Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1165

Experiment: m.b. Thallium(I) acetate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1163 and Echvi_1164 overlap by 1 nucleotidesEchvi_1164 and Echvi_1165 are separated by 627 nucleotidesEchvi_1165 and Echvi_1166 are separated by 287 nucleotides Echvi_1163: Echvi_1163 - Endoglucanase, at 1,333,115 to 1,334,542 _1163 Echvi_1164: Echvi_1164 - hypothetical protein, at 1,334,542 to 1,334,685 _1164 Echvi_1165: Echvi_1165 - catalase/peroxidase HPI, at 1,335,313 to 1,337,547 _1165 Echvi_1166: Echvi_1166 - Aminopeptidase N, at 1,337,835 to 1,339,496 _1166 Position (kb) 1335 1336 1337 1338Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1334.319 kb on + strand, within Echvi_1163at 1334.378 kb on + strand, within Echvi_1163at 1334.378 kb on + strand, within Echvi_1163at 1334.379 kb on - strand, within Echvi_1163at 1334.381 kb on + strand, within Echvi_1163at 1334.381 kb on + strand, within Echvi_1163at 1334.433 kb on - strandat 1334.433 kb on - strandat 1334.433 kb on - strandat 1334.472 kb on + strandat 1334.473 kb on - strandat 1334.473 kb on - strandat 1334.485 kb on + strandat 1334.511 kb on + strandat 1334.518 kb on + strandat 1334.530 kb on + strandat 1334.530 kb on + strandat 1334.530 kb on + strandat 1334.531 kb on - strandat 1334.531 kb on - strandat 1334.531 kb on - strandat 1334.531 kb on - strandat 1334.537 kb on - strandat 1334.537 kb on - strandat 1334.540 kb on + strandat 1334.540 kb on + strandat 1334.540 kb on + strandat 1334.541 kb on - strandat 1334.541 kb on - strandat 1334.619 kb on + strand, within Echvi_1164at 1334.672 kb on - strandat 1334.672 kb on - strandat 1334.684 kb on - strandat 1334.687 kb on + strandat 1334.705 kb on + strandat 1334.706 kb on - strandat 1334.746 kb on + strandat 1334.747 kb on - strandat 1334.751 kb on + strandat 1334.755 kb on + strandat 1334.755 kb on + strandat 1334.756 kb on - strandat 1334.786 kb on + strandat 1334.787 kb on - strandat 1334.796 kb on + strandat 1334.797 kb on - strandat 1334.814 kb on + strandat 1334.946 kb on + strandat 1334.946 kb on + strandat 1334.946 kb on + strandat 1334.947 kb on - strandat 1334.947 kb on - strandat 1334.947 kb on - strandat 1334.948 kb on + strandat 1334.949 kb on - strandat 1334.959 kb on + strandat 1334.959 kb on + strandat 1334.961 kb on + strandat 1334.962 kb on - strandat 1334.986 kb on - strandat 1334.986 kb on - strandat 1334.991 kb on + strandat 1334.992 kb on - strandat 1334.992 kb on - strandat 1335.074 kb on + strandat 1335.074 kb on + strandat 1335.074 kb on + strandat 1335.075 kb on - strandat 1335.089 kb on + strandat 1335.090 kb on - strandat 1335.090 kb on - strandat 1335.095 kb on + strandat 1335.095 kb on + strandat 1335.095 kb on + strandat 1335.096 kb on - strandat 1335.107 kb on - strandat 1335.107 kb on - strandat 1335.107 kb on - strandat 1335.139 kb on + strandat 1335.154 kb on - strandat 1335.167 kb on - strandat 1335.167 kb on - strandat 1335.167 kb on - strandat 1335.167 kb on - strandat 1335.175 kb on - strandat 1335.187 kb on - strandat 1335.187 kb on - strandat 1335.187 kb on - strandat 1335.187 kb on - strandat 1335.189 kb on - strandat 