Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3459 and EX28DRAFT_3460 are separated by 1 nucleotides EX28DRAFT_3460 and EX28DRAFT_3461 are separated by 264 nucleotides EX28DRAFT_3461 and EX28DRAFT_3462 are separated by 164 nucleotides EX28DRAFT_3462 and EX28DRAFT_3463 are separated by 46 nucleotides
EX28DRAFT_3459: EX28DRAFT_3459 - Protein of unknown function (DUF3828), at 133,801 to 134,253
_3459
EX28DRAFT_3460: EX28DRAFT_3460 - hypothetical protein, at 134,255 to 134,617
_3460
EX28DRAFT_3461: EX28DRAFT_3461 - ornithine carbamoyltransferase, at 134,882 to 135,886
_3461
EX28DRAFT_3462: EX28DRAFT_3462 - Uncharacterized protein conserved in bacteria, at 136,051 to 136,476
_3462
EX28DRAFT_3463: EX28DRAFT_3463 - Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA, at 136,523 to 137,281
_3463
Position (kb) 134
135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 133.888 kb on + strand, within EX28DRAFT_3459 at 133.894 kb on + strand, within EX28DRAFT_3459 at 133.894 kb on + strand, within EX28DRAFT_3459 at 133.895 kb on - strand, within EX28DRAFT_3459 at 133.925 kb on + strand, within EX28DRAFT_3459 at 133.926 kb on - strand, within EX28DRAFT_3459 at 133.926 kb on - strand, within EX28DRAFT_3459 at 133.926 kb on - strand, within EX28DRAFT_3459 at 133.927 kb on + strand, within EX28DRAFT_3459 at 133.927 kb on + strand, within EX28DRAFT_3459 at 133.969 kb on + strand, within EX28DRAFT_3459 at 133.970 kb on - strand, within EX28DRAFT_3459 at 134.096 kb on + strand, within EX28DRAFT_3459 at 134.104 kb on + strand, within EX28DRAFT_3459 at 134.340 kb on + strand, within EX28DRAFT_3460 at 134.366 kb on - strand, within EX28DRAFT_3460 at 134.408 kb on - strand, within EX28DRAFT_3460 at 134.524 kb on + strand, within EX28DRAFT_3460 at 134.605 kb on + strand at 134.762 kb on - strand at 134.871 kb on - strand at 134.914 kb on + strand at 135.198 kb on + strand, within EX28DRAFT_3461 at 135.199 kb on - strand, within EX28DRAFT_3461 at 135.202 kb on + strand, within EX28DRAFT_3461 at 135.203 kb on - strand, within EX28DRAFT_3461 at 135.571 kb on - strand, within EX28DRAFT_3461 at 135.661 kb on - strand, within EX28DRAFT_3461 at 135.979 kb on + strand at 136.022 kb on - strand at 136.022 kb on - strand at 136.022 kb on - strand at 136.101 kb on + strand, within EX28DRAFT_3462 at 136.144 kb on + strand, within EX28DRAFT_3462 at 136.144 kb on + strand, within EX28DRAFT_3462 at 136.144 kb on + strand, within EX28DRAFT_3462 at 136.144 kb on + strand, within EX28DRAFT_3462 at 136.145 kb on - strand, within EX28DRAFT_3462 at 136.333 kb on - strand, within EX28DRAFT_3462 at 136.390 kb on + strand, within EX28DRAFT_3462 at 136.390 kb on + strand, within EX28DRAFT_3462 at 136.390 kb on + strand, within EX28DRAFT_3462 at 136.390 kb on + strand, within EX28DRAFT_3462 at 136.391 kb on - strand, within EX28DRAFT_3462 at 136.441 kb on + strand at 136.540 kb on - strand at 136.540 kb on - strand at 136.594 kb on + strand at 136.595 kb on - strand at 136.687 kb on + strand, within EX28DRAFT_3463 at 136.691 kb on + strand, within EX28DRAFT_3463 at 136.742 kb on + strand, within EX28DRAFT_3463 at 136.861 kb on + strand, within EX28DRAFT_3463 at 136.861 kb on + strand, within EX28DRAFT_3463 at 136.862 kb on - strand, within EX28DRAFT_3463
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 133,888 + EX28DRAFT_3459 0.19 -0.8 133,894 + EX28DRAFT_3459 0.21 -0.3 133,894 + EX28DRAFT_3459 0.21 +0.2 133,895 - EX28DRAFT_3459 0.21 +0.5 133,925 + EX28DRAFT_3459 0.27 +0.3 133,926 - EX28DRAFT_3459 0.28 -0.1 133,926 - EX28DRAFT_3459 0.28 +0.6 133,926 - EX28DRAFT_3459 0.28 +0.1 133,927 + EX28DRAFT_3459 0.28 +0.1 133,927 + EX28DRAFT_3459 0.28 +0.4 133,969 + EX28DRAFT_3459 0.37 +0.1 133,970 - EX28DRAFT_3459 0.37 -0.1 134,096 + EX28DRAFT_3459 0.65 -0.3 134,104 + EX28DRAFT_3459 0.67 +0.0 134,340 + EX28DRAFT_3460 0.23 -0.9 134,366 - EX28DRAFT_3460 0.31 -0.2 134,408 - EX28DRAFT_3460 0.42 -0.6 134,524 + EX28DRAFT_3460 0.74 -0.2 134,605 + +0.4 134,762 - -0.3 134,871 - -1.0 134,914 + -0.1 135,198 + EX28DRAFT_3461 0.31 -0.5 135,199 - EX28DRAFT_3461 0.32 -1.0 135,202 + EX28DRAFT_3461 0.32 +1.2 135,203 - EX28DRAFT_3461 0.32 -3.3 135,571 - EX28DRAFT_3461 0.69 +0.1 135,661 - EX28DRAFT_3461 0.78 -1.8 135,979 + +0.0 136,022 - +0.6 136,022 - -2.3 136,022 - +0.5 136,101 + EX28DRAFT_3462 0.12 +0.1 136,144 + EX28DRAFT_3462 0.22 +0.9 136,144 + EX28DRAFT_3462 0.22 +0.9 136,144 + EX28DRAFT_3462 0.22 +0.4 136,144 + EX28DRAFT_3462 0.22 -1.3 136,145 - EX28DRAFT_3462 0.22 +0.3 136,333 - EX28DRAFT_3462 0.66 -1.2 136,390 + EX28DRAFT_3462 0.80 -0.2 136,390 + EX28DRAFT_3462 0.80 +1.2 136,390 + EX28DRAFT_3462 0.80 -0.6 136,390 + EX28DRAFT_3462 0.80 -0.1 136,391 - EX28DRAFT_3462 0.80 -0.3 136,441 + +0.4 136,540 - +0.2 136,540 - -0.3 136,594 + +0.3 136,595 - +0.0 136,687 + EX28DRAFT_3463 0.22 +0.5 136,691 + EX28DRAFT_3463 0.22 -0.3 136,742 + EX28DRAFT_3463 0.29 -0.3 136,861 + EX28DRAFT_3463 0.45 -0.2 136,861 + EX28DRAFT_3463 0.45 -0.2 136,862 - EX28DRAFT_3463 0.45 +1.7
Or see this region's nucleotide sequence