Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2998 and EX28DRAFT_2999 are separated by 26 nucleotides EX28DRAFT_2999 and EX28DRAFT_3000 are separated by 53 nucleotides EX28DRAFT_3000 and EX28DRAFT_3001 are separated by 225 nucleotides
EX28DRAFT_2998: EX28DRAFT_2998 - A/G-specific DNA-adenine glycosylase (EC 3.2.2.-), at 306,568 to 307,626
_2998
EX28DRAFT_2999: EX28DRAFT_2999 - Fe-S cluster protector protein, at 307,653 to 307,925
_2999
EX28DRAFT_3000: EX28DRAFT_3000 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 307,979 to 309,058
_3000
EX28DRAFT_3001: EX28DRAFT_3001 - nucleoside transporter, at 309,284 to 310,540
_3001
Position (kb) 307
308
309
310 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 307.074 kb on - strand, within EX28DRAFT_2998 at 307.074 kb on - strand, within EX28DRAFT_2998 at 307.074 kb on - strand, within EX28DRAFT_2998 at 307.275 kb on + strand, within EX28DRAFT_2998 at 307.275 kb on + strand, within EX28DRAFT_2998 at 307.275 kb on + strand, within EX28DRAFT_2998 at 307.276 kb on - strand, within EX28DRAFT_2998 at 307.276 kb on - strand, within EX28DRAFT_2998 at 307.276 kb on - strand, within EX28DRAFT_2998 at 307.276 kb on - strand, within EX28DRAFT_2998 at 307.276 kb on - strand, within EX28DRAFT_2998 at 307.346 kb on + strand, within EX28DRAFT_2998 at 307.346 kb on + strand, within EX28DRAFT_2998 at 307.346 kb on + strand, within EX28DRAFT_2998 at 307.347 kb on - strand, within EX28DRAFT_2998 at 307.347 kb on - strand, within EX28DRAFT_2998 at 307.348 kb on + strand, within EX28DRAFT_2998 at 307.540 kb on + strand at 307.542 kb on + strand at 307.543 kb on - strand at 307.547 kb on + strand at 307.604 kb on + strand at 307.604 kb on + strand at 307.605 kb on - strand at 307.605 kb on - strand at 307.673 kb on + strand at 307.743 kb on + strand, within EX28DRAFT_2999 at 307.743 kb on + strand, within EX28DRAFT_2999 at 307.905 kb on + strand at 307.906 kb on - strand at 307.908 kb on - strand at 307.908 kb on - strand at 307.908 kb on - strand at 307.924 kb on - strand at 307.952 kb on - strand at 308.128 kb on + strand, within EX28DRAFT_3000 at 308.128 kb on + strand, within EX28DRAFT_3000 at 308.129 kb on - strand, within EX28DRAFT_3000 at 308.129 kb on - strand, within EX28DRAFT_3000 at 308.129 kb on - strand, within EX28DRAFT_3000 at 308.129 kb on - strand, within EX28DRAFT_3000 at 308.129 kb on - strand, within EX28DRAFT_3000 at 308.130 kb on + strand, within EX28DRAFT_3000 at 308.130 kb on + strand, within EX28DRAFT_3000 at 308.164 kb on + strand, within EX28DRAFT_3000 at 308.171 kb on + strand, within EX28DRAFT_3000 at 308.171 kb on + strand, within EX28DRAFT_3000 at 308.171 kb on + strand, within