1335.189 kb on - strandat 1335.189 kb on - strandat 1335.189 kb on - strandat 1335.189 kb on - strandat 1335.189 kb on - strandat 1335.189 kb on - strandat 1335.189 kb on - strandat 1335.189 kb on - strandat 1335.189 kb on - strandat 1335.189 kb on - strandat 1335.200 kb on - strandat 1335.202 kb on - strandat 1335.202 kb on - strandat 1335.202 kb on - strandat 1335.202 kb on - strandat 1335.220 kb on + strandat 1335.220 kb on + strandat 1335.220 kb on + strandat 1335.220 kb on + strandat 1335.223 kb on - strandat 1335.242 kb on + strandat 1335.324 kb on + strandat 1335.325 kb on - strandat 1335.429 kb on - strandat 1335.429 kb on - strandat 1335.460 kb on - strandat 1335.511 kb on + strandat 1335.538 kb on + strand, within Echvi_1165at 1335.538 kb on + strand, within Echvi_1165at 1335.613 kb on + strand, within Echvi_1165at 1335.614 kb on - strand, within Echvi_1165at 1335.658 kb on + strand, within Echvi_1165at 1335.664 kb on - strand, within Echvi_1165at 1335.761 kb on + strand, within Echvi_1165at 1335.889 kb on - strand, within Echvi_1165at 1335.889 kb on - strand, within Echvi_1165at 1335.912 kb on - strand, within Echvi_1165at 1336.009 kb on + strand, within Echvi_1165at 1336.009 kb on + strand, within Echvi_1165at 1336.010 kb on - strand, within Echvi_1165at 1336.010 kb on - strand, within Echvi_1165at 1336.010 kb on - strand, within Echvi_1165at 1336.010 kb on - strand, within Echvi_1165at 1336.010 kb on - strand, within Echvi_1165at 1336.010 kb on - strand, within Echvi_1165at 1336.010 kb on - strand, within Echvi_1165at 1336.086 kb on + strand, within Echvi_1165at 1336.087 kb on - strand, within Echvi_1165at 1336.212 kb on - strand, within Echvi_1165at 1336.212 kb on - strand, within Echvi_1165at 1336.233 kb on + strand, within Echvi_1165at 1336.263 kb on + strand, within Echvi_1165at 1336.264 kb on - strand, within Echvi_1165at 1336.264 kb on - strand, within Echvi_1165at 1336.343 kb on - strand, within Echvi_1165at 1336.359 kb on + strand, within Echvi_1165at 1336.470 kb on - strand, within Echvi_1165at 1336.470 kb on - strand, within Echvi_1165at 1336.516 kb on + strand, within Echvi_1165at 1336.517 kb on - strand, within Echvi_1165at 1336.517 kb on - strand, within Echvi_1165at 1336.561 kb on + strand, within Echvi_1165at 1336.561 kb on + strand, within Echvi_1165at 1336.561 kb on + strand, within Echvi_1165at 1336.561 kb on + strand, within Echvi_1165at 1336.562 kb on - strand, within Echvi_1165at 1336.671 kb on - strand, within Echvi_1165at 1336.671 kb on - strand, within Echvi_1165at 1336.673 kb on + strand, within Echvi_1165at 1336.673 kb on + strand, within Echvi_1165at 1336.674 kb on - strand, within Echvi_1165at 1336.688 kb on + strand, within Echvi_1165at 1336.688 kb on + strand, within Echvi_1165at 1336.689 kb on - strand, within Echvi_1165at 1336.689 kb on - strand, within Echvi_1165at 1336.892 kb on + strand, within Echvi_1165at 1336.948 kb on - strand, within Echvi_1165at 1337.007 kb on + strand, within Echvi_1165at 1337.008 kb on - strand, within Echvi_1165at 1337.011 kb on - strand, within Echvi_1165at 1337.022 kb on + strand, within Echvi_1165at 1337.023 kb on - strand, within Echvi_1165at 1337.043 