Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2168 and EX28DRAFT_2169 overlap by 4 nucleotides EX28DRAFT_2169 and EX28DRAFT_2170 are separated by 183 nucleotides EX28DRAFT_2170 and EX28DRAFT_2171 are separated by 283 nucleotides
EX28DRAFT_2168: EX28DRAFT_2168 - Na+/H+ antiporter NhaD and related arsenite permeases, at 2,192,507 to 2,193,616
_2168
EX28DRAFT_2169: EX28DRAFT_2169 - iron (metal) dependent repressor, DtxR family, at 2,193,613 to 2,194,086
_2169
EX28DRAFT_2170: EX28DRAFT_2170 - hypothetical protein, at 2,194,270 to 2,194,398
_2170
EX28DRAFT_2171: EX28DRAFT_2171 - Predicted membrane-associated, metal-dependent hydrolase, at 2,194,682 to 2,196,265
_2171
Position (kb)
2194
2195 Strain fitness (log2 ratio)
-1
0
1
2 at 2193.364 kb on + strand, within EX28DRAFT_2168 at 2193.365 kb on - strand, within EX28DRAFT_2168 at 2193.481 kb on + strand, within EX28DRAFT_2168 at 2193.564 kb on - strand at 2193.564 kb on - strand at 2193.633 kb on - strand at 2193.636 kb on + strand at 2193.636 kb on + strand at 2193.862 kb on + strand, within EX28DRAFT_2169 at 2193.909 kb on + strand, within EX28DRAFT_2169 at 2193.966 kb on - strand, within EX28DRAFT_2169 at 2193.966 kb on - strand, within EX28DRAFT_2169 at 2193.966 kb on - strand, within EX28DRAFT_2169 at 2193.966 kb on - strand, within EX28DRAFT_2169 at 2194.089 kb on + strand at 2194.090 kb on - strand at 2194.142 kb on + strand at 2194.142 kb on + strand at 2194.150 kb on - strand at 2194.150 kb on - strand at 2194.190 kb on - strand at 2194.191 kb on + strand at 2194.196 kb on + strand at 2194.208 kb on + strand at 2194.216 kb on + strand at 2194.217 kb on - strand at 2194.220 kb on + strand at 2194.220 kb on + strand at 2194.220 kb on + strand at 2194.220 kb on + strand at 2194.221 kb on - strand at 2194.269 kb on + strand at 2194.270 kb on - strand at 2194.353 kb on + strand, within EX28DRAFT_2170 at 2194.360 kb on - strand, within EX28DRAFT_2170 at 2194.445 kb on + strand at 2194.467 kb on - strand at 2194.530 kb on + strand at 2194.533 kb on + strand at 2194.673 kb on + strand at 2194.681 kb on + strand at 2194.681 kb on + strand at 2194.681 kb on + strand at 2194.681 kb on + strand at 2194.682 kb on - strand at 2194.682 kb on - strand at 2194.690 kb on - strand at 2194.698 kb on + strand at 2194.698 kb on + strand at 2194.699 kb on - strand at 2194.699 kb on - strand at 2194.699 kb on - strand at 2194.699 kb on - strand at 2194.703 kb on - strand at 2194.749 kb on - strand at 2194.764 kb on + strand at 2194.765 kb on - strand at 2194.771 kb on + strand at 2194.904 kb on + strand, within EX28DRAFT_2171 at 2194.904 kb on + strand, within EX28DRAFT_2171 at 2194.905 kb on - strand, within EX28DRAFT_2171 at 2194.946 kb on - strand, within EX28DRAFT_2171 at 2194.946 kb on - strand, within EX28DRAFT_2171 at 2195.019 kb on - strand, within EX28DRAFT_2171 at 2195.096 kb on - strand, within EX28DRAFT_2171 at 2195.106 kb on + strand, within EX28DRAFT_2171 at 2195.106 kb on + strand, within EX28DRAFT_2171 at 2195.158 kb on + strand, within EX28DRAFT_2171 