Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2170

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2168 and EX28DRAFT_2169 overlap by 4 nucleotidesEX28DRAFT_2169 and EX28DRAFT_2170 are separated by 183 nucleotidesEX28DRAFT_2170 and EX28DRAFT_2171 are separated by 283 nucleotides EX28DRAFT_2168: EX28DRAFT_2168 - Na+/H+ antiporter NhaD and related arsenite permeases, at 2,192,507 to 2,193,616 _2168 EX28DRAFT_2169: EX28DRAFT_2169 - iron (metal) dependent repressor, DtxR family, at 2,193,613 to 2,194,086 _2169 EX28DRAFT_2170: EX28DRAFT_2170 - hypothetical protein, at 2,194,270 to 2,194,398 _2170 EX28DRAFT_2171: EX28DRAFT_2171 - Predicted membrane-associated, metal-dependent hydrolase, at 2,194,682 to 2,196,265 _2171 Position (kb) 2194 2195Strain fitness (log2 ratio) -1 0 1 2at 2193.364 kb on + strand, within EX28DRAFT_2168at 2193.365 kb on - strand, within EX28DRAFT_2168at 2193.481 kb on + strand, within EX28DRAFT_2168at 2193.564 kb on - strandat 2193.564 kb on - strandat 2193.633 kb on - strandat 2193.636 kb on + strandat 2193.636 kb on + strandat 2193.862 kb on + strand, within EX28DRAFT_2169at 2193.909 kb on + strand, within EX28DRAFT_2169at 2193.966 kb on - strand, within EX28DRAFT_2169at 2193.966 kb on - strand, within EX28DRAFT_2169at 2193.966 kb on - strand, within EX28DRAFT_2169at 2193.966 kb on - strand, within EX28DRAFT_2169at 2194.089 kb on + strandat 2194.090 kb on - strandat 2194.142 kb on + strandat 2194.142 kb on + strandat 2194.150 kb on - strandat 2194.150 kb on - strandat 2194.190 kb on - strandat 2194.191 kb on + strandat 2194.196 kb on + strandat 2194.208 kb on + strandat 2194.216 kb on + strandat 2194.217 kb on - strandat 2194.220 kb on + strandat 2194.220 kb on + strandat 2194.220 kb on + strandat 2194.220 kb on + strandat 2194.221 kb on - strandat 2194.269 kb on + strandat 2194.270 kb on - strandat 2194.353 kb on + strand, within EX28DRAFT_2170at 2194.360 kb on - strand, within EX28DRAFT_2170at 2194.445 kb on + strandat 2194.467 kb on - strandat 2194.530 kb on + strandat 2194.533 kb on + strandat 2194.673 kb on + strandat 2194.681 kb on + strandat 2194.681 kb on + strandat 2194.681 kb on + strandat 2194.681 kb on + strandat 2194.682 kb on - strandat 2194.682 kb on - strandat 2194.690 kb on - strandat 2194.698 kb on + strandat 2194.698 kb on + strandat 2194.699 kb on - strandat 2194.699 kb on - strandat 2194.699 kb on - strandat 2194.699 kb on - strandat 2194.703 kb on - strandat 2194.749 kb on - strandat 2194.764 kb on + strandat 2194.765 kb on - strandat 2194.771 kb on + strandat 2194.904 kb on + strand, within EX28DRAFT_2171at 2194.904 kb on + strand, within EX28DRAFT_2171at 2194.905 kb on - strand, within EX28DRAFT_2171at 2194.946 kb on - strand, within EX28DRAFT_2171at 2194.946 kb on - strand, within EX28DRAFT_2171at 2195.019 kb on - strand, within EX28DRAFT_2171at 2195.096 kb on - strand, within EX28DRAFT_2171at 2195.106 kb on + strand, within EX28DRAFT_2171at 2195.106 kb on + strand, within EX28DRAFT_2171at 2195.158 kb on + strand, within EX28DRAFT_2171at 2195.159 kb on - strand, within EX28DRAFT_2171at 2195.236 kb on + strand, within EX28DRAFT_2171at 2195.237 kb on - strand, within EX28DRAFT_2171at 2195.239 kb on + strand, within EX28DRAFT_2171at 2195.239 kb on + strand, within EX28DRAFT_2171at 2195.240 kb on - strand, within EX28DRAFT_2171at 2195.333 kb on + strand, within EX28DRAFT_2171at 2195.333 kb on + strand, within EX28DRAFT_2171at 2195.333 kb on + strand, within EX28DRAFT_2171at 2195.333 kb on + strand, within EX28DRAFT_2171at 2195.333 kb on + strand, within EX28DRAFT_2171at 2195.333 kb on + strand, within EX28DRAFT_2171at 2195.333 kb on + strand, within EX28DRAFT_2171at 2195.333 kb on + strand, within EX28DRAFT_2171at 2195.334 kb on - strand, within EX28DRAFT_2171at 2195.334 kb on - strand, within EX28DRAFT_2171

