Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2950

Experiment: m.b. Thallium(I) acetate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2949 and Echvi_2950 are separated by 4 nucleotidesEchvi_2950 and Echvi_2951 are separated by 434 nucleotides Echvi_2949: Echvi_2949 - NADPH:quinone reductase and related Zn-dependent oxidoreductases, at 3,526,841 to 3,527,839 _2949 Echvi_2950: Echvi_2950 - hypothetical protein, at 3,527,844 to 3,528,179 _2950 Echvi_2951: Echvi_2951 - Electron transfer flavoprotein, beta subunit, at 3,528,614 to 3,529,351 _2951 Position (kb) 3527 3528 3529Strain fitness (log2 ratio) -2 -1 0 1 2at 3526.912 kb on - strandat 3526.912 kb on - strandat 3526.954 kb on - strand, within Echvi_2949at 3527.131 kb on - strand, within Echvi_2949at 3527.294 kb on + strand, within Echvi_2949at 3527.294 kb on + strand, within Echvi_2949at 3527.307 kb on + strand, within Echvi_2949at 3527.307 kb on + strand, within Echvi_2949at 3527.325 kb on + strand, within Echvi_2949at 3527.326 kb on - strand, within Echvi_2949at 3527.399 kb on + strand, within Echvi_2949at 3527.404 kb on - strand, within Echvi_2949at 3527.404 kb on - strand, within Echvi_2949at 3527.464 kb on + strand, within Echvi_2949at 3527.470 kb on + strand, within Echvi_2949at 3527.548 kb on + strand, within Echvi_2949at 3527.608 kb on + strand, within Echvi_2949at 3527.608 kb on + strand, within Echvi_2949at 3527.608 kb on + strand, within Echvi_2949at 3527.609 kb on - strand, within Echvi_2949at 3527.835 kb on + strandat 3527.837 kb on + strandat 3527.950 kb on + strand, within Echvi_2950at 3527.951 kb on - strand, within Echvi_2950at 3528.011 kb on - strand, within Echvi_2950at 3528.011 kb on - strand, within Echvi_2950at 3528.011 kb on - strand, within Echvi_2950at 3528.011 kb on - strand, within Echvi_2950at 3528.014 kb on + strand, within Echvi_2950at 3528.015 kb on - strand, within Echvi_2950at 3528.022 kb on + strand, within Echvi_2950at 3528.072 kb on + strand, within Echvi_2950at 3528.072 kb on + strand, within Echvi_2950at 3528.073 kb on - strand, within Echvi_2950at 3528.073 kb on - strand, within Echvi_2950at 3528.073 kb on - strand, within Echvi_2950at 3528.081 kb on - strand, within Echvi_2950at 3528.197 kb on - strandat 3528.224 kb on + strandat 3528.224 kb on + strandat 3528.224 kb on + strandat 3528.225 kb on - strandat 3528.225 kb on - strandat 3528.227 kb on - strandat 3528.227 kb on - strandat 3528.232 kb on - strandat 3528.244 kb on - strandat 3528.299 kb on - strandat 3528.309 kb on - strandat 3528.321 kb on - strandat 3528.348 kb on + strandat 3528.421 kb on + strandat 3528.421 kb on + strandat 3528.493 kb on + strandat 3528.544 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.05 mg/ml
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3,526,912 - -0.2
3,526,912 - +0.0
3,526,954 - Echvi_2949 0.11 +0.6
3,527,131 - Echvi_2949 0.29 -0.7
3,527,294 + Echvi_2949 0.45 -0.2
3,527,294 + Echvi_2949 0.45 -2.1
3,527,307 + Echvi_2949 0.47 -0.8
3,527,307 + Echvi_2949 0.47 -1.1
3,527,325 + Echvi_2949 0.48 +0.1
3,527,326 - Echvi_2949 0.49 +0.3
3,527,399 + Echvi_2949 0.56 -1.9
3,527,404 - Echvi_2949 0.56 +0.7
3,527,404 - Echvi_2949 0.56 -0.1
3,527,464 + Echvi_2949 0.62 -1.4
3,527,470 + Echvi_2949 0.63 +0.1
3,527,548 + Echvi_2949 0.71 -0.9
3,527,608 + Echvi_2949 0.77 -1.3
3,527,608 + Echvi_2949 0.77 -0.2
3,527,608 + Echvi_2949 0.77 +0.4
3,527,609 - Echvi_2949 0.77 +0.2
3,527,835 + -0.6
3,527,837 + -0.4
3,527,950 + Echvi_2950 0.32 +2.1
3,527,951 - Echvi_2950 0.32 +0.9
3,528,011 - Echvi_2950 0.50 -0.3
3,528,011 - Echvi_2950 0.50 +0.2
3,528,011 - Echvi_2950 0.50 +0.4
3,528,011 - Echvi_2950 0.50 -0.1
3,528,014 + Echvi_2950 0.51 -1.3
3,528,015 - Echvi_2950 0.51 -2.6
3,528,022 + Echvi_2950 0.53 -0.3
3,528,072 + Echvi_2950 0.68 +0.2
3,528,072 + Echvi_2950 0.68 +0.0
3,528,073 - Echvi_2950 0.68 -1.0
3,528,073 - Echvi_2950 0.68 +0.6
3,528,073 - Echvi_2950 0.68 +0.6
3,528,081 - Echvi_2950 0.71 -0.2
3,528,197 - +1.7
3,528,224 + -0.1
3,528,224 + -0.8
3,528,224 + -1.0
3,528,225 - +0.1
3,528,225 - +0.4
3,528,227 - -0.6
3,528,227 - +0.3
3,528,232 - -1.2
3,528,244 - -0.8
3,528,299 - -0.7
3,528,309 - -1.3
3,528,321 - -2.1
3,528,348 + -0.5
3,528,421 + +0.0
3,528,421 + +0.0
3,528,493 + -1.2
3,528,544 - -1.8

Or see this region's nucleotide sequence