Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2530

Experiment: m.b. Thallium(I) acetate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2529 and Echvi_2530 are separated by 96 nucleotidesEchvi_2530 and Echvi_2531 are separated by 324 nucleotides Echvi_2529: Echvi_2529 - Acyl-CoA reductase (LuxC)., at 3,002,900 to 3,003,916 _2529 Echvi_2530: Echvi_2530 - Short chain fatty acids transporter, at 3,004,013 to 3,005,320 _2530 Echvi_2531: Echvi_2531 - aconitate hydratase, mitochondrial, at 3,005,645 to 3,007,918 _2531 Position (kb) 3004 3005 3006Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3003.016 kb on + strand, within Echvi_2529at 3003.017 kb on - strand, within Echvi_2529at 3003.205 kb on + strand, within Echvi_2529at 3003.206 kb on - strand, within Echvi_2529at 3003.206 kb on - strand, within Echvi_2529at 3003.206 kb on - strand, within Echvi_2529at 3003.224 kb on - strand, within Echvi_2529at 3003.247 kb on + strand, within Echvi_2529at 3003.248 kb on - strand, within Echvi_2529at 3003.275 kb on - strand, within Echvi_2529at 3003.318 kb on + strand, within Echvi_2529at 3003.335 kb on + strand, within Echvi_2529at 3003.381 kb on - strand, within Echvi_2529at 3003.402 kb on + strand, within Echvi_2529at 3003.402 kb on + strand, within Echvi_2529at 3003.491 kb on + strand, within Echvi_2529at 3003.492 kb on - strand, within Echvi_2529at 3003.492 kb on - strand, within Echvi_2529at 3003.550 kb on - strand, within Echvi_2529at 3003.580 kb on + strand, within Echvi_2529at 3003.580 kb on + strand, within Echvi_2529at 3003.580 kb on + strand, within Echvi_2529at 3003.580 kb on + strand, within Echvi_2529at 3003.601 kb on + strand, within Echvi_2529at 3003.601 kb on + strand, within Echvi_2529at 3003.605 kb on + strand, within Echvi_2529at 3003.614 kb on - strand, within Echvi_2529at 3003.614 kb on - strand, within Echvi_2529at 3003.618 kb on - strand, within Echvi_2529at 3003.624 kb on - strand, within Echvi_2529at 3003.624 kb on - strand, within Echvi_2529at 3003.638 kb on + strand, within Echvi_2529at 3003.638 kb on + strand, within Echvi_2529at 3003.639 kb on - strand, within Echvi_2529at 3003.723 kb on + strand, within Echvi_2529at 3003.723 kb on + strand, within Echvi_2529at 3003.723 kb on + strand, within Echvi_2529at 3003.724 kb on - strand, within Echvi_2529at 3003.725 kb on + strand, within Echvi_2529at 3003.726 kb on - strand, within Echvi_2529at 3003.726 kb on - strand, within Echvi_2529at 3003.729 kb on - strand, within Echvi_2529at 3003.737 kb on + strand, within Echvi_2529at 3003.737 kb on + strand, within Echvi_2529at 3003.763 kb on + strand, within Echvi_2529at 3003.805 kb on + strand, within Echvi_2529at 3003.806 kb on - strand, within Echvi_2529at 3003.869 kb on + strandat 3003.909 kb on + strandat 3003.910 kb on - strandat 3003.930 kb on + strandat 3003.931 kb on - strandat 3003.987 kb on + strandat 3003.988 kb on - strandat 3003.993 kb on - strandat 3003.993 kb on - strandat 3004.084 kb on + strandat 3004.085 kb on - strandat 3004.138 kb on + strandat 3004.139 