kb on + strand, within Echvi_1165at 1337.043 kb on + strand, within Echvi_1165at 1337.044 kb on - strand, within Echvi_1165at 1337.127 kb on + strand, within Echvi_1165at 1337.127 kb on + strand, within Echvi_1165at 1337.128 kb on - strand, within Echvi_1165at 1337.233 kb on + strand, within Echvi_1165at 1337.234 kb on - strand, within Echvi_1165at 1337.255 kb on + strand, within Echvi_1165at 1337.256 kb on - strand, within Echvi_1165at 1337.260 kb on - strand, within Echvi_1165at 1337.265 kb on + strand, within Echvi_1165at 1337.265 kb on + strand, within Echvi_1165at 1337.266 kb on - strand, within Echvi_1165at 1337.266 kb on - strand, within Echvi_1165at 1337.266 kb on - strand, within Echvi_1165at 1337.534 kb on - strandat 1337.545 kb on + strandat 1337.546 kb on - strandat 1337.566 kb on + strandat 1337.566 kb on + strandat 1337.566 kb on + strandat 1337.567 kb on - strandat 1337.567 kb on - strandat 1337.567 kb on - strandat 1337.624 kb on - strandat 1337.684 kb on + strandat 1337.764 kb on + strandat 1337.765 kb on - strandat 1337.779 kb on + strandat 1337.784 kb on + strandat 1337.785 kb on - strandat 1337.789 kb on + strandat 1337.797 kb on - strandat 1337.797 kb on - strandat 1337.802 kb on - strandat 1337.809 kb on + strandat 1337.809 kb on + strandat 1337.809 kb on + strandat 1337.810 kb on - strandat 1337.810 kb on - strandat 1337.810 kb on - strandat 1337.810 kb on - strandat 1337.810 kb on - strandat 1337.814 kb on + strandat 1337.827 kb on + strandat 1337.828 kb on - strandat 1337.831 kb on + strandat 1337.831 kb on + strandat 1337.879 kb on + strandat 1337.903 kb on - strandat 1337.924 kb on + strandat 1337.924 kb on + strandat 1337.953 kb on + strandat 1337.989 kb on - strandat 1337.989 kb on - strandat 1337.991 kb on - strandat 1337.991 kb on - strandat 1338.041 kb on + strand, within Echvi_1166at 1338.051 kb on + strand, within Echvi_1166at 1338.052 kb on - strand, within Echvi_1166at 1338.052 kb on - strand, within Echvi_1166at 1338.052 kb on - strand, within Echvi_1166at 1338.053 kb on + strand, within Echvi_1166at 1338.054 kb on - strand, within Echvi_1166at 1338.171 kb on - strand, within Echvi_1166at 1338.171 kb on - strand, within Echvi_1166at 1338.216 kb on - strand, within Echvi_1166at 1338.216 kb on - strand, within Echvi_1166at 1338.275 kb on + strand, within Echvi_1166at 1338.275 kb on + strand, within Echvi_1166at 1338.276 kb on - strand, within Echvi_1166at 1338.276 kb on - strand, within Echvi_1166at 1338.276 kb on - strand, within Echvi_1166at 1338.391 kb on + strand, within Echvi_1166at 1338.391 kb on + strand, within Echvi_1166at 1338.486 kb on + strand, within Echvi_1166at 1338.520 kb on - strand, within Echvi_1166at 1338.546 kb on + strand, within Echvi_1166at 1338.546 kb on + strand, within Echvi_1166at 1338.546 kb on + strand, within Echvi_1166at 1338.546 kb on + strand, within Echvi_1166at 1338.546 kb on + strand, within Echvi_1166at 1338.546 kb on + strand, within Echvi_1166at 1338.547 kb on - strand, within Echvi_1166at 1338.547 kb on - strand, within Echvi_1166at 1338.547 kb on - strand, within Echvi_1166at 1338.547 kb on - strand, within Echvi_1166at 1338.547 kb on - strand, within Echvi_1166

