Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3554 and EX28DRAFT_3555 overlap by 20 nucleotides EX28DRAFT_3555 and EX28DRAFT_3556 are separated by 2 nucleotides EX28DRAFT_3556 and EX28DRAFT_3557 are separated by 32 nucleotides EX28DRAFT_3557 and EX28DRAFT_3558 overlap by 4 nucleotides
EX28DRAFT_3554: EX28DRAFT_3554 - P pilus assembly protein, porin PapC, at 217,649 to 219,877
_3554
EX28DRAFT_3555: EX28DRAFT_3555 - P pilus assembly protein, chaperone PapD, at 219,858 to 220,634
_3555
EX28DRAFT_3556: EX28DRAFT_3556 - Uncharacterized secreted protein, at 220,637 to 221,131
_3556
EX28DRAFT_3557: EX28DRAFT_3557 - Bacterial regulatory proteins, luxR family, at 221,164 to 221,706
_3557
EX28DRAFT_3558: EX28DRAFT_3558 - EAL domain, at 221,703 to 222,341
_3558
Position (kb) 220
221
222 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 219.842 kb on + strand at 219.842 kb on + strand at 219.843 kb on - strand at 219.955 kb on + strand, within EX28DRAFT_3555 at 220.030 kb on + strand, within EX28DRAFT_3555 at 220.046 kb on + strand, within EX28DRAFT_3555 at 220.101 kb on + strand, within EX28DRAFT_3555 at 220.101 kb on + strand, within EX28DRAFT_3555 at 220.101 kb on + strand, within EX28DRAFT_3555 at 220.102 kb on - strand, within EX28DRAFT_3555 at 220.102 kb on - strand, within EX28DRAFT_3555 at 220.102 kb on - strand, within EX28DRAFT_3555 at 220.102 kb on - strand, within EX28DRAFT_3555 at 220.102 kb on - strand, within EX28DRAFT_3555 at 220.102 kb on - strand, within EX28DRAFT_3555 at 220.205 kb on + strand, within EX28DRAFT_3555 at 220.340 kb on + strand, within EX28DRAFT_3555 at 220.343 kb on + strand, within EX28DRAFT_3555 at 220.344 kb on - strand, within EX28DRAFT_3555 at 220.451 kb on - strand, within EX28DRAFT_3555 at 220.490 kb on + strand, within EX28DRAFT_3555 at 220.641 kb on + strand at 220.652 kb on + strand at 220.671 kb on + strand at 220.672 kb on - strand at 220.672 kb on - strand at 220.720 kb on - strand, within EX28DRAFT_3556 at 221.005 kb on + strand, within EX28DRAFT_3556 at 221.007 kb on - strand, within EX28DRAFT_3556 at 221.108 kb on + strand at 221.108 kb on + strand at 221.108 kb on + strand at 221.108 kb on + strand at 221.108 kb on + strand at 221.108 kb on + strand at 221.108 kb on + strand at 221.108 kb on + strand at 221.109 kb on - strand at 221.109 kb on - strand at 221.109 kb on - strand at 221.109 kb on - strand at 221.109 kb on - strand at 221.137 kb on + strand at 221.137 kb on + strand at 221.165 kb on + strand at 221.264 kb on + strand, within EX28DRAFT_3557 at 221.264 kb on + strand, within EX28DRAFT_3557 at 221.264 kb on + strand, within EX28DRAFT_3557 at 221.264 kb on + strand, within EX28DRAFT_3557 at 221.265 kb on - strand, within EX28DRAFT_3557 at 221.265 kb on - strand, within EX28DRAFT_3557 at 221.265 kb on - strand, within EX28DRAFT_3557 at 221.265 kb on - strand, within EX28DRAFT_3557 at 221.283 kb on + strand, within EX28DRAFT_3557 at 221.283 kb on + strand, within EX28DRAFT_3557 at 221.284 kb on - strand, within EX28DRAFT_3557 at 221.499 kb on + strand, within EX28DRAFT_3557 at 221.499 kb on + strand, within EX28DRAFT_3557 at 221.499 kb on + strand, within EX28DRAFT_3557 at 221.500 kb on - strand, within EX28DRAFT_3557 at 221.503 kb on + strand, within EX28DRAFT_3557 at 221.588 