kb on - strandat 3004.346 kb on - strand, within Echvi_2530at 3004.368 kb on + strand, within Echvi_2530at 3004.368 kb on + strand, within Echvi_2530at 3004.368 kb on + strand, within Echvi_2530at 3004.368 kb on + strand, within Echvi_2530at 3004.426 kb on + strand, within Echvi_2530at 3004.427 kb on - strand, within Echvi_2530at 3004.427 kb on - strand, within Echvi_2530at 3004.427 kb on - strand, within Echvi_2530at 3004.572 kb on + strand, within Echvi_2530at 3004.572 kb on + strand, within Echvi_2530at 3004.572 kb on + strand, within Echvi_2530at 3004.572 kb on + strand, within Echvi_2530at 3004.572 kb on + strand, within Echvi_2530at 3004.573 kb on - strand, within Echvi_2530at 3004.588 kb on - strand, within Echvi_2530at 3004.657 kb on + strand, within Echvi_2530at 3004.796 kb on - strand, within Echvi_2530at 3004.799 kb on - strand, within Echvi_2530at 3004.799 kb on - strand, within Echvi_2530at 3004.809 kb on - strand, within Echvi_2530at 3004.928 kb on + strand, within Echvi_2530at 3004.929 kb on - strand, within Echvi_2530at 3004.942 kb on - strand, within Echvi_2530at 3004.951 kb on + strand, within Echvi_2530at 3004.951 kb on + strand, within Echvi_2530at 3004.951 kb on + strand, within Echvi_2530at 3004.952 kb on - strand, within Echvi_2530at 3004.952 kb on - strand, within Echvi_2530at 3004.952 kb on - strand, within Echvi_2530at 3004.952 kb on - strand, within Echvi_2530at 3004.952 kb on - strand, within Echvi_2530at 3004.986 kb on - strand, within Echvi_2530at 3005.032 kb on + strand, within Echvi_2530at 3005.033 kb on - strand, within Echvi_2530at 3005.033 kb on - strand, within Echvi_2530at 3005.116 kb on + strand, within Echvi_2530at 3005.143 kb on + strand, within Echvi_2530at 3005.144 kb on - strand, within Echvi_2530at 3005.211 kb on + strandat 3005.255 kb on - strandat 3005.274 kb on + strandat 3005.274 kb on + strandat 3005.274 kb on + strandat 3005.275 kb on - strandat 3005.319 kb on - strandat 3005.323 kb on + strandat 3005.324 kb on - strandat 3005.324 kb on - strandat 3005.324 kb on - strandat 3005.340 kb on + strandat 3005.341 kb on - strandat 3005.341 kb on - strandat 3005.429 kb on - strandat 3005.433 kb on - strandat 3005.433 kb on - strandat 3005.486 kb on - strandat 3005.499 kb on - strandat 3005.501 kb on - strandat 3005.507 kb on - strandat 3005.546 kb on + strandat 3005.547 kb on - strandat 3005.552 kb on + strandat 3005.553 kb on - strandat 3005.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.05 mg/ml
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3,003,016 + Echvi_2529 0.11 -1.1
3,003,017 - Echvi_2529 0.12 -2.1
3,003,205 + Echvi_2529 0.30 -0.6
3,003,206 - Echvi_2529 0.30 -1.4
3,003,206 - Echvi_2529 0.30 -1.5
3,003,206 - Echvi_2529 0.30 -0.8
3,003,224 - Echvi_2529 0.32 -0.2
3,003,247 + Echvi_2529 0.34 -2.8
3,003,248 - Echvi_2529 0.34 -1.6
3,003,275 - Echvi_2529 0.37 -0.9
3,003,318 + Echvi_2529 0.41 +1.1
3,003,335 + Echvi_2529 0.43 -2.8
3,003,381 - Echvi_2529 0.47 +0.8
3,003,402 + Echvi_2529 0.49 -0.6
3,003,402 + Echvi_2529 0.49 -0.0
