Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1763

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1760 and EX28DRAFT_1761 are separated by 75 nucleotidesEX28DRAFT_1761 and EX28DRAFT_1762 overlap by 41 nucleotidesEX28DRAFT_1762 and EX28DRAFT_1763 are separated by 228 nucleotidesEX28DRAFT_1763 and EX28DRAFT_1764 are separated by 71 nucleotides EX28DRAFT_1760: EX28DRAFT_1760 - Uncharacterized conserved protein, at 1,775,510 to 1,776,079 _1760 EX28DRAFT_1761: EX28DRAFT_1761 - NUDIX domain, at 1,776,155 to 1,776,571 _1761 EX28DRAFT_1762: EX28DRAFT_1762 - Protein of unknown function (DUF1496), at 1,776,531 to 1,776,809 _1762 EX28DRAFT_1763: EX28DRAFT_1763 - Glutamate dehydrogenase/leucine dehydrogenase, at 1,777,038 to 1,778,381 _1763 EX28DRAFT_1764: EX28DRAFT_1764 - DNA topoisomerase III, bacteria and conjugative plasmid, at 1,778,453 to 1,780,360 _1764 Position (kb) 1777 1778 1779Strain fitness (log2 ratio) -3 -2 -1 0 1at 1776.119 kb on + strandat 1776.122 kb on + strandat 1776.205 kb on + strand, within EX28DRAFT_1761at 1776.206 kb on - strand, within EX28DRAFT_1761at 1776.206 kb on - strand, within EX28DRAFT_1761at 1776.305 kb on - strand, within EX28DRAFT_1761at 1776.353 kb on + strand, within EX28DRAFT_1761at 1776.354 kb on - strand, within EX28DRAFT_1761at 1776.354 kb on - strand, within EX28DRAFT_1761at 1776.469 kb on + strand, within EX28DRAFT_1761at 1776.652 kb on + strand, within EX28DRAFT_1762at 1776.656 kb on + strand, within EX28DRAFT_1762at 1776.656 kb on + strand, within EX28DRAFT_1762at 1776.656 kb on + strand, within EX28DRAFT_1762at 1776.656 kb on + strand, within EX28DRAFT_1762at 1776.656 kb on + strand, within EX28DRAFT_1762at 1776.656 kb on + strand, within EX28DRAFT_1762at 1776.656 kb on + strand, within EX28DRAFT_1762at 1776.657 kb on - strand, within EX28DRAFT_1762at 1776.658 kb on - strand, within EX28DRAFT_1762at 1776.668 kb on + strand, within EX28DRAFT_1762at 1776.784 kb on - strandat 1776.795 kb on + strandat 1776.796 kb on - strandat 1776.796 kb on - strandat 1776.799 kb on + strandat 1776.825 kb on + strandat 1776.826 kb on - strandat 1776.836 kb on + strandat 1776.843 kb on + strandat 1776.844 kb on - strandat 1776.845 kb on + strandat 1776.875 kb on + strandat 1776.969 kb on + strandat 1777.001 kb on + strandat 1777.001 kb on + strandat 1777.002 kb on - strandat 1777.002 kb on - strandat 1777.015 kb on + strandat 1777.032 kb on - strandat 1777.032 kb on - strandat 1777.033 kb on + strandat 1777.034 kb on - strandat 1777.034 kb on - strandat 1777.131 kb on - strandat 1777.131 kb on - strandat 1777.258 kb on + strand, within EX28DRAFT_1763at 1777.383 kb on - strand, within EX28DRAFT_1763at 1778.310 kb on + strandat 1778.311 kb on - strandat 1778.379 kb on + strandat 1778.379 kb on + strandat 