Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0198

Experiment: m.b. Thallium(I) acetate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0196 and Echvi_0197 are separated by 13 nucleotidesEchvi_0197 and Echvi_0198 are separated by 56 nucleotidesEchvi_0198 and Echvi_0199 are separated by 74 nucleotidesEchvi_0199 and Echvi_0200 are separated by 58 nucleotides Echvi_0196: Echvi_0196 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 212,305 to 213,462 _0196 Echvi_0197: Echvi_0197 - hypothetical protein, at 213,476 to 213,595 _0197 Echvi_0198: Echvi_0198 - Coenzyme F390 synthetase, at 213,652 to 214,656 _0198 Echvi_0199: Echvi_0199 - hypothetical protein, at 214,731 to 215,405 _0199 Echvi_0200: Echvi_0200 - Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit, at 215,464 to 217,878 _0200 Position (kb) 213 214 215Strain fitness (log2 ratio) -2 -1 0 1 2at 212.740 kb on - strand, within Echvi_0196at 212.800 kb on - strand, within Echvi_0196at 212.877 kb on + strand, within Echvi_0196at 212.878 kb on - strand, within Echvi_0196at 213.056 kb on + strand, within Echvi_0196at 213.299 kb on - strand, within Echvi_0196at 213.299 kb on - strand, within Echvi_0196at 213.406 kb on - strandat 213.485 kb on + strandat 213.485 kb on + strandat 213.513 kb on + strand, within Echvi_0197at 213.574 kb on + strand, within Echvi_0197at 213.577 kb on + strand, within Echvi_0197at 213.599 kb on - strandat 213.630 kb on + strandat 213.630 kb on + strandat 213.630 kb on + strandat 213.631 kb on - strandat 213.633 kb on + strandat 213.634 kb on - strandat 213.645 kb on + strandat 213.654 kb on - strandat 213.756 kb on + strand, within Echvi_0198at 213.790 kb on + strand, within Echvi_0198at 213.795 kb on + strand, within Echvi_0198at 213.795 kb on + strand, within Echvi_0198at 213.798 kb on + strand, within Echvi_0198at 213.879 kb on - strand, within Echvi_0198at 213.900 kb on - strand, within Echvi_0198at 214.039 kb on + strand, within Echvi_0198at 214.175 kb on + strand, within Echvi_0198at 214.221 kb on + strand, within Echvi_0198at 214.268 kb on + strand, within Echvi_0198at 214.313 kb on + strand, within Echvi_0198at 214.313 kb on + strand, within Echvi_0198at 214.349 kb on + strand, within Echvi_0198at 214.405 kb on - strand, within Echvi_0198at 214.462 kb on - strand, within Echvi_0198at 214.495 kb on + strand, within Echvi_0198at 214.547 kb on + strand, within Echvi_0198at 214.548 kb on - strand, within Echvi_0198at 214.548 kb on - strand, within Echvi_0198at 214.554 kb on + strand, within Echvi_0198at 214.624 kb on + strandat 214.625 kb on - strandat 214.625 kb on - strandat 214.663 kb on - strandat 214.669 kb on + strandat 214.669 kb on + strandat 214.670 kb on - strandat 214.670 kb on - strandat 214.670 kb on - strandat 214.670 kb on - strandat 214.670 kb on - strandat 214.672 kb on - strandat 214.707 kb on - strandat 214.714 kb on + strandat 214.714 kb on + strandat 214.715 kb on - strandat 214.718 kb on + strandat 214.719 kb on - strandat 214.719 kb on - strandat 214.746 kb on + strandat 214.747 kb on - strandat 214.747 kb on - strandat 214.747 kb on - strandat 