_4259at 5114.710 kb on + strand, within Echvi_4259at 5114.710 kb on + strand, within Echvi_4259at 5114.710 kb on + strand, within Echvi_4259at 5114.710 kb on + strand, within Echvi_4259at 5114.710 kb on + strand, within Echvi_4259at 5114.710 kb on + strand, within Echvi_4259at 5114.711 kb on - strand, within Echvi_4259at 5114.794 kb on + strand, within Echvi_4259at 5114.795 kb on - strand, within Echvi_4259at 5114.800 kb on + strand, within Echvi_4259at 5114.800 kb on + strand, within Echvi_4259at 5114.800 kb on + strand, within Echvi_4259at 5114.800 kb on + strand, within Echvi_4259at 5114.800 kb on + strand, within Echvi_4259at 5114.800 kb on + strand, within Echvi_4259at 5114.801 kb on - strand, within Echvi_4259at 5114.801 kb on - strand, within Echvi_4259at 5114.801 kb on - strand, within Echvi_4259at 5114.805 kb on + strand, within Echvi_4259at 5114.805 kb on + strand, within Echvi_4259at 5114.805 kb on + strand, within Echvi_4259at 5114.805 kb on + strand, within Echvi_4259at 5114.806 kb on - strand, within Echvi_4259at 5114.806 kb on - strand, within Echvi_4259at 5114.825 kb on - strand, within Echvi_4259at 5114.895 kb on + strand, within Echvi_4259at 5114.994 kb on + strand, within Echvi_4259at 5114.995 kb on - strand, within Echvi_4259at 5114.995 kb on - strand, within Echvi_4259at 5114.995 kb on - strand, within Echvi_4259at 5115.011 kb on + strand, within Echvi_4259at 5115.061 kb on + strand, within Echvi_4259at 5115.062 kb on - strand, within Echvi_4259at 5115.149 kb on - strand, within Echvi_4259at 5115.339 kb on + strand, within Echvi_4259at 5115.339 kb on + strand, within Echvi_4259at 5115.339 kb on + strand, within Echvi_4259at 5115.340 kb on - strand, within Echvi_4259at 5115.340 kb on - strand, within Echvi_4259at 5115.451 kb on + strandat 5115.452 kb on - strand, within Echvi_4259at 5115.452 kb on - strand, within Echvi_4259at 5115.452 kb on - strand, within Echvi_4259at 5115.453 kb on + strand, within Echvi_4259at 5115.454 kb on - strand, within Echvi_4259at 5115.570 kb on - strand, within Echvi_4259at 5115.571 kb on + strand, within Echvi_4259at 5115.571 kb on + strand, within Echvi_4259at 5115.572 kb on - strand, within Echvi_4259at 5115.607 kb on + strand, within Echvi_4259at 5115.658 kb on + strand, within Echvi_4259at 5115.658 kb on + strand, within Echvi_4259at 5115.658 kb on + strand, within Echvi_4259at 5115.658 kb on + strand, within Echvi_4259at 5115.658 kb on + strand, within Echvi_4259at 5115.659 kb on - strand, within Echvi_4259at 5115.659 kb on - strand, within Echvi_4259at 5115.659 kb on - strand, within Echvi_4259at 5115.662 kb on + strand, within Echvi_4259at 5115.662 kb on + strand, within Echvi_4259at 5115.662 kb on + strand, within Echvi_4259at 5115.662 kb on + strand, within Echvi_4259at 5115.662 kb on + strand, within Echvi_4259at 5115.662 kb on + strand, within Echvi_4259at 5115.663 kb on - strand, within Echvi_4259at 5115.663 kb on - strand, within Echvi_4259at 5115.663 kb on - strand, within Echvi_4259at 5115.663 kb