EX28DRAFT_3000 at 308.172 kb on - strand, within EX28DRAFT_3000 at 308.176 kb on + strand, within EX28DRAFT_3000 at 308.180 kb on + strand, within EX28DRAFT_3000 at 308.181 kb on - strand, within EX28DRAFT_3000 at 308.181 kb on - strand, within EX28DRAFT_3000 at 308.228 kb on - strand, within EX28DRAFT_3000 at 308.324 kb on - strand, within EX28DRAFT_3000 at 308.333 kb on + strand, within EX28DRAFT_3000 at 308.334 kb on - strand, within EX28DRAFT_3000 at 308.447 kb on + strand, within EX28DRAFT_3000 at 308.494 kb on + strand, within EX28DRAFT_3000 at 308.548 kb on + strand, within EX28DRAFT_3000 at 308.548 kb on + strand, within EX28DRAFT_3000 at 308.549 kb on - strand, within EX28DRAFT_3000 at 308.552 kb on + strand, within EX28DRAFT_3000 at 308.553 kb on - strand, within EX28DRAFT_3000 at 308.585 kb on + strand, within EX28DRAFT_3000 at 308.586 kb on - strand, within EX28DRAFT_3000 at 308.617 kb on + strand, within EX28DRAFT_3000 at 308.686 kb on - strand, within EX28DRAFT_3000 at 308.753 kb on + strand, within EX28DRAFT_3000 at 308.753 kb on + strand, within EX28DRAFT_3000 at 308.754 kb on - strand, within EX28DRAFT_3000 at 308.967 kb on - strand at 309.012 kb on - strand at 309.017 kb on + strand at 309.017 kb on + strand at 309.017 kb on + strand at 309.017 kb on + strand at 309.018 kb on - strand at 309.044 kb on + strand at 309.044 kb on + strand at 309.044 kb on + strand at 309.194 kb on + strand at 309.194 kb on + strand at 309.194 kb on + strand at 309.194 kb on + strand at 309.194 kb on + strand at 309.194 kb on + strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.195 kb on - strand at 309.225 kb on + strand at 309.293 kb on - strand at 309.353 kb on - strand at 309.365 kb on + strand at 309.365 kb on + strand at 309.365 kb on + strand at 309.366 kb on - strand at 309.366 kb on - strand at 309.366 kb on - strand at 309.367 kb on + strand at 309.367 kb on + strand at 309.367 kb on + strand at 309.368 kb on - strand at 309.368 kb on - strand at 309.497 kb on + strand, within EX28DRAFT_3001 at 309.497 kb on + strand, within EX28DRAFT_3001 at 309.498 kb on - strand, within EX28DRAFT_3001 at 309.498 kb on - strand, within EX28DRAFT_3001 at 309.586 kb on + strand, within EX28DRAFT_3001 at 309.586 kb on + strand, within EX28DRAFT_3001 at 309.599 kb on + strand, within EX28DRAFT_3001 at 309.599 kb on + strand, within EX28DRAFT_3001 at 309.599 kb on + strand, within EX28DRAFT_3001 at 309.599 kb on + strand, within EX28DRAFT_3001 at 309.600 kb on - strand, within EX28DRAFT_3001 at 309.600 kb on - strand, within EX28DRAFT_3001 at 309.600 kb on - strand, within EX28DRAFT_3001 at 309.602 kb on - strand, within EX28DRAFT_3001 at 309.602 kb