Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2415

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2414 and EX28DRAFT_2415 are separated by 76 nucleotidesEX28DRAFT_2415 and EX28DRAFT_2416 overlap by 4 nucleotidesEX28DRAFT_2416 and EX28DRAFT_2417 are separated by 105 nucleotides EX28DRAFT_2414: EX28DRAFT_2414 - Predicted membrane protein, at 2,436,336 to 2,438,318 _2414 EX28DRAFT_2415: EX28DRAFT_2415 - AraC-type DNA-binding domain-containing proteins, at 2,438,395 to 2,439,189 _2415 EX28DRAFT_2416: EX28DRAFT_2416 - 2-dehydropantoate 2-reductase, at 2,439,186 to 2,440,076 _2416 EX28DRAFT_2417: EX28DRAFT_2417 - carboxylate-amine ligase, YbdK family, at 2,440,182 to 2,441,303 _2417 Position (kb) 2438 2439 2440Strain fitness (log2 ratio) -1 0 1at 2437.649 kb on + strand, within EX28DRAFT_2414at 2437.649 kb on + strand, within EX28DRAFT_2414at 2437.650 kb on - strand, within EX28DRAFT_2414at 2437.650 kb on - strand, within EX28DRAFT_2414at 2437.722 kb on - strand, within EX28DRAFT_2414at 2437.774 kb on - strand, within EX28DRAFT_2414at 2437.816 kb on + strand, within EX28DRAFT_2414at 2437.816 kb on + strand, within EX28DRAFT_2414at 2437.817 kb on - strand, within EX28DRAFT_2414at 2438.001 kb on + strand, within EX28DRAFT_2414at 2438.002 kb on - strand, within EX28DRAFT_2414at 2438.002 kb on - strand, within EX28DRAFT_2414at 2438.042 kb on + strand, within EX28DRAFT_2414at 2438.156 kb on - strandat 2438.165 kb on + strandat 2438.166 kb on - strandat 2438.166 kb on - strandat 2438.209 kb on + strandat 2438.212 kb on + strandat 2438.213 kb on - strandat 2438.248 kb on + strandat 2438.248 kb on + strandat 2438.289 kb on - strandat 2438.289 kb on - strandat 2438.351 kb on - strandat 2438.378 kb on + strandat 2438.412 kb on + strandat 2438.413 kb on - strandat 2438.415 kb on + strandat 2438.422 kb on + strandat 2438.422 kb on + strandat 2438.423 kb on - strandat 2438.480 kb on - strand, within EX28DRAFT_2415at 2438.656 kb on + strand, within EX28DRAFT_2415at 2438.657 kb on - strand, within EX28DRAFT_2415at 2439.158 kb on - strandat 2439.449 kb on - strand, within EX28DRAFT_2416at 2439.910 kb on - strand, within EX28DRAFT_2416at 2439.954 kb on + strand, within EX28DRAFT_2416at 2439.955 kb on - strand, within EX28DRAFT_2416at 2440.112 kb on - strandat 2440.113 kb on + strandat 2440.114 kb on - strandat 2440.114 kb on - strandat 2440.148 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,437,649 + EX28DRAFT_2414 0.66 -0.2
2,437,649 + EX28DRAFT_2414 0.66 -0.1
2,437,650 - EX28DRAFT_2414 0.66 +0.7
2,437,650 - EX28DRAFT_2414 0.66 -0.2
2,437,722 - EX28DRAFT_2414 0.70 +0.3
2,437,774 - EX28DRAFT_2414 0.73 -0.3
2,437,816 + EX28DRAFT_2414 0.75 +1.1
2,437,816 + EX28DRAFT_2414 0.75 +0.7
2,437,817 - EX28DRAFT_2414 0.75 -0.1
2,438,001 + EX28DRAFT_2414 0.84 -0.3
2,438,002 - EX28DRAFT_2414 0.84 +0.2
2,438,002 - EX28DRAFT_2414 0.84 -0.4
2,438,042 + EX28DRAFT_2414 0.86 +0.8
2,438,156 - -0.1
2,438,165 + -0.2
2,438,166 - +0.6
2,438,166 - -0.1
2,438,209 + -0.0
2,438,212 + -0.1
2,438,213 - +0.2
2,438,248 + +0.0
2,438,248 + -0.0
2,438,289 - -0.3
2,438,289 - +0.1
2,438,351 - -0.1
2,438,378 + -0.1
2,438,412 + -0.3
2,438,413 - +0.1
2,438,415 + -0.4
2,438,422 + -0.1
2,438,422 + -0.2
2,438,423 - +0.3
2,438,480 - EX28DRAFT_2415 0.11 +0.5
2,438,656 + EX28DRAFT_2415 0.33 +0.4
2,438,657 - EX28DRAFT_2415 0.33 +0.5
2,439,158 - +0.0
2,439,449 - EX28DRAFT_2416 0.30 -0.1
2,439,910 - EX28DRAFT_2416 0.81 -0.6
2,439,954 + EX28DRAFT_2416 0.86 -0.3
2,439,955 - EX28DRAFT_2416 0.86 +0.6
2,440,112 - -0.1
2,440,113 + -1.1
2,440,114 - -0.1
2,440,114 - -0.2
2,440,148 + -0.1

Or see this region's nucleotide sequence