on - strand, within Echvi_4259at 5115.757 kb on + strand, within Echvi_4259at 5115.757 kb on + strand, within Echvi_4259at 5115.846 kb on + strand, within Echvi_4259at 5115.849 kb on - strand, within Echvi_4259at 5115.878 kb on + strand, within Echvi_4259at 5115.990 kb on + strand, within Echvi_4259at 5115.991 kb on - strand, within Echvi_4259at 5116.098 kb on + strand, within Echvi_4259at 5116.162 kb on + strand, within Echvi_4259at 5116.168 kb on + strand, within Echvi_4259at 5116.207 kb on + strand, within Echvi_4259at 5116.267 kb on - strand, within Echvi_4259at 5116.275 kb on + strand, within Echvi_4259at 5116.286 kb on + strand, within Echvi_4259at 5116.334 kb on + strand, within Echvi_4259at 5116.390 kb on + strand, within Echvi_4259at 5116.390 kb on + strand, within Echvi_4259at 5116.390 kb on + strand, within Echvi_4259at 5116.391 kb on - strand, within Echvi_4259at 5116.524 kb on + strand, within Echvi_4259at 5116.558 kb on + strandat 5116.561 kb on + strandat 5116.588 kb on + strandat 5116.594 kb on + strandat 5116.596 kb on + strandat 5116.597 kb on - strandat 5116.627 kb on - strandat 5116.627 kb on - strandat 5116.650 kb on - strandat 5116.744 kb on + strandat 5116.745 kb on - strandat 5116.745 kb on - strandat 5116.745 kb on - strandat 5116.745 kb on - strandat 5116.772 kb on + strandat 5116.826 kb on + strandat 5116.826 kb on + strandat 5116.829 kb on - strandat 5116.936 kb on + strandat 5116.943 kb on + strandat 5116.943 kb on + strandat 5116.944 kb on - strandat 5117.154 kb on + strand, within Echvi_4260at 5117.154 kb on + strand, within Echvi_4260at 5117.155 kb on - strand, within Echvi_4260at 5117.155 kb on - strand, within Echvi_4260at 5117.156 kb on + strand, within Echvi_4260at 5117.157 kb on - strand, within Echvi_4260at 5117.174 kb on + strand, within Echvi_4260at 5117.181 kb on + strand, within Echvi_4260at 5117.181 kb on + strand, within Echvi_4260at 5117.204 kb on + strand, within Echvi_4260at 5117.205 kb on - strand, within Echvi_4260at 5117.205 kb on - strand, within Echvi_4260at 5117.217 kb on + strand, within Echvi_4260at 5117.428 kb on - strand, within Echvi_4261at 5117.473 kb on - strand, within Echvi_4261at 5117.577 kb on + strandat 5117.578 kb on - strandat 5117.609 kb on + strandat 5117.613 kb on + strandat 5117.614 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.05 mg/ml
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5,111,934 + Echvi_4258 0.76 +0.1
5,111,935 - Echvi_4258 0.76 -0.8
5,112,011 + Echvi_4258 0.78 -0.6
5,112,012 - Echvi_4258 0.78 -0.3
5,112,040 + Echvi_4258 0.79 -0.8
5,112,040 + Echvi_4258 0.79 +1.0
5,112,093 - Echvi_4258 0.81 +0.2
5,112,134 - Echvi_4258 0.82 +0.1
5,112,208 + Echvi_4258 0.85 -0.9
5,112,209 - Echvi_4258 0.85 -1.0
5,112,227 + Echvi_4258 0.85 +1.5
5,112,238 + Echvi_4258 0.86 -0.4
5,112,421 + -0.3
5,112,422 - +0.2
5,112,422 - +0.4
5,112,422 - +0.7
5,112,431 - +0.6
5,112,471 + +0.1
5,112,474 + -0.7
5,112,475 - -0.7
5,112,475 - -0.4
5,112,624 - +0.1
5,112,659 + -1.1
5,112,659 + -0.7
