Experiment: m.b. Thallium(I) acetate 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1926 and Echvi_1927 are separated by 302 nucleotides Echvi_1927 and Echvi_1928 overlap by 47 nucleotides Echvi_1928 and Echvi_1929 overlap by 14 nucleotides Echvi_1929 and Echvi_1930 are separated by 83 nucleotides
Echvi_1926: Echvi_1926 - RNA polymerase sigma-70 factor, Bacteroides expansion family 1, at 2,269,915 to 2,270,496
_1926
Echvi_1927: Echvi_1927 - tRNA, at 2,270,799 to 2,270,872
_1927
Echvi_1928: Echvi_1928 - Site-specific recombinases, DNA invertase Pin homologs, at 2,270,826 to 2,272,391
_1928
Echvi_1929: Echvi_1929 - hypothetical protein, at 2,272,378 to 2,272,560
_1929
Echvi_1930: Echvi_1930 - DNA repair proteins, at 2,272,644 to 2,273,105
_1930
Position (kb)
2270
2271
2272
2273 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2269.837 kb on - strand at 2269.851 kb on - strand at 2269.879 kb on + strand at 2269.912 kb on - strand at 2269.912 kb on - strand at 2269.912 kb on - strand at 2269.916 kb on + strand at 2269.916 kb on + strand at 2269.928 kb on - strand at 2269.944 kb on + strand at 2269.949 kb on + strand at 2269.949 kb on + strand at 2269.950 kb on - strand at 2270.126 kb on - strand, within Echvi_1926 at 2270.152 kb on + strand, within Echvi_1926 at 2270.152 kb on + strand, within Echvi_1926 at 2270.153 kb on - strand, within Echvi_1926 at 2270.153 kb on - strand, within Echvi_1926 at 2270.153 kb on - strand, within Echvi_1926 at 2270.153 kb on - strand, within Echvi_1926 at 2270.153 kb on - strand, within Echvi_1926 at 2270.270 kb on + strand, within Echvi_1926 at 2270.271 kb on - strand, within Echvi_1926 at 2270.271 kb on - strand, within Echvi_1926 at 2270.368 kb on + strand, within Echvi_1926 at 2270.368 kb on + strand, within Echvi_1926 at 2270.368 kb on + strand, within Echvi_1926 at 2270.369 kb on - strand, within Echvi_1926 at 2270.369 kb on - strand, within Echvi_1926 at 2270.369 kb on - strand, within Echvi_1926 at 2270.374 kb on - strand, within Echvi_1926 at 2270.375 kb on + strand, within Echvi_1926 at 2270.375 kb on + strand, within Echvi_1926 at 2270.375 kb on + strand, within Echvi_1926 at 2270.375 kb on + strand, within Echvi_1926 at 2270.376 kb on - strand, within Echvi_1926 at 2270.376 kb on - strand, within Echvi_1926 at 2270.376 kb on - strand, within Echvi_1926 at 2270.381 kb on + strand, within Echvi_1926 at 2270.381 kb on + strand, within Echvi_1926 at 2270.382 kb on - strand, within Echvi_1926 at 2270.382 kb on - strand, within Echvi_1926 at 2270.388 kb on - strand, within Echvi_1926 at 2270.447 kb on - strand at 2270.458 kb on + strand at 2270.459 kb on - strand at 2270.459 kb on - strand at 2270.473 kb on + strand at 2270.475 kb on + strand at 2270.476 kb on - strand at 2270.476 kb on - strand at 2270.503 kb on - strand at 2270.503 kb on - strand at 2270.520 kb on + strand at 2270.521 kb on - strand at 2270.563 kb on + strand at 2270.699 kb on + strand at 2270.700 kb on - strand at 2270.785 kb on + strand at 2270.827 kb on + strand at 2270.841 kb on - strand at 2271.051 kb on - strand, within Echvi_1928 at 2271.168 kb on + strand, within Echvi_1928 at 2271.219 kb on + strand, within Echvi_1928 at 2271.221 kb on + strand, within Echvi_1928 at 2271.326 kb on - strand, within Echvi_1928 