Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4293 and EX28DRAFT_4294 are separated by 203 nucleotides EX28DRAFT_4294 and EX28DRAFT_4295 are separated by 136 nucleotides
EX28DRAFT_4293: EX28DRAFT_4293 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 96,151 to 97,245
_4293
EX28DRAFT_4294: EX28DRAFT_4294 - 4-aminobutyrate aminotransferase, prokaryotic type, at 97,449 to 98,714
_4294
EX28DRAFT_4295: EX28DRAFT_4295 - alternative sigma factor RpoH, at 98,851 to 99,708
_4295
Position (kb) 97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2 at 96.590 kb on + strand, within EX28DRAFT_4293 at 96.738 kb on - strand, within EX28DRAFT_4293 at 96.795 kb on - strand, within EX28DRAFT_4293 at 96.907 kb on - strand, within EX28DRAFT_4293 at 96.920 kb on + strand, within EX28DRAFT_4293 at 96.920 kb on + strand, within EX28DRAFT_4293 at 96.921 kb on - strand, within EX28DRAFT_4293 at 96.971 kb on + strand, within EX28DRAFT_4293 at 96.971 kb on + strand, within EX28DRAFT_4293 at 96.971 kb on + strand, within EX28DRAFT_4293 at 96.972 kb on - strand, within EX28DRAFT_4293 at 96.972 kb on - strand, within EX28DRAFT_4293 at 97.041 kb on - strand, within EX28DRAFT_4293 at 97.080 kb on + strand, within EX28DRAFT_4293 at 97.080 kb on + strand, within EX28DRAFT_4293 at 97.087 kb on - strand, within EX28DRAFT_4293 at 97.215 kb on + strand at 97.216 kb on - strand at 97.279 kb on + strand at 97.280 kb on - strand at 97.407 kb on + strand at 97.409 kb on + strand at 97.409 kb on + strand at 97.409 kb on + strand at 97.409 kb on + strand at 97.410 kb on - strand at 97.410 kb on - strand at 97.415 kb on - strand at 97.451 kb on - strand at 97.473 kb on - strand at 97.687 kb on + strand, within EX28DRAFT_4294 at 97.689 kb on - strand, within EX28DRAFT_4294 at 97.825 kb on + strand, within EX28DRAFT_4294 at 97.825 kb on + strand, within EX28DRAFT_4294 at 98.055 kb on - strand, within EX28DRAFT_4294 at 98.145 kb on - strand, within EX28DRAFT_4294 at 98.218 kb on + strand, within EX28DRAFT_4294 at 98.218 kb on + strand, within EX28DRAFT_4294 at 98.254 kb on + strand, within EX28DRAFT_4294 at 98.289 kb on - strand, within EX28DRAFT_4294 at 98.461 kb on + strand, within EX28DRAFT_4294 at 98.462 kb on - strand, within EX28DRAFT_4294 at 98.462 kb on - strand, within EX28DRAFT_4294 at 98.470 kb on + strand, within EX28DRAFT_4294 at 98.470 kb on + strand, within EX28DRAFT_4294 at 98.493 kb on - strand, within EX28DRAFT_4294 at 98.590 kb on + strand at 98.641 kb on + strand at 98.641 kb on + strand at 98.641 kb on + strand at 98.648 kb on + strand at 98.649 kb on - strand at 98.753 kb on + strand at 98.754 kb on - strand at 98.754 kb on - strand at 98.754 kb on - strand at 98.852 kb on + strand at 98.852 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 96,590 + EX28DRAFT_4293 0.40 +0.5 96,738 - EX28DRAFT_4293 0.54 +0.2 96,795 - EX28DRAFT_4293 0.59 +0.5 96,907 - EX28DRAFT_4293 0.69 +0.2 96,920 + EX28DRAFT_4293 0.70 -0.9 96,920 + EX28DRAFT_4293 0.70 -0.4 96,921 - EX28DRAFT_4293 0.70 +0.7 96,971 + EX28DRAFT_4293 0.75 -2.6 96,971 + EX28DRAFT_4293 0.75 +0.2 96,971 + EX28DRAFT_4293 0.75 +0.4 96,972 - EX28DRAFT_4293 0.75 -0.0 96,972 - EX28DRAFT_4293 0.75 -0.1 97,041 - EX28DRAFT_4293 0.81 +0.1 97,080 + EX28DRAFT_4293 0.85 -0.0 97,080 + EX28DRAFT_4293 0.85 -0.5 97,087 - EX28DRAFT_4293 0.85 -0.2 97,215 + -0.4 97,216 - +0.4 97,279 + +0.2 97,280 - -0.4 97,407 + -0.2 97,409 + +1.2 97,409 + +0.0 97,409 + -0.3 97,409 + +0.2 97,410 - +0.3 97,410 - -0.1 97,415 - +0.2 97,451 - +0.2 97,473 - -1.1 97,687 + EX28DRAFT_4294 0.19 -0.1 97,689 - EX28DRAFT_4294 0.19 -0.1 97,825 + EX28DRAFT_4294 0.30 +0.1 97,825 + EX28DRAFT_4294 0.30 -0.3 98,055 - EX28DRAFT_4294 0.48 -0.6 98,145 - EX28DRAFT_4294 0.55 -0.2 98,218 + EX28DRAFT_4294 0.61 -0.4 98,218 + EX28DRAFT_4294 0.61 +0.7 98,254 + EX28DRAFT_4294 0.64 +0.0 98,289 - EX28DRAFT_4294 0.66 +0.3 98,461 + EX28DRAFT_4294 0.80 +0.1 98,462 - EX28DRAFT_4294 0.80 -0.1 98,462 - EX28DRAFT_4294 0.80 +0.2 98,470 + EX28DRAFT_4294 0.81 -0.1 98,470 + EX28DRAFT_4294 0.81 +2.0 98,493 - EX28DRAFT_4294 0.82 -0.1 98,590 + +1.1 98,641 + -0.5 98,641 + -1.0 98,641 + -0.0 98,648 + +0.0 98,649 - +0.0 98,753 + +0.3 98,754 - -0.1 98,754 - +0.4 98,754 - +0.1 98,852 + -1.5 98,852 + -0.0
Or see this region's nucleotide sequence