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.05 mg/ml
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1,334,319 + Echvi_1163 0.84 +0.8
1,334,378 + Echvi_1163 0.88 -1.1
1,334,378 + Echvi_1163 0.88 -0.4
1,334,379 - Echvi_1163 0.89 -1.2
1,334,381 + Echvi_1163 0.89 +0.3
1,334,381 + Echvi_1163 0.89 -1.5
1,334,433 - +0.1
1,334,433 - +0.5
1,334,433 - -2.3
1,334,472 + +0.2
1,334,473 - -0.8
1,334,473 - -0.6
1,334,485 + -0.5
1,334,511 + -1.3
1,334,518 + -0.3
1,334,530 + -1.1
1,334,530 + -0.4
1,334,530 + -0.7
1,334,531 - +0.4
1,334,531 - -1.3
1,334,531 - -2.2
1,334,531 - -2.2
1,334,537 - +0.5
1,334,537 - +0.9
1,334,540 + -0.1
1,334,540 + -0.1
1,334,540 + -2.1
1,334,541 - -0.2
1,334,541 - -0.7
1,334,619 + Echvi_1164 0.53 +0.6
1,334,672 - +0.3
1,334,672 - -2.5
1,334,684 - -0.1
1,334,687 + -0.6
1,334,705 + +0.9
1,334,706 - -0.9
1,334,746 + +0.5
1,334,747 - -1.2
1,334,751 + +1.8
1,334,755 + -0.0
1,334,755 + +0.5
1,334,756 - +0.6
1,334,786 + -0.9
1,334,787 - +0.6
1,334,796 + +0.9
1,334,797 - +0.1
1,334,814 + -1.8
1,334,946 + -0.9
1,334,946 + -0.9
1,334,946 + -0.0
1,334,947 - -1.6
1,334,947 - -2.2
1,334,947 - +0.1
1,334,948 + +0.8
1,334,949 - +4.1
1,334,959 + -0.1
1,334,959 + +0.2
1,334,961 + +0.6
1,334,962 - -0.1
1,334,986 - +0.5
1,334,986 - -0.5
1,334,991 + +0.2
1,334,992 - -0.3
1,334,992 - +0.2
1,335,074 + -0.8
1,335,074 + +1.4
1,335,074 + -0.5
1,335,075 - -0.8
1,335,089 + +1.5
1,335,090 - +0.5
1,335,090 - -0.8
1,335,095 + -0.6
1,335,095 + -0.8
1,335,095 + -0.3
1,335,096 - -0.1
1,335,107 - -1.7
1,335,107 - -0.5
1,335,107 - +0.5
1,335,139 + +0.4
1,335,154 - -1.0
1,335,167 - -1.6
1,335,167 - -1.3
1,335,167 - -0.9
1,335,167 - -0.9
1,335,175 - +0.7
1,335,187 - +0.1
1,335,187 - +0.4
1,335,187 - -0.5
1,335,187 - +2.1
1,335,189 - +0.3
1,335,189 - +1.3
1,335,189 - -0.0
1,335,189 - +0.0
1,335,189 - -0.1
1,335,189 - -1.6
1,335,189 - -0.0
1,335,189 - -0.0
1,335,189 - +1.7
1,335,189 - +0.2
1,335,189 - -0.8
1,335,200 - +0.1
1,335,202 - -0.1
1,335,202 - +0.2
1,335,202 - +0.2
1,335,202 - +0.7
1,335,220 + +1.3
1,335,220 + -2.1
1,335,220 + +0.1
1,335,220 + +2.1
1,335,223 - +1.0
1,335,242 + -0.9
1,335,324 + -1.3
1,335,325 - +0.4
1,335,429 - +0.2
1,335,429 - -0.1
1,335,460 - +0.3
1,335,511 + -1.1
1,335,538 + Echvi_1165 0.10 +1.2
1,335,538 + Echvi_1165 0.10 -1.4
1,335,613 + Echvi_1165 0.13 -0.3
1,335,614 - Echvi_1165 0.13 -0.6
1,335,658 + Echvi_1165 0.15 -0.0
1,335,664 - Echvi_1165 0.16 +1.2
1,335,761 + Echvi_1165 0.20 +1.8
1,335,889 - Echvi_1165 0.26 +1.6
1,335,889 - Echvi_1165 0.26 -1.3
1,335,912 - Echvi_1165 0.27 +0.0
1,336,009 + Echvi_1165 0.31 -0.1
1,336,009 + Echvi_1165 0.31 -0.4
1,336,010 - Echvi_1165 0.31 +3.0
1,336,010 - Echvi_1165 0.31 +0.5
1,336,010 - Echvi_1165 0.31 -0.6
1,336,010 - Echvi_1165 0.31 -0.7
1,336,010 - Echvi_1165 0.31 -0.4
1,336,010 - Echvi_1165 0.31 +0.0
1,336,010 - Echvi_1165 0.31 -0.6
1,336,086 + Echvi_1165 0.35 -0.6
1,336,087 - Echvi_1165 0.35 +0.7
1,336,212 - Echvi_1165 0.40 +0.8
1,336,212 - Echvi_1165 0.40 +1.0
1,336,233 + Echvi_1165 0.41 -0.9
1,336,263 + Echvi_1165 0.43 -0.7
1,336,264 - Echvi_1165 0.43 -1.4
1,336,264 - Echvi_1165 0.43 +0.5
1,336,343 - Echvi_1165 0.46 +0.6
1,336,359 + Echvi_1165 0.47 -0.1