on - strand, within EX28DRAFT_3001 at 309.602 kb on - strand, within EX28DRAFT_3001 at 309.635 kb on + strand, within EX28DRAFT_3001 at 309.635 kb on + strand, within EX28DRAFT_3001 at 309.635 kb on + strand, within EX28DRAFT_3001 at 309.636 kb on - strand, within EX28DRAFT_3001 at 309.691 kb on + strand, within EX28DRAFT_3001 at 309.692 kb on - strand, within EX28DRAFT_3001 at 309.712 kb on + strand, within EX28DRAFT_3001 at 309.713 kb on - strand, within EX28DRAFT_3001 at 309.761 kb on - strand, within EX28DRAFT_3001 at 309.770 kb on + strand, within EX28DRAFT_3001 at 309.771 kb on - strand, within EX28DRAFT_3001 at 309.771 kb on - strand, within EX28DRAFT_3001 at 309.771 kb on - strand, within EX28DRAFT_3001 at 309.771 kb on - strand, within EX28DRAFT_3001 at 309.838 kb on + strand, within EX28DRAFT_3001 at 309.838 kb on + strand, within EX28DRAFT_3001 at 309.899 kb on - strand, within EX28DRAFT_3001 at 309.925 kb on + strand, within EX28DRAFT_3001 at 309.925 kb on + strand, within EX28DRAFT_3001 at 309.925 kb on + strand, within EX28DRAFT_3001 at 310.057 kb on + strand, within EX28DRAFT_3001 at 310.058 kb on - strand, within EX28DRAFT_3001
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 307,074 - EX28DRAFT_2998 0.48 +0.1 307,074 - EX28DRAFT_2998 0.48 -0.5 307,074 - EX28DRAFT_2998 0.48 -0.5 307,275 + EX28DRAFT_2998 0.67 -0.9 307,275 + EX28DRAFT_2998 0.67 -0.1 307,275 + EX28DRAFT_2998 0.67 -0.3 307,276 - EX28DRAFT_2998 0.67 +0.5 307,276 - EX28DRAFT_2998 0.67 -0.1 307,276 - EX28DRAFT_2998 0.67 -0.6 307,276 - EX28DRAFT_2998 0.67 -0.0 307,276 - EX28DRAFT_2998 0.67 -0.6 307,346 + EX28DRAFT_2998 0.73 +0.3 307,346 + EX28DRAFT_2998 0.73 -2.2 307,346 + EX28DRAFT_2998 0.73 +0.2 307,347 - EX28DRAFT_2998 0.74 +0.6 307,347 - EX28DRAFT_2998 0.74 +0.1 307,348 + EX28DRAFT_2998 0.74 -1.0 307,540 + +0.6 307,542 + +0.3 307,543 - -0.7 307,547 + +0.5 307,604 + -0.4 307,604 + -2.2 307,605 - +0.7 307,605 - -0.0 307,673 + +0.5 307,743 + EX28DRAFT_2999 0.33 -0.3 307,743 + EX28DRAFT_2999 0.33 -0.4 307,905 + +0.1 307,906 - +1.8 307,908 - -0.4 307,908 - -0.0 307,908 - -0.1 307,924 - +0.3 307,952 - +0.7 308,128 + EX28DRAFT_3000 0.14 -0.0 308,128 + EX28DRAFT_3000 0.14 -0.2 308,129 - EX28DRAFT_3000 0.14 -0.2 308,129 - EX28DRAFT_3000 0.14 -1.6 308,129 - EX28DRAFT_3000 0.14 -0.6 308,129 - EX28DRAFT_3000 0.14 +0.3 308,129 - EX28DRAFT_3000 0.14 -0.0 308,130 + EX28DRAFT_3000 0.14 -0.4 308,130 + EX28DRAFT_3000 0.14 +0.0 308,164 + EX28DRAFT_3000 0.17 -0.5 308,171 + EX28DRAFT_3000 0.18 -3.0 308,171 + EX28DRAFT_3000 0.18 +1.0 308,171 + EX28DRAFT_3000 0.18 -0.5 308,172 - EX28DRAFT_3000 0.18 +0.3 308,176 + EX28DRAFT_3000 0.18 -0.4 308,180 + EX28DRAFT_3000 0.19 +0.3 308,181 - EX28DRAFT_3000 0.19 -0.2 308,181 - EX28DRAFT_3000 0.19 -0.9 308,228 - EX28DRAFT_3000 0.23 -0.2 308,324 - EX28DRAFT_3000 0.32 -0.4 308,333 + EX28DRAFT_3000 0.33 -0.3 308,334 - EX28DRAFT_3000 0.33 -0.1 308,447 + EX28DRAFT_3000 0.43 -0.0 308,494 + EX28DRAFT_3000 0.48 +0.2 308,548 + EX28DRAFT_3000 0.53 -0.3 308,548 + EX28DRAFT_3000 0.53 +0.1 308,549 - EX28DRAFT_3000 0.53 +0.1 308,552 + EX28DRAFT_3000 0.53 +0.0 308,553 - EX28DRAFT_3000 0.53 -0.5 308,585 + EX28DRAFT_3000 0.56 -0.7 308,586 - EX28DRAFT_3000 0.56 -0.9 308,617 + EX28DRAFT_3000 0.59 -0.4 308,686 - EX28DRAFT_3000 0.65 +0.0 308,753 + EX28DRAFT_3000 0.72 -0.3 308,753 + EX28DRAFT_3000 0.72 -0.4 308,754 - EX28DRAFT_3000 0.72 +0.1 308,967 - -0.2 309,012 - -0.5 309,017 + -0.1 309,017 + -0.5 309,017 + +0.4 309,017 + +0.5 309,018 - -0.1 309,044 + -0.7 309,044 + +2.7 309,044 + -0.3 309,194 + +0.9 309,194 + -0.2 309,194 + -0.4 309,194 + -2.5 309,194 + -1.2 309,194 + +0.0 309,195 - +0.0 309,195 - +0.3 309,195 - +0.0 309,195 - -0.3 309,195 - -0.4 309,195 - -0.4 309,195 - -0.1 309,195 - +1.1 309,195 - +3.7 309,195 - -0.6 309,195 - -0.8 309,195 - -0.7 309,225 + +0.1 309,293 - +0.5 309,353 - +0.1 309,365 + -0.5 309,365 + +0.3 309,365 + -0.4 309,366 - -0.1 309,366 - -0.2 309,366 - -0.2 309,367 + +0.3 309,367 + -1.3 309,367 + +0.5 309,368 - -0.6 309,368 - -1.0 309,497 + EX28DRAFT_3001 0.17 +1.4 309,497 + EX28DRAFT_3001 0.17 -0.2 309,498 - EX28DRAFT_3001 0.17 +0.5 309,498 - EX28DRAFT_3001 0.17 -0.8 309,586 + EX28DRAFT_3001 0.24 -0.1 309,586 + EX28DRAFT_3001 0.24 +0.3 309,599 + EX28DRAFT_3001 0.25 -0.5 309,599 + EX28DRAFT_3001 0.25 +0.3 309,599 + EX28DRAFT_3001 0.25 -0.7 309,599 + EX28DRAFT_3001 0.25 -0.3 309,600 - EX28DRAFT_3001 0.25 -0.2 309,600 - EX28DRAFT_3001 0.25 +1.0 309,600 - EX28DRAFT_3001 0.25 -0.1 309,602 - EX28DRAFT_3001 0.25 +0.6 309,602 - EX28DRAFT_3001 0.25 -0.1 309,602 - EX28DRAFT_3001 0.25 -0.3 309,635 + EX28DRAFT_3001 0.28 +1.9 309,635 + EX28DRAFT_3001 0.28 +0.2 309,635 + EX28DRAFT_3001 0.28 -0.3 309,636 - EX28DRAFT_3001 0.28 -0.1 309,691 + EX28DRAFT_3001 0.32 -0.0 309,692 - EX28DRAFT_3001 0.32 +0.3 309,712 + EX28DRAFT_3001 0.34 -0.4 309,713 - EX28DRAFT_3001 0.34 +0.2 309,761 - EX28DRAFT_3001 0.38 -0.7 309,770 + EX28DRAFT_3001 0.39 -0.6 309,771 - EX28DRAFT_3001 0.39 +0.3 309,771 - EX28DRAFT_3001 0.39 -1.3 309,771 - EX28DRAFT_3001 0.39 -0.1 309,771 - EX28DRAFT_3001 0.39 -0.9 309,838 + EX28DRAFT_3001 0.44 +0.8 309,838 + EX28DRAFT_3001 0.44 +0.2 309,899 - EX28DRAFT_3001 0.49 -1.6 309,925 + EX28DRAFT_3001 0.51 -1.0 309,925 + EX28DRAFT_3001 0.51 +0.5 309,925 + EX28DRAFT_3001 0.51 -0.1 310,057 + EX28DRAFT_3001 0.61 +0.0 310,058 - EX28DRAFT_3001 0.62 +0.5
Or see this region's nucleotide sequence