kb on + strand, within EX28DRAFT_3557 at 221.588 kb on + strand, within EX28DRAFT_3557 at 221.588 kb on + strand, within EX28DRAFT_3557 at 221.588 kb on + strand, within EX28DRAFT_3557 at 221.589 kb on - strand, within EX28DRAFT_3557 at 221.652 kb on + strand at 221.652 kb on + strand at 221.653 kb on - strand at 221.873 kb on + strand, within EX28DRAFT_3558 at 221.873 kb on + strand, within EX28DRAFT_3558 at 221.873 kb on + strand, within EX28DRAFT_3558 at 221.874 kb on - strand, within EX28DRAFT_3558 at 221.958 kb on + strand, within EX28DRAFT_3558 at 221.958 kb on + strand, within EX28DRAFT_3558 at 221.958 kb on + strand, within EX28DRAFT_3558 at 221.959 kb on - strand, within EX28DRAFT_3558 at 221.964 kb on + strand, within EX28DRAFT_3558 at 222.039 kb on - strand, within EX28DRAFT_3558 at 222.039 kb on - strand, within EX28DRAFT_3558 at 222.123 kb on + strand, within EX28DRAFT_3558
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 219,842 + -0.4 219,842 + -0.1 219,843 - +0.2 219,955 + EX28DRAFT_3555 0.12 +0.5 220,030 + EX28DRAFT_3555 0.22 +0.6 220,046 + EX28DRAFT_3555 0.24 -0.1 220,101 + EX28DRAFT_3555 0.31 -0.3 220,101 + EX28DRAFT_3555 0.31 +0.1 220,101 + EX28DRAFT_3555 0.31 +0.0 220,102 - EX28DRAFT_3555 0.31 -0.5 220,102 - EX28DRAFT_3555 0.31 +0.7 220,102 - EX28DRAFT_3555 0.31 +0.3 220,102 - EX28DRAFT_3555 0.31 -0.6 220,102 - EX28DRAFT_3555 0.31 +0.3 220,102 - EX28DRAFT_3555 0.31 -0.6 220,205 + EX28DRAFT_3555 0.45 +0.1 220,340 + EX28DRAFT_3555 0.62 -0.4 220,343 + EX28DRAFT_3555 0.62 +0.1 220,344 - EX28DRAFT_3555 0.63 +0.7 220,451 - EX28DRAFT_3555 0.76 +0.1 220,490 + EX28DRAFT_3555 0.81 -1.4 220,641 + +0.8 220,652 + +0.3 220,671 + +1.2 220,672 - -0.5 220,672 - +0.1 220,720 - EX28DRAFT_3556 0.17 +1.6 221,005 + EX28DRAFT_3556 0.74 +0.7 221,007 - EX28DRAFT_3556 0.75 +0.2 221,108 + +0.7 221,108 + -0.3 221,108 + -0.4 221,108 + -0.2 221,108 + +0.2 221,108 + -0.1 221,108 + +0.2 221,108 + +0.9 221,109 - +0.3 221,109 - +0.2 221,109 - +0.3 221,109 - +0.1 221,109 - +0.2 221,137 + -0.2 221,137 + +0.3 221,165 + -0.3 221,264 + EX28DRAFT_3557 0.18 +0.1 221,264 + EX28DRAFT_3557 0.18 +0.0 221,264 + EX28DRAFT_3557 0.18 +0.4 221,264 + EX28DRAFT_3557 0.18 -0.1 221,265 - EX28DRAFT_3557 0.19 -1.1 221,265 - EX28DRAFT_3557 0.19 -0.2 221,265 - EX28DRAFT_3557 0.19 +0.3 221,265 - EX28DRAFT_3557 0.19 -0.4 221,283 + EX28DRAFT_3557 0.22 -0.4 221,283 + EX28DRAFT_3557 0.22 -1.1 221,284 - EX28DRAFT_3557 0.22 -1.2 221,499 + EX28DRAFT_3557 0.62 -0.4 221,499 + EX28DRAFT_3557 0.62 -0.6 221,499 + EX28DRAFT_3557 0.62 -0.3 221,500 - EX28DRAFT_3557 0.62 -0.6 221,503 + EX28DRAFT_3557 0.62 +0.2 221,588 + EX28DRAFT_3557 0.78 +0.3 221,588 + EX28DRAFT_3557 0.78 -0.3 221,588 + EX28DRAFT_3557 0.78 -0.1 221,588 + EX28DRAFT_3557 0.78 +0.3 221,589 - EX28DRAFT_3557 0.78 +0.0 221,652 + +0.6 221,652 + -0.2 221,653 - +0.1 221,873 + EX28DRAFT_3558 0.27 +0.1 221,873 + EX28DRAFT_3558 0.27 +0.5 221,873 + EX28DRAFT_3558 0.27 -0.2 221,874 - EX28DRAFT_3558 0.27 -4.1 221,958 + EX28DRAFT_3558 0.40 +0.0 221,958 + EX28DRAFT_3558 0.40 +0.1 221,958 + EX28DRAFT_3558 0.40 +0.6 221,959 - EX28DRAFT_3558 0.40 +0.1 221,964 + EX28DRAFT_3558 0.41 +0.3 222,039 - EX28DRAFT_3558 0.53 +0.2 222,039 - EX28DRAFT_3558 0.53 +0.1 222,123 + EX28DRAFT_3558 0.66 -0.3
Or see this region's nucleotide sequence