Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3036

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3033 and EX28DRAFT_3034 are separated by 10 nucleotidesEX28DRAFT_3034 and EX28DRAFT_3035 are separated by 179 nucleotidesEX28DRAFT_3035 and EX28DRAFT_3036 are separated by 52 nucleotidesEX28DRAFT_3036 and EX28DRAFT_3037 are separated by 155 nucleotidesEX28DRAFT_3037 and EX28DRAFT_3038 are separated by 128 nucleotides EX28DRAFT_3033: EX28DRAFT_3033 - transcriptional regulator, TetR family, at 344,471 to 345,061 _3033 EX28DRAFT_3034: EX28DRAFT_3034 - hypothetical protein, at 345,072 to 345,350 _3034 EX28DRAFT_3035: EX28DRAFT_3035 - hypothetical protein, at 345,530 to 345,979 _3035 EX28DRAFT_3036: EX28DRAFT_3036 - RNA, at 346,032 to 346,118 _3036 EX28DRAFT_3037: EX28DRAFT_3037 - hypothetical protein, at 346,274 to 346,528 _3037 EX28DRAFT_3038: EX28DRAFT_3038 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 346,657 to 348,204 _3038 Position (kb) 346 347Strain fitness (log2 ratio) -1 0 1at 345.175 kb on + strand, within EX28DRAFT_3034at 345.242 kb on + strand, within EX28DRAFT_3034at 345.243 kb on - strand, within EX28DRAFT_3034at 345.247 kb on - strand, within EX28DRAFT_3034at 345.247 kb on - strand, within EX28DRAFT_3034at 345.251 kb on + strand, within EX28DRAFT_3034at 345.251 kb on + strand, within EX28DRAFT_3034at 345.251 kb on + strand, within EX28DRAFT_3034at 345.252 kb on - strand, within EX28DRAFT_3034at 345.306 kb on - strand, within EX28DRAFT_3034at 345.331 kb on - strandat 345.331 kb on - strandat 345.338 kb on - strandat 345.338 kb on - strandat 345.384 kb on - strandat 345.409 kb on + strandat 345.431 kb on - strandat 345.451 kb on + strandat 345.452 kb on - strandat 345.453 kb on + strandat 345.477 kb on + strandat 345.532 kb on - strandat 345.532 kb on - strandat 345.595 kb on - strand, within EX28DRAFT_3035at 345.690 kb on + strand, within EX28DRAFT_3035at 345.691 kb on - strand, within EX28DRAFT_3035at 345.879 kb on + strand, within EX28DRAFT_3035at 345.886 kb on - strand, within EX28DRAFT_3035at 346.061 kb on + strand, within EX28DRAFT_3036at 346.062 kb on - strand, within EX28DRAFT_3036at 346.090 kb on + strand, within EX28DRAFT_3036at 346.139 kb on + strandat 346.139 kb on + strandat 346.140 kb on - strandat 346.140 kb on - strandat 346.140 kb on - strandat 346.140 kb on - strandat 346.140 kb on - strandat 346.216 kb on + strandat 346.279 kb on - strandat 346.279 kb on - strandat 346.282 kb on + strandat 346.282 kb on + strandat 346.282 kb on + strandat 346.282 kb on + strandat 346.283 kb on - strandat 346.283 kb on - strandat 346.514 kb on + strandat 346.515 kb on - strandat 346.541 kb on + strandat 346.541 kb on + strandat 346.571 kb on - strandat 346.581 kb on + strandat 346.622 kb on + strandat 346.623 kb on - strandat 346.623 kb on - strandat 346.658 kb on + strandat 346.934 kb on - strand, within EX28DRAFT_3038

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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345,175 + EX28DRAFT_3034 0.37 +0.2
345,242 + EX28DRAFT_3034 0.61 -0.5
345,243 - EX28DRAFT_3034 0.61 -0.6
345,247 - EX28DRAFT_3034 0.63 +0.5
345,247 - EX28DRAFT_3034 0.63 -0.7
345,251 + EX28DRAFT_3034 0.64 +0.0
345,251 + EX28DRAFT_3034 0.64 +0.5
345,251 + EX28DRAFT_3034 0.64 -0.5
345,252 - EX28DRAFT_3034 0.65 -0.1
345,306 - EX28DRAFT_3034 0.84 -0.6
345,331 - +0.4
345,331 - -0.8
345,338 - -0.1
345,338 - +0.0
345,384 - +0.1
345,409 + -0.6
345,431 - -0.3
345,451 + -0.3
345,452 - +1.2
345,453 + -0.5
345,477 + -0.5
345,532 - -0.4
345,532 - -0.0
345,595 - EX28DRAFT_3035 0.14 +0.1
345,690 + EX28DRAFT_3035 0.36 -0.9
345,691 - EX28DRAFT_3035 0.36 -0.4
345,879 + EX28DRAFT_3035 0.78 -0.2
345,886 - EX28DRAFT_3035 0.79 -0.5
346,061 + EX28DRAFT_3036 0.33 -0.9
346,062 - EX28DRAFT_3036 0.34 -0.2
346,090 + EX28DRAFT_3036 0.67 -0.7
346,139 + -0.1
346,139 + -0.2
346,140 - +0.2
346,140 - -0.4
346,140 - -0.2
346,140 - -0.2
346,140 - +0.5
346,216 + +0.6
346,279 - +0.4
346,279 - +0.0
346,282 + -0.0
346,282 + -0.2
346,282 + -0.3
346,282 + +1.5
346,283 - +0.3
346,283 - -0.8
346,514 + -0.2
346,515 - -0.0
346,541 + -0.3
346,541 + +0.3
346,571 - -0.2
346,581 + +0.0
346,622 + +0.1
346,623 - -0.8
346,623 - -1.0
346,658 + +0.7
346,934 - EX28DRAFT_3038 0.18 -0.3

Or see this region's nucleotide sequence