214.747 kb on - strandat 214.752 kb on + strandat 214.752 kb on + strandat 214.752 kb on + strandat 214.752 kb on + strandat 214.753 kb on - strandat 214.753 kb on - strandat 214.753 kb on - strandat 214.753 kb on - strandat 214.753 kb on - strandat 214.753 kb on - strandat 214.754 kb on + strandat 214.754 kb on + strandat 214.754 kb on + strandat 214.755 kb on - strandat 214.755 kb on - strandat 214.789 kb on + strandat 214.830 kb on + strand, within Echvi_0199at 214.830 kb on + strand, within Echvi_0199at 214.831 kb on - strand, within Echvi_0199at 214.846 kb on - strand, within Echvi_0199at 214.855 kb on + strand, within Echvi_0199at 214.855 kb on + strand, within Echvi_0199at 214.882 kb on + strand, within Echvi_0199at 214.882 kb on + strand, within Echvi_0199at 214.882 kb on + strand, within Echvi_0199at 214.883 kb on - strand, within Echvi_0199at 214.883 kb on - strand, within Echvi_0199at 214.883 kb on - strand, within Echvi_0199at 214.889 kb on - strand, within Echvi_0199at 214.947 kb on + strand, within Echvi_0199at 214.948 kb on - strand, within Echvi_0199at 214.986 kb on + strand, within Echvi_0199at 214.987 kb on - strand, within Echvi_0199at 214.987 kb on - strand, within Echvi_0199at 214.988 kb on + strand, within Echvi_0199at 214.988 kb on + strand, within Echvi_0199at 214.988 kb on + strand, within Echvi_0199at 215.025 kb on + strand, within Echvi_0199at 215.025 kb on + strand, within Echvi_0199at 215.025 kb on + strand, within Echvi_0199at 215.026 kb on - strand, within Echvi_0199at 215.054 kb on + strand, within Echvi_0199at 215.054 kb on + strand, within Echvi_0199at 215.054 kb on + strand, within Echvi_0199at 215.054 kb on + strand, within Echvi_0199at 215.055 kb on - strand, within Echvi_0199at 215.100 kb on - strand, within Echvi_0199at 215.109 kb on + strand, within Echvi_0199at 215.112 kb on + strand, within Echvi_0199at 215.112 kb on + strand, within Echvi_0199at 215.113 kb on - strand, within Echvi_0199at 215.113 kb on - strand, within Echvi_0199at 215.113 kb on - strand, within Echvi_0199at 215.161 kb on - strand, within Echvi_0199at 215.184 kb on + strand, within Echvi_0199at 215.187 kb on + strand, within Echvi_0199at 215.187 kb on + strand, within Echvi_0199at 215.187 kb on + strand, within Echvi_0199at 215.188 kb on - strand, within Echvi_0199at 215.245 kb on + strand, within Echvi_0199at 215.245 kb on + strand, within Echvi_0199at 215.262 kb on + strand, within Echvi_0199at 215.306 kb on + strand, within Echvi_0199at 215.306 kb on + strand, within Echvi_0199at 215.345 kb on + strandat 215.355 kb on - strandat 215.355 kb on - strandat 215.360 kb on + strandat 215.459 kb on + strandat 215.459 kb on + strandat 215.460 kb on - strandat 215.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.05 mg/ml
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212,740 - Echvi_0196 0.38 +0.6
212,800 - Echvi_0196 0.43 +0.9
212,877 + Echvi_0196 0.49 -0.7
212,878 - Echvi_0196 0.49 +0.2
213,056 + Echvi_0196 0.65 -0.8
213,299 - Echvi_0196 0.86 +0.2
213,299 - Echvi_0196 0.86 +0.7
213,406 - -0.2
213,485 + +1.4
213,485 + -0.1
