Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2584 and EX28DRAFT_2585 are separated by 97 nucleotides EX28DRAFT_2585 and EX28DRAFT_2586 are separated by 14 nucleotides EX28DRAFT_2586 and EX28DRAFT_2587 are separated by 102 nucleotides EX28DRAFT_2587 and EX28DRAFT_2588 are separated by 89 nucleotides
EX28DRAFT_2584: EX28DRAFT_2584 - Uncharacterized protein conserved in bacteria, at 2,619,569 to 2,620,027
_2584
EX28DRAFT_2585: EX28DRAFT_2585 - pyrroline-5-carboxylate reductase, at 2,620,125 to 2,620,934
_2585
EX28DRAFT_2586: EX28DRAFT_2586 - diguanylate cyclase (GGDEF) domain, at 2,620,949 to 2,622,052
_2586
EX28DRAFT_2587: EX28DRAFT_2587 - psiF repeat, at 2,622,155 to 2,622,475
_2587
EX28DRAFT_2588: EX28DRAFT_2588 - Alkaline phosphatase, at 2,622,565 to 2,623,980
_2588
Position (kb)
2620
2621
2622
2623 Strain fitness (log2 ratio)
-2
-1
0
1 at 2620.028 kb on - strand at 2620.028 kb on - strand at 2620.084 kb on + strand at 2620.107 kb on + strand at 2620.725 kb on + strand, within EX28DRAFT_2585 at 2620.805 kb on + strand, within EX28DRAFT_2585 at 2620.806 kb on - strand, within EX28DRAFT_2585 at 2621.032 kb on - strand at 2621.308 kb on + strand, within EX28DRAFT_2586 at 2621.458 kb on + strand, within EX28DRAFT_2586 at 2621.458 kb on + strand, within EX28DRAFT_2586 at 2621.458 kb on + strand, within EX28DRAFT_2586 at 2621.459 kb on - strand, within EX28DRAFT_2586 at 2621.549 kb on + strand, within EX28DRAFT_2586 at 2621.549 kb on + strand, within EX28DRAFT_2586 at 2621.549 kb on + strand, within EX28DRAFT_2586 at 2621.850 kb on - strand, within EX28DRAFT_2586 at 2622.030 kb on + strand at 2622.030 kb on + strand at 2622.031 kb on - strand at 2622.031 kb on - strand at 2622.031 kb on - strand at 2622.034 kb on - strand at 2622.085 kb on + strand at 2622.086 kb on - strand at 2622.111 kb on + strand at 2622.235 kb on + strand, within EX28DRAFT_2587 at 2622.302 kb on - strand, within EX28DRAFT_2587 at 2622.318 kb on + strand, within EX28DRAFT_2587 at 2622.318 kb on + strand, within EX28DRAFT_2587 at 2622.319 kb on - strand, within EX28DRAFT_2587 at 2622.368 kb on - strand, within EX28DRAFT_2587 at 2622.379 kb on + strand, within EX28DRAFT_2587 at 2622.379 kb on + strand, within EX28DRAFT_2587 at 2622.380 kb on - strand, within EX28DRAFT_2587 at 2622.380 kb on - strand, within EX28DRAFT_2587 at 2622.462 kb on - strand at 2622.571 kb on - strand at 2622.571 kb on - strand at 2622.596 kb on + strand at 2622.711 kb on - strand, within EX28DRAFT_2588 at 2622.741 kb on + strand, within EX28DRAFT_2588 at 2622.775 kb on - strand, within EX28DRAFT_2588 at 2622.775 kb on - strand, within EX28DRAFT_2588 at 2622.775 kb on - strand, within EX28DRAFT_2588 at 2622.953 kb on - strand, within EX28DRAFT_2588
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,620,028 - -0.5 2,620,028 - +0.3 2,620,084 + -0.2 2,620,107 + +0.4 2,620,725 + EX28DRAFT_2585 0.74 -1.0 2,620,805 + EX28DRAFT_2585 0.84 +0.7 2,620,806 - EX28DRAFT_2585 0.84 -2.4 2,621,032 - +0.1 2,621,308 + EX28DRAFT_2586 0.33 -0.0 2,621,458 + EX28DRAFT_2586 0.46 -0.7 2,621,458 + EX28DRAFT_2586 0.46 -0.1 2,621,458 + EX28DRAFT_2586 0.46 -0.1 2,621,459 - EX28DRAFT_2586 0.46 -0.7 2,621,549 + EX28DRAFT_2586 0.54 -0.1 2,621,549 + EX28DRAFT_2586 0.54 -0.9 2,621,549 + EX28DRAFT_2586 0.54 -0.5 2,621,850 - EX28DRAFT_2586 0.82 -0.1 2,622,030 + -0.2 2,622,030 + -0.8 2,622,031 - -0.4 2,622,031 - +0.0 2,622,031 - -0.2 2,622,034 - +0.2 2,622,085 + +0.3 2,622,086 - +0.2 2,622,111 + -1.0 2,622,235 + EX28DRAFT_2587 0.25 +0.0 2,622,302 - EX28DRAFT_2587 0.46 -0.0 2,622,318 + EX28DRAFT_2587 0.51 +0.2 2,622,318 + EX28DRAFT_2587 0.51 +0.2 2,622,319 - EX28DRAFT_2587 0.51 -1.1 2,622,368 - EX28DRAFT_2587 0.66 -0.8 2,622,379 + EX28DRAFT_2587 0.70 -0.3 2,622,379 + EX28DRAFT_2587 0.70 -0.2 2,622,380 - EX28DRAFT_2587 0.70 -0.6 2,622,380 - EX28DRAFT_2587 0.70 -0.1 2,622,462 - -0.1 2,622,571 - +0.3 2,622,571 - +0.2 2,622,596 + +0.7 2,622,711 - EX28DRAFT_2588 0.10 +0.7 2,622,741 + EX28DRAFT_2588 0.12 -0.4 2,622,775 - EX28DRAFT_2588 0.15 +0.4 2,622,775 - EX28DRAFT_2588 0.15 -0.0 2,622,775 - EX28DRAFT_2588 0.15 +0.4 2,622,953 - EX28DRAFT_2588 0.27 -0.0
Or see this region's nucleotide sequence