at 2271.351 kb on - strand, within Echvi_1928 at 2271.351 kb on - strand, within Echvi_1928 at 2271.355 kb on + strand, within Echvi_1928 at 2271.405 kb on + strand, within Echvi_1928 at 2271.405 kb on + strand, within Echvi_1928 at 2271.405 kb on + strand, within Echvi_1928 at 2271.405 kb on + strand, within Echvi_1928 at 2271.406 kb on - strand, within Echvi_1928 at 2271.407 kb on + strand, within Echvi_1928 at 2271.408 kb on - strand, within Echvi_1928 at 2271.408 kb on - strand, within Echvi_1928 at 2271.409 kb on + strand, within Echvi_1928 at 2271.409 kb on + strand, within Echvi_1928 at 2271.409 kb on + strand, within Echvi_1928 at 2271.440 kb on - strand, within Echvi_1928 at 2271.464 kb on - strand, within Echvi_1928 at 2271.466 kb on + strand, within Echvi_1928 at 2271.470 kb on - strand, within Echvi_1928 at 2271.472 kb on + strand, within Echvi_1928 at 2271.583 kb on + strand, within Echvi_1928 at 2271.612 kb on - strand, within Echvi_1928 at 2271.689 kb on + strand, within Echvi_1928 at 2271.809 kb on - strand, within Echvi_1928 at 2271.899 kb on + strand, within Echvi_1928 at 2271.905 kb on + strand, within Echvi_1928 at 2271.905 kb on + strand, within Echvi_1928 at 2271.964 kb on + strand, within Echvi_1928 at 2271.965 kb on - strand, within Echvi_1928 at 2272.016 kb on - strand, within Echvi_1928 at 2272.083 kb on + strand, within Echvi_1928 at 2272.084 kb on - strand, within Echvi_1928 at 2272.085 kb on + strand, within Echvi_1928 at 2272.170 kb on - strand, within Echvi_1928 at 2272.273 kb on - strand at 2272.333 kb on + strand at 2272.334 kb on - strand at 2272.358 kb on + strand at 2272.358 kb on + strand at 2272.362 kb on + strand at 2272.362 kb on + strand at 2272.372 kb on + strand at 2272.372 kb on + strand at 2272.383 kb on + strand at 2272.383 kb on + strand at 2272.384 kb on - strand at 2272.384 kb on - strand at 2272.384 kb on - strand at 2272.397 kb on - strand, within Echvi_1929 at 2272.418 kb on - strand, within Echvi_1929 at 2272.492 kb on + strand, within Echvi_1929 at 2272.496 kb on - strand, within Echvi_1929 at 2272.504 kb on + strand, within Echvi_1929 at 2272.504 kb on + strand, within Echvi_1929 at 2272.518 kb on + strand, within Echvi_1929 at 2272.556 kb on + strand at 2272.556 kb on + strand at 2272.556 kb on + strand at 2272.560 kb on + strand at 2272.615 kb on + strand at 2272.616 kb on - strand at 2272.616 kb on - strand at 2272.619 kb on - strand at 2272.715 kb on + strand, within Echvi_1930 at 2272.990 kb on - strand, within Echvi_1930 at 2272.993 kb on - strand, within Echvi_1930 at 2272.993 kb on - strand, within Echvi_1930 at 2273.049 kb on - strand, within Echvi_1930 at 2273.218 kb on - strand at 2273.225 kb on - strand at 2273.270 kb on + strand at 2273.270 kb on + strand at 2273.302 kb on + strand at 2273.325 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.05 mg/ml remove 2,269,837 - +0.4 2,269,851 - -0.3 2,269,879 + -1.3 2,269,912 - +0.0 2,269,912 - -0.7 2,269,912 - +0.2 2,269,916 + -1.7 2,269,916 + +1.5 2,269,928 - +0.3 2,269,944 + +0.4 2,269,949 + +1.1 2,269,949 + -0.2 2,269,950 - +0.3 2,270,126 - Echvi_1926 0.36 -0.3 2,270,152 + Echvi_1926 0.41 -2.0 2,270,152 + Echvi_1926 0.41 -0.3 2,270,153 - Echvi_1926 0.41 -0.2 2,270,153 - Echvi_1926 0.41 -1.0 2,270,153 - Echvi_1926 0.41 +1.4 2,270,153 - Echvi_1926 0.41 +0.3 2,270,153 - Echvi_1926 0.41 +0.4 2,270,270 + Echvi_1926 0.61 -0.5 2,270,271 - Echvi_1926 0.61 -0.3 2,270,271 - Echvi_1926 0.61 +1.0 2,270,368 + Echvi_1926 0.78 +1.1 2,270,368 + Echvi_1926 0.78 -1.0 2,270,368 + Echvi_1926 0.78 -0.4 2,270,369 - Echvi_1926 0.78 +0.5 2,270,369 - Echvi_1926 0.78 +0.1 2,270,369 - Echvi_1926 0.78 -0.2 2,270,374 - Echvi_1926 0.79 -0.4 2,270,375 + Echvi_1926 0.79 +0.3 2,270,375 + Echvi_1926 0.79 -1.0 2,270,375 + Echvi_1926 0.79 +0.2 2,270,375 + Echvi_1926 0.79 -0.2 2,270,376 - Echvi_1926 0.79 +0.5 2,270,376 - Echvi_1926 0.79 -0.0 2,270,376 - Echvi_1926 0.79 +1.6 2,270,381 + Echvi_1926 0.80 -0.3 2,270,381 + Echvi_1926 0.80 -0.0 2,270,382 - Echvi_1926 0.80 +0.8 2,270,382 - Echvi_1926 0.80 -0.3 2,270,388 - Echvi_1926 0.81 +0.9 2,270,447 - -0.0 2,270,458 + -0.3 2,270,459 - -0.5 2,270,459 - -1.8 2,270,473 + -1.3 2,270,475 + +0.4 2,270,476 - +0.2 2,270,476 - -0.5 2,270,503 - +0.2 2,270,503 - +0.3 2,270,520 + +0.0 2,270,521 - -0.1 2,270,563 + -0.2 2,270,699 + -0.4 2,270,700 - +0.7 2,270,785 + +0.0 2,270,827 + +0.1 2,270,841 - +0.3 2,271,051 - Echvi_1928 0.14 -0.8 2,271,168 + Echvi_1928 0.22 +0.8 2,271,219 + Echvi_1928 0.25 -0.9 2,271,221 + Echvi_1928 0.25 -0.2 2,271,326 - Echvi_1928 0.32 -0.5 2,271,351 - Echvi_1928 0.34 -0.1 2,271,351 - Echvi_1928 0.34 +0.1 2,271,355 + Echvi_1928 0.34 -0.5 2,271,405 + Echvi_1928 0.37 -1.9 2,271,405 + Echvi_1928 0.37 +2.2 2,271,405 + Echvi_1928 0.37 -0.2 2,271,405 + Echvi_1928 0.37 +0.7 2,271,406 - Echvi_1928 0.37 +0.9 2,271,407 + Echvi_1928 0.37 +0.7 2,271,408 - Echvi_1928 0.37 -0.7 2,271,408 - Echvi_1928 0.37 +0.2 2,271,409 + Echvi_1928 0.37 -0.9 2,271,409 + Echvi_1928 0.37 -0.7 2,271,409 + Echvi_1928 0.37 -0.0 2,271,440 - Echvi_1928 0.39 -0.1 2,271,464 - Echvi_1928 0.41 +1.0 2,271,466 + Echvi_1928 0.41 +1.2 2,271,470 - Echvi_1928 0.41 +2.4 2,271,472 + Echvi_1928 0.41 -0.0 2,271,583 + Echvi_1928 0.48 -1.0 2,271,612 - Echvi_1928 0.50 -0.6 2,271,689 + Echvi_1928 0.55 -0.3 2,271,809 - Echvi_1928 0.63 -0.4 2,271,899 + Echvi_1928 0.69 -1.0 2,271,905 + Echvi_1928 0.69 -1.0 2,271,905 + Echvi_1928 0.69 +1.0 2,271,964 + Echvi_1928 0.73 +0.2 2,271,965 - Echvi_1928 0.73 -0.7 2,272,016 - Echvi_1928 0.76 +0.3 2,272,083 + Echvi_1928 0.80 -0.2 2,272,084 - Echvi_1928 0.80 -0.7 2,272,085 + Echvi_1928 0.80 -0.6 2,272,170 - Echvi_1928 0.86 +0.8 2,272,273 - -1.3 2,272,333 + +0.3 2,272,334 - -0.1 2,272,358 + +0.5 2,272,358 + +0.9 2,272,362 + -1.0 2,272,362 + +0.5 2,272,372 + +0.3 2,272,372 + -1.4 2,272,383 + -1.4 2,272,383 + +0.7 2,272,384 - -1.3 2,272,384 - -0.1 2,272,384 - -0.4 2,272,397 - Echvi_1929 0.10 -1.1 2,272,418 - Echvi_1929 0.22 +0.3 2,272,492 + Echvi_1929 0.62 -0.8 2,272,496 - Echvi_1929 0.64 -0.6 2,272,504 + Echvi_1929 0.69 -1.1 2,272,504 + Echvi_1929 0.69 +0.1 2,272,518 + Echvi_1929 0.77 +1.0 2,272,556 + +0.2 2,272,556 + -0.1 2,272,556 + +0.5 2,272,560 + +1.3 2,272,615 + -1.6 2,272,616 - -0.3 2,272,616 - -0.4 2,272,619 - +0.5 2,272,715 + Echvi_1930 0.15 +2.2 2,272,990 - Echvi_1930 0.75 -0.7 2,272,993 - Echvi_1930 0.76 +0.1 2,272,993 - Echvi_1930 0.76 -0.6 2,273,049 - Echvi_1930 0.88 +0.3 2,273,218 - -1.7 2,273,225 - -0.6 2,273,270 + +0.2 2,273,270 + -0.7 2,273,302 + -0.4 2,273,325 + -0.3
Or see this region's nucleotide sequence