5,112,659 + -0.2
5,112,660 - +0.3
5,112,660 - -1.4
5,112,660 - +0.6
5,112,661 + +0.0
5,112,661 + -0.8
5,112,662 - -0.5
5,112,662 - -2.5
5,112,662 - +1.5
5,112,717 + -0.3
5,112,717 + -0.8
5,112,748 - +1.3
5,112,812 + +0.0
5,112,832 + +0.2
5,112,878 + +1.1
5,112,880 + -0.5
5,112,881 - +0.3
5,112,881 - +0.2
5,112,881 - -0.9
5,112,935 + -1.0
5,112,940 + -0.5
5,112,940 + -0.5
5,112,941 - +0.0
5,113,068 + +0.3
5,113,069 - +0.0
5,113,112 - +0.9
5,113,191 + +0.7
5,113,205 + -0.7
5,113,353 - Echvi_4259 0.12 +1.0
5,113,358 - Echvi_4259 0.12 -0.5
5,113,358 - Echvi_4259 0.12 -0.6
5,113,393 - Echvi_4259 0.13 -1.9
5,113,393 - Echvi_4259 0.13 +0.0
5,113,433 + Echvi_4259 0.14 -1.3
5,113,436 - Echvi_4259 0.14 -0.1
5,113,436 - Echvi_4259 0.14 +0.1
5,113,576 - Echvi_4259 0.18 -0.2
5,113,608 - Echvi_4259 0.19 +0.3
5,113,608 - Echvi_4259 0.19 -0.5
5,113,609 + Echvi_4259 0.19 +0.3
5,113,609 + Echvi_4259 0.19 +0.2
5,113,609 + Echvi_4259 0.19 +0.4
5,113,610 - Echvi_4259 0.19 -0.3
5,113,724 + Echvi_4259 0.21 +1.2
5,113,830 - Echvi_4259 0.24 +1.1
5,113,906 + Echvi_4259 0.26 +0.6
5,113,955 - Echvi_4259 0.27 -0.4
5,114,024 + Echvi_4259 0.29 +0.5
5,114,025 - Echvi_4259 0.29 -1.0
5,114,101 - Echvi_4259 0.31 +2.2
5,114,219 + Echvi_4259 0.33 +1.4
5,114,219 + Echvi_4259 0.33 -0.1
5,114,257 - Echvi_4259 0.34 -0.3
5,114,316 + Echvi_4259 0.36 -1.4
5,114,325 + Echvi_4259 0.36 -0.5
5,114,326 - Echvi_4259 0.36 +0.1
5,114,342 + Echvi_4259 0.36 +0.0
5,114,343 - Echvi_4259 0.37 -1.8
5,114,345 - Echvi_4259 0.37 +0.5
5,114,389 + Echvi_4259 0.38 -1.1
5,114,389 + Echvi_4259 0.38 +1.7
5,114,451 - Echvi_4259 0.39 +0.6
5,114,527 + Echvi_4259 0.41 +1.6
5,114,554 + Echvi_4259 0.42 +0.1
5,114,554 + Echvi_4259 0.42 -0.8
5,114,555 - Echvi_4259 0.42 +0.3
5,114,595 - Echvi_4259 0.43 -0.8
5,114,595 - Echvi_4259 0.43 -0.4
5,114,596 + Echvi_4259 0.43 -0.5
5,114,596 + Echvi_4259 0.43 -2.1
5,114,596 + Echvi_4259 0.43 -0.8
5,114,596 + Echvi_4259 0.43 +0.8
5,114,597 - Echvi_4259 0.43 -1.9
5,114,597 - Echvi_4259 0.43 -0.5
5,114,597 - Echvi_4259 0.43 -0.7
5,114,708 + Echvi_4259 0.45 -0.1
5,114,709 - Echvi_4259 0.45 +0.2
5,114,709 - Echvi_4259 0.45 -0.6
5,114,709 - Echvi_4259 0.45 -0.7
5,114,710 + Echvi_4259 0.46 +0.2
5,114,710 + Echvi_4259 0.46 -1.3
5,114,710 + Echvi_4259 0.46 +1.2
5,114,710 + Echvi_4259 0.46 -0.8
5,114,710 + Echvi_4259 0.46 +2.1
5,114,710 + Echvi_4259 0.46 +0.7
5,114,711 - Echvi_4259 0.46 +0.2
5,114,794 + Echvi_4259 0.48 +0.8
5,114,795 - Echvi_4259 0.48 -0.6
5,114,800 + Echvi_4259 0.48 -1.4
5,114,800 + Echvi_4259 0.48 -0.3
5,114,800 + Echvi_4259 0.48 -1.4
5,114,800 + Echvi_4259 0.48 -0.8
5,114,800 + Echvi_4259 0.48 -0.2
5,114,800 + Echvi_4259 0.48 -0.5
5,114,801 - Echvi_4259 0.48 +2.0
5,114,801 - Echvi_4259 0.48 +0.4
5,114,801 - Echvi_4259 0.48 -0.6
5,114,805 + Echvi_4259 0.48 +0.0
5,114,805 + Echvi_4259 0.48 -0.2
5,114,805 + Echvi_4259 0.48 +0.6
5,114,805 + Echvi_4259 0.48 +0.3
5,114,806 - Echvi_4259 0.48 +0.4
5,114,806 - Echvi_4259 0.48 -0.1
5,114,825 - Echvi_4259 0.48 -1.1
5,114,895 + Echvi_4259 0.50 -0.8