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,193,364 + EX28DRAFT_2168 0.77 -1.3
2,193,365 - EX28DRAFT_2168 0.77 +0.7
2,193,481 + EX28DRAFT_2168 0.88 +0.6
2,193,564 - +0.3
2,193,564 - -0.2
2,193,633 - -0.6
2,193,636 + -0.1
2,193,636 + +0.0
2,193,862 + EX28DRAFT_2169 0.53 +0.3
2,193,909 + EX28DRAFT_2169 0.62 +0.1
2,193,966 - EX28DRAFT_2169 0.74 +0.0
2,193,966 - EX28DRAFT_2169 0.74 -1.1
2,193,966 - EX28DRAFT_2169 0.74 -0.9
2,193,966 - EX28DRAFT_2169 0.74 +0.2
2,194,089 + +0.7
2,194,090 - -0.6
2,194,142 + +0.9
2,194,142 + +1.5
2,194,150 - -0.4
2,194,150 - -0.1
2,194,190 - +0.3
2,194,191 + -0.0
2,194,196 + +0.0
2,194,208 + -0.1
2,194,216 + -0.1
2,194,217 - +0.0
2,194,220 + +0.1
2,194,220 + +1.4
2,194,220 + +0.3
2,194,220 + +0.1
2,194,221 - +0.2
2,194,269 + -0.3
2,194,270 - -0.2
2,194,353 + EX28DRAFT_2170 0.64 -0.2
2,194,360 - EX28DRAFT_2170 0.70 -1.2
2,194,445 + +0.4
2,194,467 - -0.0
2,194,530 + +0.2
2,194,533 + +0.2
2,194,673 + -0.5
2,194,681 + -0.2
2,194,681 + +0.1
2,194,681 + -0.3
2,194,681 + -0.1
2,194,682 - +0.2
2,194,682 - +0.3
2,194,690 - -0.2
2,194,698 + +2.3
2,194,698 + -0.7
2,194,699 - -0.0
2,194,699 - +0.3
2,194,699 - -0.3
2,194,699 - -0.8
2,194,703 - +0.7
2,194,749 - +0.2
2,194,764 + +0.2
2,194,765 - +0.3
2,194,771 + +0.4
2,194,904 + EX28DRAFT_2171 0.14 -0.4
2,194,904 + EX28DRAFT_2171 0.14 +0.2
2,194,905 - EX28DRAFT_2171 0.14 -0.2
2,194,946 - EX28DRAFT_2171 0.17 +0.7
2,194,946 - EX28DRAFT_2171 0.17 +0.5
2,195,019 - EX28DRAFT_2171 0.21 -1.7
2,195,096 - EX28DRAFT_2171 0.26 +0.5
2,195,106 + EX28DRAFT_2171 0.27 -0.6
2,195,106 + EX28DRAFT_2171 0.27 -0.0
2,195,158 + EX28DRAFT_2171 0.30 +0.4
2,195,159 - EX28DRAFT_2171 0.30 +0.5
2,195,236 + EX28DRAFT_2171 0.35 -0.3
2,195,237 - EX28DRAFT_2171 0.35 +0.8
2,195,239 + EX28DRAFT_2171 0.35 +2.1
2,195,239 + EX28DRAFT_2171 0.35 -0.5
2,195,240 - EX28DRAFT_2171 0.35 +0.9
2,195,333 + EX28DRAFT_2171 0.41 +0.8
2,195,333 + EX28DRAFT_2171 0.41 +1.6
2,195,333 + EX28DRAFT_2171 0.41 +1.9
2,195,333 + EX28DRAFT_2171 0.41 -0.2
2,195,333 + EX28DRAFT_2171 0.41 -0.2
2,195,333 + EX28DRAFT_2171 0.41 -0.0
2,195,333 + EX28DRAFT_2171 0.41 -0.1
2,195,333 + EX28DRAFT_2171 0.41 +0.2
2,195,334 - EX28DRAFT_2171 0.41 +0.1
2,195,334 - EX28DRAFT_2171 0.41 -0.2

Or see this region's nucleotide sequence