Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3516 and EX28DRAFT_3517 are separated by 152 nucleotides EX28DRAFT_3517 and EX28DRAFT_3518 overlap by 8 nucleotides EX28DRAFT_3518 and EX28DRAFT_3519 overlap by 26 nucleotides EX28DRAFT_3519 and EX28DRAFT_3520 are separated by 148 nucleotides EX28DRAFT_3520 and EX28DRAFT_3521 overlap by 1 nucleotides
EX28DRAFT_3516: EX28DRAFT_3516 - NAD-dependent aldehyde dehydrogenases, at 181,306 to 182,721
_3516
EX28DRAFT_3517: EX28DRAFT_3517 - Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides, at 182,874 to 183,197
_3517
EX28DRAFT_3518: EX28DRAFT_3518 - ACT domain-containing protein, at 183,190 to 183,585
_3518
EX28DRAFT_3519: EX28DRAFT_3519 - Predicted transcriptional regulators, at 183,560 to 184,255
_3519
EX28DRAFT_3520: EX28DRAFT_3520 - Transcriptional regulators, at 184,404 to 184,874
_3520
EX28DRAFT_3521: EX28DRAFT_3521 - Multidrug resistance efflux pump, at 184,874 to 185,938
_3521
Position (kb) 183
184
185 Strain fitness (log2 ratio) -1
0
1 at 182.644 kb on - strand at 182.644 kb on - strand at 182.799 kb on + strand at 182.799 kb on + strand at 182.799 kb on + strand at 182.800 kb on - strand at 183.129 kb on + strand, within EX28DRAFT_3517 at 183.130 kb on - strand, within EX28DRAFT_3517 at 183.193 kb on + strand at 183.193 kb on + strand at 183.193 kb on + strand at 183.194 kb on - strand at 183.364 kb on - strand, within EX28DRAFT_3518 at 183.522 kb on + strand, within EX28DRAFT_3518 at 183.522 kb on + strand, within EX28DRAFT_3518 at 183.523 kb on - strand, within EX28DRAFT_3518 at 183.523 kb on - strand, within EX28DRAFT_3518 at 183.559 kb on + strand at 183.559 kb on + strand at 183.559 kb on + strand at 183.560 kb on - strand at 183.560 kb on - strand at 183.577 kb on - strand at 183.577 kb on - strand at 183.586 kb on + strand at 183.806 kb on + strand, within EX28DRAFT_3519 at 183.926 kb on + strand, within EX28DRAFT_3519 at 183.962 kb on + strand, within EX28DRAFT_3519 at 184.235 kb on - strand at 184.647 kb on + strand, within EX28DRAFT_3520 at 184.671 kb on + strand, within EX28DRAFT_3520 at 184.672 kb on - strand, within EX28DRAFT_3520 at 184.720 kb on + strand, within EX28DRAFT_3520 at 184.721 kb on - strand, within EX28DRAFT_3520 at 184.723 kb on + strand, within EX28DRAFT_3520 at 184.724 kb on - strand, within EX28DRAFT_3520 at 184.724 kb on - strand, within EX28DRAFT_3520 at 184.724 kb on - strand, within EX28DRAFT_3520 at 184.752 kb on + strand, within EX28DRAFT_3520 at 184.790 kb on + strand, within EX28DRAFT_3520 at 184.791 kb on - strand, within EX28DRAFT_3520 at 184.857 kb on - strand at 184.948 kb on + strand at 185.046 kb on + strand, within EX28DRAFT_3521 at 185.046 kb on + strand, within EX28DRAFT_3521 at 185.047 kb on - strand, within EX28DRAFT_3521
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 182,644 - -0.1 182,644 - -0.1 182,799 + -1.1 182,799 + -0.2 182,799 + +0.2 182,800 - -0.3 183,129 + EX28DRAFT_3517 0.79 -0.0 183,130 - EX28DRAFT_3517 0.79 +0.3 183,193 + -0.3 183,193 + -0.2 183,193 + -0.1 183,194 - +0.2 183,364 - EX28DRAFT_3518 0.44 -0.4 183,522 + EX28DRAFT_3518 0.84 +0.2 183,522 + EX28DRAFT_3518 0.84 -0.6 183,523 - EX28DRAFT_3518 0.84 +1.2 183,523 - EX28DRAFT_3518 0.84 -0.3 183,559 + -0.5 183,559 + +0.1 183,559 + -0.1 183,560 - -0.1 183,560 - -0.2 183,577 - -0.1 183,577 - +0.1 183,586 + +0.4 183,806 + EX28DRAFT_3519 0.35 +0.4 183,926 + EX28DRAFT_3519 0.53 -1.2 183,962 + EX28DRAFT_3519 0.58 -0.7 184,235 - +0.1 184,647 + EX28DRAFT_3520 0.52 +0.4 184,671 + EX28DRAFT_3520 0.57 +1.1 184,672 - EX28DRAFT_3520 0.57 +0.0 184,720 + EX28DRAFT_3520 0.67 -0.1 184,721 - EX28DRAFT_3520 0.67 +0.2 184,723 + EX28DRAFT_3520 0.68 +0.2 184,724 - EX28DRAFT_3520 0.68 -0.6 184,724 - EX28DRAFT_3520 0.68 +0.0 184,724 - EX28DRAFT_3520 0.68 -0.1 184,752 + EX28DRAFT_3520 0.74 +0.7 184,790 + EX28DRAFT_3520 0.82 -0.3 184,791 - EX28DRAFT_3520 0.82 -0.6 184,857 - +0.3 184,948 + -0.2 185,046 + EX28DRAFT_3521 0.16 -0.1 185,046 + EX28DRAFT_3521 0.16 +0.1 185,047 - EX28DRAFT_3521 0.16 -0.7
Or see this region's nucleotide sequence