5,114,994 + Echvi_4259 0.52 +0.2
5,114,995 - Echvi_4259 0.52 -0.6
5,114,995 - Echvi_4259 0.52 -0.0
5,114,995 - Echvi_4259 0.52 +0.3
5,115,011 + Echvi_4259 0.53 +0.5
5,115,061 + Echvi_4259 0.54 -0.0
5,115,062 - Echvi_4259 0.54 -0.6
5,115,149 - Echvi_4259 0.56 -0.3
5,115,339 + Echvi_4259 0.61 -0.1
5,115,339 + Echvi_4259 0.61 -0.9
5,115,339 + Echvi_4259 0.61 +0.0
5,115,340 - Echvi_4259 0.61 -0.4
5,115,340 - Echvi_4259 0.61 +1.0
5,115,451 + -0.2
5,115,452 - Echvi_4259 0.64 -0.5
5,115,452 - Echvi_4259 0.64 -0.6
5,115,452 - Echvi_4259 0.64 -0.1
5,115,453 + Echvi_4259 0.64 -0.5
5,115,454 - Echvi_4259 0.64 -1.8
5,115,570 - Echvi_4259 0.67 -0.4
5,115,571 + Echvi_4259 0.67 -0.1
5,115,571 + Echvi_4259 0.67 +0.6
5,115,572 - Echvi_4259 0.67 +0.6
5,115,607 + Echvi_4259 0.67 +0.2
5,115,658 + Echvi_4259 0.69 +0.4
5,115,658 + Echvi_4259 0.69 +1.1
5,115,658 + Echvi_4259 0.69 -0.2
5,115,658 + Echvi_4259 0.69 -1.2
5,115,658 + Echvi_4259 0.69 -0.2
5,115,659 - Echvi_4259 0.69 -0.4
5,115,659 - Echvi_4259 0.69 +1.1
5,115,659 - Echvi_4259 0.69 -1.6
5,115,662 + Echvi_4259 0.69 -1.4
5,115,662 + Echvi_4259 0.69 -0.1
5,115,662 + Echvi_4259 0.69 -0.2
5,115,662 + Echvi_4259 0.69 +0.7
5,115,662 + Echvi_4259 0.69 -0.4
5,115,662 + Echvi_4259 0.69 -0.4
5,115,663 - Echvi_4259 0.69 +0.3
5,115,663 - Echvi_4259 0.69 -0.7
5,115,663 - Echvi_4259 0.69 -0.9
5,115,663 - Echvi_4259 0.69 -1.2
5,115,757 + Echvi_4259 0.71 -0.9
5,115,757 + Echvi_4259 0.71 +0.2
5,115,846 + Echvi_4259 0.73 +0.5
5,115,849 - Echvi_4259 0.73 -0.1
5,115,878 + Echvi_4259 0.74 +0.5
5,115,990 + Echvi_4259 0.77 +0.7
5,115,991 - Echvi_4259 0.77 -1.4
5,116,098 + Echvi_4259 0.80 -1.6
5,116,162 + Echvi_4259 0.81 +0.5
5,116,168 + Echvi_4259 0.81 -0.3
5,116,207 + Echvi_4259 0.82 +0.0
5,116,267 - Echvi_4259 0.84 +0.4
5,116,275 + Echvi_4259 0.84 -0.3
5,116,286 + Echvi_4259 0.84 +0.1
5,116,334 + Echvi_4259 0.85 +1.0
5,116,390 + Echvi_4259 0.87 -0.5
5,116,390 + Echvi_4259 0.87 -0.0
5,116,390 + Echvi_4259 0.87 +0.6
5,116,391 - Echvi_4259 0.87 -1.1
5,116,524 + Echvi_4259 0.90 -0.6
5,116,558 + -0.1
5,116,561 + +0.8
5,116,588 + +0.9
5,116,594 + -1.5
5,116,596 + -0.7
5,116,597 - -1.5
5,116,627 - +1.5
5,116,627 - +0.8
5,116,650 - -0.3
5,116,744 + -1.6
5,116,745 - +0.5
5,116,745 - +0.2
5,116,745 - -1.0
5,116,745 - -2.8
5,116,772 + -0.4
5,116,826 + +0.1
5,116,826 + -0.8
5,116,829 - +0.5
5,116,936 + -1.7
5,116,943 + +0.8
5,116,943 + +0.4
5,116,944 - +1.2
5,117,154 + Echvi_4260 0.33 -0.4
5,117,154 + Echvi_4260 0.33 -0.2
5,117,155 - Echvi_4260 0.33 +0.4
5,117,155 - Echvi_4260 0.33 -1.0
5,117,156 + Echvi_4260 0.34 -1.0
5,117,157 - Echvi_4260 0.34 -1.0
5,117,174 + Echvi_4260 0.41 -0.2
5,117,181 + Echvi_4260 0.44 -1.9
5,117,181 + Echvi_4260 0.44 -1.0
5,117,204 + Echvi_4260 0.53 -0.1
5,117,205 - Echvi_4260 0.54 +0.2
5,117,205 - Echvi_4260 0.54 -0.4
5,117,217 + Echvi_4260 0.59 +0.0
5,117,428 - Echvi_4261 0.49 -1.9
5,117,473 - Echvi_4261 0.64 +0.1
5,117,577 + -1.5
5,117,578 - +0.8
5,117,609 + -0.1
5,117,613 + -0.3
5,117,614 - -0.9

Or see this region's nucleotide sequence