Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2927

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2926 and EX28DRAFT_2927 are separated by 37 nucleotidesEX28DRAFT_2927 and EX28DRAFT_2928 are separated by 121 nucleotidesEX28DRAFT_2928 and EX28DRAFT_2929 are separated by 27 nucleotides EX28DRAFT_2926: EX28DRAFT_2926 - Amino acid permeases, at 237,272 to 238,501 _2926 EX28DRAFT_2927: EX28DRAFT_2927 - Transcriptional regulators, at 238,539 to 239,009 _2927 EX28DRAFT_2928: EX28DRAFT_2928 - Putative threonine efflux protein, at 239,131 to 239,736 _2928 EX28DRAFT_2929: EX28DRAFT_2929 - Predicted acetyltransferase, at 239,764 to 240,036 _2929 Position (kb) 238 239 240Strain fitness (log2 ratio) -1 0 1at 237.548 kb on + strand, within EX28DRAFT_2926at 237.581 kb on + strand, within EX28DRAFT_2926at 237.779 kb on + strand, within EX28DRAFT_2926at 237.780 kb on - strand, within EX28DRAFT_2926at 237.780 kb on - strand, within EX28DRAFT_2926at 237.955 kb on + strand, within EX28DRAFT_2926at 238.050 kb on - strand, within EX28DRAFT_2926at 238.050 kb on - strand, within EX28DRAFT_2926at 238.347 kb on - strand, within EX28DRAFT_2926at 238.407 kb on - strandat 238.407 kb on - strandat 238.499 kb on + strandat 238.604 kb on + strand, within EX28DRAFT_2927at 238.605 kb on - strand, within EX28DRAFT_2927at 238.605 kb on - strand, within EX28DRAFT_2927at 238.956 kb on + strand, within EX28DRAFT_2927at 238.974 kb on + strandat 239.136 kb on + strandat 239.136 kb on + strandat 239.137 kb on - strandat 239.172 kb on + strandat 239.306 kb on + strand, within EX28DRAFT_2928at 239.595 kb on + strand, within EX28DRAFT_2928at 239.595 kb on + strand, within EX28DRAFT_2928at 239.605 kb on + strand, within EX28DRAFT_2928at 239.605 kb on + strand, within EX28DRAFT_2928at 239.605 kb on + strand, within EX28DRAFT_2928at 239.606 kb on - strand, within EX28DRAFT_2928at 239.606 kb on - strand, within EX28DRAFT_2928at 239.669 kb on + strand, within EX28DRAFT_2928at 239.711 kb on + strandat 239.717 kb on + strandat 239.717 kb on + strandat 239.718 kb on - strandat 239.784 kb on - strandat 239.784 kb on - strandat 239.797 kb on - strand, within EX28DRAFT_2929at 239.965 kb on + strand, within EX28DRAFT_2929at 239.966 kb on - strand, within EX28DRAFT_2929at 239.966 kb on - strand, within EX28DRAFT_2929at 240.006 kb on - strand, within EX28DRAFT_2929

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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237,548 + EX28DRAFT_2926 0.22 +0.1
237,581 + EX28DRAFT_2926 0.25 +0.6
237,779 + EX28DRAFT_2926 0.41 -0.8
237,780 - EX28DRAFT_2926 0.41 -0.1
237,780 - EX28DRAFT_2926 0.41 -0.0
237,955 + EX28DRAFT_2926 0.56 -0.0
238,050 - EX28DRAFT_2926 0.63 +1.6
238,050 - EX28DRAFT_2926 0.63 -0.1
238,347 - EX28DRAFT_2926 0.87 -0.2
238,407 - -0.1
238,407 - -0.7
238,499 + +0.0
238,604 + EX28DRAFT_2927 0.14 -0.1
238,605 - EX28DRAFT_2927 0.14 -0.7
238,605 - EX28DRAFT_2927 0.14 -0.9
238,956 + EX28DRAFT_2927 0.89 -0.9
238,974 + -0.8
239,136 + -0.0
239,136 + +0.5
239,137 - -0.1
239,172 + -0.0
239,306 + EX28DRAFT_2928 0.29 -0.1
239,595 + EX28DRAFT_2928 0.77 +0.3
239,595 + EX28DRAFT_2928 0.77 +0.4
239,605 + EX28DRAFT_2928 0.78 +0.2
239,605 + EX28DRAFT_2928 0.78 -0.5
239,605 + EX28DRAFT_2928 0.78 -1.3
239,606 - EX28DRAFT_2928 0.78 -0.0
239,606 - EX28DRAFT_2928 0.78 +0.4
239,669 + EX28DRAFT_2928 0.89 -0.2
239,711 + -0.7
239,717 + -0.0
239,717 + -0.7
239,718 - +0.0
239,784 - +0.5
239,784 - -0.4
239,797 - EX28DRAFT_2929 0.12 +1.2
239,965 + EX28DRAFT_2929 0.74 -0.3
239,966 - EX28DRAFT_2929 0.74 +0.6
239,966 - EX28DRAFT_2929 0.74 -0.1
240,006 - EX28DRAFT_2929 0.89 +0.2

Or see this region's nucleotide sequence