3,003,491 + Echvi_2529 0.58 +0.1
3,003,492 - Echvi_2529 0.58 -0.5
3,003,492 - Echvi_2529 0.58 -1.1
3,003,550 - Echvi_2529 0.64 -0.9
3,003,580 + Echvi_2529 0.67 -0.2
3,003,580 + Echvi_2529 0.67 -1.0
3,003,580 + Echvi_2529 0.67 -0.6
3,003,580 + Echvi_2529 0.67 +1.4
3,003,601 + Echvi_2529 0.69 -0.2
3,003,601 + Echvi_2529 0.69 -0.1
3,003,605 + Echvi_2529 0.69 -0.7
3,003,614 - Echvi_2529 0.70 -1.7
3,003,614 - Echvi_2529 0.70 +1.3
3,003,618 - Echvi_2529 0.71 -1.5
3,003,624 - Echvi_2529 0.71 +1.1
3,003,624 - Echvi_2529 0.71 +0.7
3,003,638 + Echvi_2529 0.73 -0.0
3,003,638 + Echvi_2529 0.73 -1.0
3,003,639 - Echvi_2529 0.73 -1.1
3,003,723 + Echvi_2529 0.81 +0.0
3,003,723 + Echvi_2529 0.81 -0.3
3,003,723 + Echvi_2529 0.81 -1.0
3,003,724 - Echvi_2529 0.81 -2.0
3,003,725 + Echvi_2529 0.81 -0.4
3,003,726 - Echvi_2529 0.81 -1.3
3,003,726 - Echvi_2529 0.81 -1.2
3,003,729 - Echvi_2529 0.82 -1.1
3,003,737 + Echvi_2529 0.82 +1.5
3,003,737 + Echvi_2529 0.82 +0.2
3,003,763 + Echvi_2529 0.85 -0.2
3,003,805 + Echvi_2529 0.89 -0.4
3,003,806 - Echvi_2529 0.89 -1.2
3,003,869 + -1.2
3,003,909 + -0.5
3,003,910 - -0.1
3,003,930 + -0.0
3,003,931 - +0.3
3,003,987 + +0.4
3,003,988 - +0.5
3,003,993 - +0.6
3,003,993 - -0.5
3,004,084 + -0.3
3,004,085 - +0.2
3,004,138 + +0.8
3,004,139 - -1.0
3,004,346 - Echvi_2530 0.25 +0.5
3,004,368 + Echvi_2530 0.27 -1.3
3,004,368 + Echvi_2530 0.27 +0.0
3,004,368 + Echvi_2530 0.27 +1.3
3,004,368 + Echvi_2530 0.27 -0.2
3,004,426 + Echvi_2530 0.32 -2.0
3,004,427 - Echvi_2530 0.32 -1.8
3,004,427 - Echvi_2530 0.32 -0.5
3,004,427 - Echvi_2530 0.32 +0.7
3,004,572 + Echvi_2530 0.43 +0.4
3,004,572 + Echvi_2530 0.43 -1.1
3,004,572 + Echvi_2530 0.43 -2.6
3,004,572 + Echvi_2530 0.43 +0.4
3,004,572 + Echvi_2530 0.43 -0.9
3,004,573 - Echvi_2530 0.43 -0.2
3,004,588 - Echvi_2530 0.44 -0.5
3,004,657 + Echvi_2530 0.49 -1.2
3,004,796 - Echvi_2530 0.60 +1.4
3,004,799 - Echvi_2530 0.60 -1.8
3,004,799 - Echvi_2530 0.60 +1.2
3,004,809 - Echvi_2530 0.61 -1.5
3,004,928 + Echvi_2530 0.70 +0.2
3,004,929 - Echvi_2530 0.70 -0.6
3,004,942 - Echvi_2530 0.71 -0.0
3,004,951 + Echvi_2530 0.72 -0.8
3,004,951 + Echvi_2530 0.72 +0.2
3,004,951 + Echvi_2530 0.72 +0.7
3,004,952 - Echvi_2530 0.72 +0.5
3,004,952 - Echvi_2530 0.72 -1.0
3,004,952 - Echvi_2530 0.72 -0.4
3,004,952 - Echvi_2530 0.72 -0.2
3,004,952 - Echvi_2530 0.72 +0.1
3,004,986 - Echvi_2530 0.74 -0.1
3,005,032 + Echvi_2530 0.78 -0.4
3,005,033 - Echvi_2530 0.78 +0.7
3,005,033 - Echvi_2530 0.78 -0.6
3,005,116 + Echvi_2530 0.84 -0.5
3,005,143 + Echvi_2530 0.86 -0.2
3,005,144 - Echvi_2530 0.86 -1.0
3,005,211 + -0.7
3,005,255 - -1.0
3,005,274 + -0.5
3,005,274 + -0.1
3,005,274 + +0.5
3,005,275 - -1.1
3,005,319 - -1.5
3,005,323 + +0.3
3,005,324 - +1.9
3,005,324 - -0.2
3,005,324 - -0.3
3,005,340 + +0.3
3,005,341 - -0.1
3,005,341 - -0.2
3,005,429 - -0.0
3,005,433 - +0.1
3,005,433 - -0.1
3,005,486 - -0.8
3,005,499 - +0.2
3,005,501 - -0.2
3,005,507 - -0.8
3,005,546 + -1.1
3,005,547 - +0.8
3,005,552 + -0.2
3,005,553 - -0.3
3,005,553 - -0.9

Or see this region's nucleotide sequence