Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2468 and EX28DRAFT_2469 overlap by 8 nucleotides EX28DRAFT_2469 and EX28DRAFT_2470 are separated by 143 nucleotides EX28DRAFT_2470 and EX28DRAFT_2471 are separated by 44 nucleotides EX28DRAFT_2471 and EX28DRAFT_2472 overlap by 4 nucleotides
EX28DRAFT_2468: EX28DRAFT_2468 - TIGR00245 family protein, at 2,497,763 to 2,498,545
_2468
EX28DRAFT_2469: EX28DRAFT_2469 - ABC-type uncharacterized transport system, ATPase component, at 2,498,538 to 2,499,209
_2469
EX28DRAFT_2470: EX28DRAFT_2470 - hypothetical protein, at 2,499,353 to 2,500,204
_2470
EX28DRAFT_2471: EX28DRAFT_2471 - Membrane protease subunits, stomatin/prohibitin homologs, at 2,500,249 to 2,501,163
_2471
EX28DRAFT_2472: EX28DRAFT_2472 - Membrane protein implicated in regulation of membrane protease activity, at 2,501,160 to 2,501,612
_2472
Position (kb)
2499
2500
2501 Strain fitness (log2 ratio)
-1
0
1 at 2498.377 kb on + strand, within EX28DRAFT_2468 at 2498.379 kb on + strand, within EX28DRAFT_2468 at 2498.391 kb on + strand, within EX28DRAFT_2468 at 2498.392 kb on - strand, within EX28DRAFT_2468 at 2498.435 kb on + strand, within EX28DRAFT_2468 at 2498.436 kb on - strand, within EX28DRAFT_2468 at 2498.441 kb on - strand, within EX28DRAFT_2468 at 2498.527 kb on + strand at 2498.527 kb on + strand at 2498.534 kb on - strand at 2498.586 kb on - strand at 2498.586 kb on - strand at 2498.608 kb on - strand, within EX28DRAFT_2469 at 2498.608 kb on - strand, within EX28DRAFT_2469 at 2498.645 kb on + strand, within EX28DRAFT_2469 at 2498.882 kb on + strand, within EX28DRAFT_2469 at 2498.957 kb on - strand, within EX28DRAFT_2469 at 2499.074 kb on + strand, within EX28DRAFT_2469 at 2499.100 kb on - strand, within EX28DRAFT_2469 at 2499.187 kb on - strand at 2499.187 kb on - strand at 2499.187 kb on - strand at 2499.189 kb on + strand at 2499.190 kb on - strand at 2499.211 kb on - strand at 2499.235 kb on - strand at 2499.237 kb on + strand at 2499.252 kb on + strand at 2499.337 kb on - strand at 2499.345 kb on + strand at 2499.346 kb on - strand at 2499.361 kb on + strand at 2499.361 kb on + strand at 2499.361 kb on + strand at 2499.362 kb on - strand at 2499.415 kb on - strand at 2499.653 kb on - strand, within EX28DRAFT_2470 at 2499.676 kb on - strand, within EX28DRAFT_2470 at 2499.676 kb on - strand, within EX28DRAFT_2470 at 2499.676 kb on - strand, within EX28DRAFT_2470 at 2499.676 kb on - strand, within EX28DRAFT_2470 at 2499.676 kb on - strand, within EX28DRAFT_2470 at 2499.702 kb on + strand, within EX28DRAFT_2470 at 2499.702 kb on + strand, within EX28DRAFT_2470 at 2499.740 kb on - strand, within EX28DRAFT_2470 at 2499.817 kb on + strand, within EX28DRAFT_2470 at 2499.817 kb on + strand, within EX28DRAFT_2470 at 2499.974 kb on - strand, within EX28DRAFT_2470 at 2499.978 kb on + strand, within EX28DRAFT_2470 