at 2195.159 kb on - strand, within EX28DRAFT_2171 at 2195.236 kb on + strand, within EX28DRAFT_2171 at 2195.237 kb on - strand, within EX28DRAFT_2171 at 2195.239 kb on + strand, within EX28DRAFT_2171 at 2195.239 kb on + strand, within EX28DRAFT_2171 at 2195.240 kb on - strand, within EX28DRAFT_2171 at 2195.333 kb on + strand, within EX28DRAFT_2171 at 2195.333 kb on + strand, within EX28DRAFT_2171 at 2195.333 kb on + strand, within EX28DRAFT_2171 at 2195.333 kb on + strand, within EX28DRAFT_2171 at 2195.333 kb on + strand, within EX28DRAFT_2171 at 2195.333 kb on + strand, within EX28DRAFT_2171 at 2195.333 kb on + strand, within EX28DRAFT_2171 at 2195.333 kb on + strand, within EX28DRAFT_2171 at 2195.334 kb on - strand, within EX28DRAFT_2171 at 2195.334 kb on - strand, within EX28DRAFT_2171
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,193,364 + EX28DRAFT_2168 0.77 -1.3 2,193,365 - EX28DRAFT_2168 0.77 +0.7 2,193,481 + EX28DRAFT_2168 0.88 +0.6 2,193,564 - +0.3 2,193,564 - -0.2 2,193,633 - -0.6 2,193,636 + -0.1 2,193,636 + +0.0 2,193,862 + EX28DRAFT_2169 0.53 +0.3 2,193,909 + EX28DRAFT_2169 0.62 +0.1 2,193,966 - EX28DRAFT_2169 0.74 +0.0 2,193,966 - EX28DRAFT_2169 0.74 -1.1 2,193,966 - EX28DRAFT_2169 0.74 -0.9 2,193,966 - EX28DRAFT_2169 0.74 +0.2 2,194,089 + +0.7 2,194,090 - -0.6 2,194,142 + +0.9 2,194,142 + +1.5 2,194,150 - -0.4 2,194,150 - -0.1 2,194,190 - +0.3 2,194,191 + -0.0 2,194,196 + +0.0 2,194,208 + -0.1 2,194,216 + -0.1 2,194,217 - +0.0 2,194,220 + +0.1 2,194,220 + +1.4 2,194,220 + +0.3 2,194,220 + +0.1 2,194,221 - +0.2 2,194,269 + -0.3 2,194,270 - -0.2 2,194,353 + EX28DRAFT_2170 0.64 -0.2 2,194,360 - EX28DRAFT_2170 0.70 -1.2 2,194,445 + +0.4 2,194,467 - -0.0 2,194,530 + +0.2 2,194,533 + +0.2 2,194,673 + -0.5 2,194,681 + -0.2 2,194,681 + +0.1 2,194,681 + -0.3 2,194,681 + -0.1 2,194,682 - +0.2 2,194,682 - +0.3 2,194,690 - -0.2 2,194,698 + +2.3 2,194,698 + -0.7 2,194,699 - -0.0 2,194,699 - +0.3 2,194,699 - -0.3 2,194,699 - -0.8 2,194,703 - +0.7 2,194,749 - +0.2 2,194,764 + +0.2 2,194,765 - +0.3 2,194,771 + +0.4 2,194,904 + EX28DRAFT_2171 0.14 -0.4 2,194,904 + EX28DRAFT_2171 0.14 +0.2 2,194,905 - EX28DRAFT_2171 0.14 -0.2 2,194,946 - EX28DRAFT_2171 0.17 +0.7 2,194,946 - EX28DRAFT_2171 0.17 +0.5 2,195,019 - EX28DRAFT_2171 0.21 -1.7 2,195,096 - EX28DRAFT_2171 0.26 +0.5 2,195,106 + EX28DRAFT_2171 0.27 -0.6 2,195,106 + EX28DRAFT_2171 0.27 -0.0 2,195,158 + EX28DRAFT_2171 0.30 +0.4 2,195,159 - EX28DRAFT_2171 0.30 +0.5 2,195,236 + EX28DRAFT_2171 0.35 -0.3 2,195,237 - EX28DRAFT_2171 0.35 +0.8 2,195,239 + EX28DRAFT_2171 0.35 +2.1 2,195,239 + EX28DRAFT_2171 0.35 -0.5 2,195,240 - EX28DRAFT_2171 0.35 +0.9 2,195,333 + EX28DRAFT_2171 0.41 +0.8 2,195,333 + EX28DRAFT_2171 0.41 +1.6 2,195,333 + EX28DRAFT_2171 0.41 +1.9 2,195,333 + EX28DRAFT_2171 0.41 -0.2 2,195,333 + EX28DRAFT_2171 0.41 -0.2 2,195,333 + EX28DRAFT_2171 0.41 -0.0 2,195,333 + EX28DRAFT_2171 0.41 -0.1 2,195,333 + EX28DRAFT_2171 0.41 +0.2 2,195,334 - EX28DRAFT_2171 0.41 +0.1 2,195,334 - EX28DRAFT_2171 0.41 -0.2
Or see this region's nucleotide sequence