1,336,470 - Echvi_1165 0.52 -0.5
1,336,470 - Echvi_1165 0.52 -0.2
1,336,516 + Echvi_1165 0.54 +0.4
1,336,517 - Echvi_1165 0.54 -0.1
1,336,517 - Echvi_1165 0.54 -0.6
1,336,561 + Echvi_1165 0.56 -0.6
1,336,561 + Echvi_1165 0.56 +0.4
1,336,561 + Echvi_1165 0.56 +0.1
1,336,561 + Echvi_1165 0.56 -0.3
1,336,562 - Echvi_1165 0.56 -0.1
1,336,671 - Echvi_1165 0.61 +2.1
1,336,671 - Echvi_1165 0.61 -0.6
1,336,673 + Echvi_1165 0.61 -0.2
1,336,673 + Echvi_1165 0.61 -1.2
1,336,674 - Echvi_1165 0.61 +1.0
1,336,688 + Echvi_1165 0.62 +0.3
1,336,688 + Echvi_1165 0.62 -1.7
1,336,689 - Echvi_1165 0.62 -0.6
1,336,689 - Echvi_1165 0.62 -1.1
1,336,892 + Echvi_1165 0.71 -1.1
1,336,948 - Echvi_1165 0.73 -0.7
1,337,007 + Echvi_1165 0.76 -0.2
1,337,008 - Echvi_1165 0.76 -0.1
1,337,011 - Echvi_1165 0.76 -0.2
1,337,022 + Echvi_1165 0.76 -1.2
1,337,023 - Echvi_1165 0.77 +0.4
1,337,043 + Echvi_1165 0.77 -2.0
1,337,043 + Echvi_1165 0.77 +1.2
1,337,044 - Echvi_1165 0.77 -0.9
1,337,127 + Echvi_1165 0.81 -0.9
1,337,127 + Echvi_1165 0.81 -0.9
1,337,128 - Echvi_1165 0.81 +1.2
1,337,233 + Echvi_1165 0.86 -0.2
1,337,234 - Echvi_1165 0.86 +0.7
1,337,255 + Echvi_1165 0.87 -0.5
1,337,256 - Echvi_1165 0.87 +0.4
1,337,260 - Echvi_1165 0.87 -0.1
1,337,265 + Echvi_1165 0.87 -0.3
1,337,265 + Echvi_1165 0.87 -0.2
1,337,266 - Echvi_1165 0.87 +0.2
1,337,266 - Echvi_1165 0.87 +0.2
1,337,266 - Echvi_1165 0.87 +0.5
1,337,534 - +0.3
1,337,545 + +0.9
1,337,546 - +1.0
1,337,566 + -1.4
1,337,566 + -0.4
1,337,566 + +0.0
1,337,567 - -1.7
1,337,567 - +0.1
1,337,567 - +1.1
1,337,624 - -0.6
1,337,684 + -0.6
1,337,764 + -0.6
1,337,765 - +0.0
1,337,779 + -0.4
1,337,784 + +0.2
1,337,785 - -0.6
1,337,789 + -0.2
1,337,797 - -1.2
1,337,797 - +0.8
1,337,802 - +0.4
1,337,809 + -0.4
1,337,809 + -1.8
1,337,809 + -0.5
1,337,810 - -1.5
1,337,810 - -0.3
1,337,810 - -0.2
1,337,810 - -0.7
1,337,810 - -0.8
1,337,814 + +0.4
1,337,827 + -0.3
1,337,828 - -0.8
1,337,831 + -0.4
1,337,831 + -0.3
1,337,879 + +0.3
1,337,903 - +1.3
1,337,924 + -0.0
1,337,924 + -0.9
1,337,953 + +0.0
1,337,989 - -0.9
1,337,989 - -0.4
1,337,991 - -0.6
1,337,991 - -1.1
1,338,041 + Echvi_1166 0.12 +0.1
1,338,051 + Echvi_1166 0.13 +0.8
1,338,052 - Echvi_1166 0.13 +0.1
1,338,052 - Echvi_1166 0.13 -0.5
1,338,052 - Echvi_1166 0.13 -1.9
1,338,053 + Echvi_1166 0.13 +0.0
1,338,054 - Echvi_1166 0.13 -0.2
1,338,171 - Echvi_1166 0.20 +0.5
1,338,171 - Echvi_1166 0.20 -0.3
1,338,216 - Echvi_1166 0.23 +0.4
1,338,216 - Echvi_1166 0.23 -1.3
1,338,275 + Echvi_1166 0.26 -0.5
1,338,275 + Echvi_1166 0.26 -0.5
1,338,276 - Echvi_1166 0.27 +1.3
1,338,276 - Echvi_1166 0.27 +1.4
1,338,276 - Echvi_1166 0.27 -0.5
1,338,391 + Echvi_1166 0.33 -0.7
1,338,391 + Echvi_1166 0.33 +0.2
1,338,486 + Echvi_1166 0.39 -0.2
1,338,520 - Echvi_1166 0.41 -0.6
1,338,546 + Echvi_1166 0.43 +0.8
1,338,546 + Echvi_1166 0.43 -1.5
1,338,546 + Echvi_1166 0.43 -0.9
1,338,546 + Echvi_1166 0.43 +0.4
1,338,546 + Echvi_1166 0.43 -1.1
1,338,546 + Echvi_1166 0.43 -0.5
1,338,547 - Echvi_1166 0.43 -0.6
1,338,547 - Echvi_1166 0.43 +1.0
1,338,547 - Echvi_1166 0.43 +1.1
1,338,547 - Echvi_1166 0.43 +0.5
1,338,547 - Echvi_1166 0.43 -0.3

Or see this region's nucleotide sequence