at 2500.124 kb on + strand at 2500.124 kb on + strand at 2500.124 kb on + strand at 2500.124 kb on + strand at 2500.125 kb on - strand at 2500.125 kb on - strand at 2500.183 kb on + strand at 2500.184 kb on - strand at 2500.188 kb on - strand at 2500.193 kb on + strand at 2500.193 kb on + strand at 2500.194 kb on - strand at 2500.249 kb on - strand at 2500.290 kb on + strand at 2500.543 kb on + strand, within EX28DRAFT_2471 at 2500.544 kb on - strand, within EX28DRAFT_2471 at 2500.672 kb on - strand, within EX28DRAFT_2471 at 2500.672 kb on - strand, within EX28DRAFT_2471 at 2500.908 kb on - strand, within EX28DRAFT_2471 at 2501.005 kb on + strand, within EX28DRAFT_2471 at 2501.006 kb on - strand, within EX28DRAFT_2471 at 2501.006 kb on - strand, within EX28DRAFT_2471 at 2501.025 kb on + strand, within EX28DRAFT_2471
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,498,377 + EX28DRAFT_2468 0.78 -0.1 2,498,379 + EX28DRAFT_2468 0.79 -0.3 2,498,391 + EX28DRAFT_2468 0.80 -0.6 2,498,392 - EX28DRAFT_2468 0.80 -0.2 2,498,435 + EX28DRAFT_2468 0.86 -0.7 2,498,436 - EX28DRAFT_2468 0.86 -0.4 2,498,441 - EX28DRAFT_2468 0.87 +0.6 2,498,527 + -0.1 2,498,527 + -0.5 2,498,534 - -0.7 2,498,586 - -1.5 2,498,586 - +0.1 2,498,608 - EX28DRAFT_2469 0.10 +0.7 2,498,608 - EX28DRAFT_2469 0.10 -0.3 2,498,645 + EX28DRAFT_2469 0.16 -0.4 2,498,882 + EX28DRAFT_2469 0.51 +0.2 2,498,957 - EX28DRAFT_2469 0.62 +0.1 2,499,074 + EX28DRAFT_2469 0.80 +0.4 2,499,100 - EX28DRAFT_2469 0.84 +0.7 2,499,187 - +0.8 2,499,187 - -0.1 2,499,187 - -0.7 2,499,189 + -0.4 2,499,190 - +0.5 2,499,211 - +0.3 2,499,235 - +0.2 2,499,237 + +0.2 2,499,252 + -0.7 2,499,337 - +0.6 2,499,345 + +0.7 2,499,346 - -0.2 2,499,361 + -0.3 2,499,361 + +0.4 2,499,361 + +0.1 2,499,362 - +0.3 2,499,415 - +0.3 2,499,653 - EX28DRAFT_2470 0.35 -0.0 2,499,676 - EX28DRAFT_2470 0.38 -0.1 2,499,676 - EX28DRAFT_2470 0.38 +0.7 2,499,676 - EX28DRAFT_2470 0.38 +0.0 2,499,676 - EX28DRAFT_2470 0.38 +0.4 2,499,676 - EX28DRAFT_2470 0.38 -0.3 2,499,702 + EX28DRAFT_2470 0.41 +0.3 2,499,702 + EX28DRAFT_2470 0.41 +0.1 2,499,740 - EX28DRAFT_2470 0.45 +0.3 2,499,817 + EX28DRAFT_2470 0.54 +0.1 2,499,817 + EX28DRAFT_2470 0.54 +0.8 2,499,974 - EX28DRAFT_2470 0.73 +0.2 2,499,978 + EX28DRAFT_2470 0.73 +0.8 2,500,124 + -0.0 2,500,124 + -0.3 2,500,124 + +0.1 2,500,124 + -0.3 2,500,125 - -0.0 2,500,125 - -0.2 2,500,183 + +0.3 2,500,184 - +0.3 2,500,188 - +0.5 2,500,193 + -0.3 2,500,193 + +0.1 2,500,194 - -0.2 2,500,249 - -0.0 2,500,290 + +0.3 2,500,543 + EX28DRAFT_2471 0.32 -0.3 2,500,544 - EX28DRAFT_2471 0.32 -0.6 2,500,672 - EX28DRAFT_2471 0.46 +0.8 2,500,672 - EX28DRAFT_2471 0.46 +0.3 2,500,908 - EX28DRAFT_2471 0.72 -0.3 2,501,005 + EX28DRAFT_2471 0.83 -0.2 2,501,006 - EX28DRAFT_2471 0.83 +0.1 2,501,006 - EX28DRAFT_2471 0.83 -1.6 2,501,025 + EX28DRAFT_2471 0.85 +0.2
Or see this region's nucleotide sequence