213,513 + Echvi_0197 0.31 +0.2
213,574 + Echvi_0197 0.82 -0.3
213,577 + Echvi_0197 0.84 -0.9
213,599 - +0.7
213,630 + -0.4
213,630 + +0.8
213,630 + -1.2
213,631 - -0.0
213,633 + -0.3
213,634 - +0.2
213,645 + -0.2
213,654 - -0.0
213,756 + Echvi_0198 0.10 -0.4
213,790 + Echvi_0198 0.14 -0.1
213,795 + Echvi_0198 0.14 +1.7
213,795 + Echvi_0198 0.14 -1.4
213,798 + Echvi_0198 0.15 -0.9
213,879 - Echvi_0198 0.23 -2.5
213,900 - Echvi_0198 0.25 -1.2
214,039 + Echvi_0198 0.39 +0.2
214,175 + Echvi_0198 0.52 +0.1
214,221 + Echvi_0198 0.57 +0.3
214,268 + Echvi_0198 0.61 -0.7
214,313 + Echvi_0198 0.66 +0.1
214,313 + Echvi_0198 0.66 -0.5
214,349 + Echvi_0198 0.69 +0.4
214,405 - Echvi_0198 0.75 -0.9
214,462 - Echvi_0198 0.81 -2.7
214,495 + Echvi_0198 0.84 -1.9
214,547 + Echvi_0198 0.89 -0.2
214,548 - Echvi_0198 0.89 -0.8
214,548 - Echvi_0198 0.89 -1.2
214,554 + Echvi_0198 0.90 -0.5
214,624 + -0.6
214,625 - +0.1
214,625 - +1.2
214,663 - +0.3
214,669 + +1.1
214,669 + +0.7
214,670 - -0.2
214,670 - -0.3
214,670 - -0.8
214,670 - +0.5
214,670 - -1.2
214,672 - +0.1
214,707 - +0.2
214,714 + +0.6
214,714 + -0.8
214,715 - -0.3
214,718 + +1.6
214,719 - -0.0
214,719 - -0.4
214,746 + +0.9
214,747 - -0.0
214,747 - +0.1
214,747 - +0.5
214,747 - -0.6
214,752 + +1.0
214,752 + +0.7
214,752 + -0.1
214,752 + -0.0
214,753 - +0.7
214,753 - +0.9
214,753 - -0.3
214,753 - -0.3
214,753 - +0.1
214,753 - -0.5
214,754 + -0.8
214,754 + +2.7
214,754 + +0.1
214,755 - +0.3
214,755 - -0.3
214,789 + -0.7
214,830 + Echvi_0199 0.15 +0.5
214,830 + Echvi_0199 0.15 -0.5
214,831 - Echvi_0199 0.15 +0.6
214,846 - Echvi_0199 0.17 +1.2
214,855 + Echvi_0199 0.18 -0.1
214,855 + Echvi_0199 0.18 -1.2
214,882 + Echvi_0199 0.22 -0.6
214,882 + Echvi_0199 0.22 +0.3
214,882 + Echvi_0199 0.22 +0.3
214,883 - Echvi_0199 0.23 +0.6
214,883 - Echvi_0199 0.23 -0.2
214,883 - Echvi_0199 0.23 +1.0
214,889 - Echvi_0199 0.23 -0.0
214,947 + Echvi_0199 0.32 -0.4
214,948 - Echvi_0199 0.32 +0.7
214,986 + Echvi_0199 0.38 +1.0
214,987 - Echvi_0199 0.38 -0.7
214,987 - Echvi_0199 0.38 -0.2
214,988 + Echvi_0199 0.38 +1.6
214,988 + Echvi_0199 0.38 -0.3
214,988 + Echvi_0199 0.38 -0.4
215,025 + Echvi_0199 0.44 -0.2
215,025 + Echvi_0199 0.44 -0.5
215,025 + Echvi_0199 0.44 -0.3
215,026 - Echvi_0199 0.44 +0.5
215,054 + Echvi_0199 0.48 -0.5
215,054 + Echvi_0199 0.48 +1.6
215,054 + Echvi_0199 0.48 -1.0
215,054 + Echvi_0199 0.48 +0.0
215,055 - Echvi_0199 0.48 +0.1
215,100 - Echvi_0199 0.55 +0.5
215,109 + Echvi_0199 0.56 +0.1
215,112 + Echvi_0199 0.56 -0.6
215,112 + Echvi_0199 0.56 +0.0
215,113 - Echvi_0199 0.57 -0.2
215,113 - Echvi_0199 0.57 -0.0
215,113 - Echvi_0199 0.57 -0.7
215,161 - Echvi_0199 0.64 -0.8
215,184 + Echvi_0199 0.67 -0.2
215,187 + Echvi_0199 0.68 -0.7
215,187 + Echvi_0199 0.68 -0.3
215,187 + Echvi_0199 0.68 +0.3
215,188 - Echvi_0199 0.68 +0.4
215,245 + Echvi_0199 0.76 +1.4
215,245 + Echvi_0199 0.76 -0.2
215,262 + Echvi_0199 0.79 +0.3
215,306 + Echvi_0199 0.85 -0.1
215,306 + Echvi_0199 0.85 +1.2
215,345 + -0.3
215,355 - -0.1
215,355 - +0.4
215,360 + +0.0
215,459 + +1.1
215,459 + -0.2
215,460 - -0.4
215,460 - -0.5

Or see this region's nucleotide sequence