1778.380 kb on - strandat 1778.562 kb on + strandat 1778.619 kb on - strandat 1778.720 kb on - strand, within EX28DRAFT_1764at 1778.722 kb on - strand, within EX28DRAFT_1764at 1778.722 kb on - strand, within EX28DRAFT_1764at 1778.722 kb on - strand, within EX28DRAFT_1764at 1778.722 kb on - strand, within EX28DRAFT_1764at 1779.004 kb on + strand, within EX28DRAFT_1764at 1779.064 kb on + strand, within EX28DRAFT_1764at 1779.065 kb on - strand, within EX28DRAFT_1764at 1779.104 kb on + strand, within EX28DRAFT_1764at 1779.132 kb on + strand, within EX28DRAFT_1764at 1779.153 kb on + strand, within EX28DRAFT_1764at 1779.379 kb on - strand, within EX28DRAFT_1764at 1779.379 kb on - strand, within EX28DRAFT_1764at 1779.379 kb on - strand, within EX28DRAFT_1764at 1779.379 kb on - strand, within EX28DRAFT_1764at 1779.379 kb on - strand, within EX28DRAFT_1764

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,776,119 + -1.6
1,776,122 + +0.1
1,776,205 + EX28DRAFT_1761 0.12 -0.1
1,776,206 - EX28DRAFT_1761 0.12 -0.6
1,776,206 - EX28DRAFT_1761 0.12 -0.9
1,776,305 - EX28DRAFT_1761 0.36 +0.2
1,776,353 + EX28DRAFT_1761 0.47 -0.5
1,776,354 - EX28DRAFT_1761 0.48 +0.7
1,776,354 - EX28DRAFT_1761 0.48 -0.0
1,776,469 + EX28DRAFT_1761 0.75 -0.1
1,776,652 + EX28DRAFT_1762 0.43 +0.1
1,776,656 + EX28DRAFT_1762 0.45 +0.7
1,776,656 + EX28DRAFT_1762 0.45 +0.0
1,776,656 + EX28DRAFT_1762 0.45 +0.4
1,776,656 + EX28DRAFT_1762 0.45 +0.2
1,776,656 + EX28DRAFT_1762 0.45 +0.2
1,776,656 + EX28DRAFT_1762 0.45 +0.2
1,776,656 + EX28DRAFT_1762 0.45 -0.1
1,776,657 - EX28DRAFT_1762 0.45 +0.3
1,776,658 - EX28DRAFT_1762 0.46 -0.7
1,776,668 + EX28DRAFT_1762 0.49 +0.4
1,776,784 - +0.5
1,776,795 + -1.6
1,776,796 - +0.1
1,776,796 - -0.0
1,776,799 + +0.0
1,776,825 + +0.5
1,776,826 - +0.3
1,776,836 + +1.7
1,776,843 + +0.3
1,776,844 - -0.3
1,776,845 + -0.6
1,776,875 + +0.0
1,776,969 + -0.0
1,777,001 + -0.3
1,777,001 + -0.0
1,777,002 - +0.6
1,777,002 - -0.3
1,777,015 + +0.3
1,777,032 - -0.1
1,777,032 - -0.8
1,777,033 + -0.8
1,777,034 - +0.3
1,777,034 - +0.5
1,777,131 - -0.0
1,777,131 - -0.9
1,777,258 + EX28DRAFT_1763 0.16 -0.6
1,777,383 - EX28DRAFT_1763 0.26 -2.3
1,778,310 + -3.0
1,778,311 - +0.4
1,778,379 + -0.1
1,778,379 + -0.0
1,778,380 - +0.6
1,778,562 + +0.0
1,778,619 - -0.7
1,778,720 - EX28DRAFT_1764 0.14 +0.7
1,778,722 - EX28DRAFT_1764 0.14 -0.1
1,778,722 - EX28DRAFT_1764 0.14 +0.2
1,778,722 - EX28DRAFT_1764 0.14 -0.5
1,778,722 - EX28DRAFT_1764 0.14 -0.1
1,779,004 + EX28DRAFT_1764 0.29 -0.5
1,779,064 + EX28DRAFT_1764 0.32 -0.3
1,779,065 - EX28DRAFT_1764 0.32 -0.5
1,779,104 + EX28DRAFT_1764 0.34 +0.8
1,779,132 + EX28DRAFT_1764 0.36 -1.7
1,779,153 + EX28DRAFT_1764 0.37 -0.4
1,779,379 - EX28DRAFT_1764 0.49 +0.2
1,779,379 - EX28DRAFT_1764 0.49 +0.4
1,779,379 - EX28DRAFT_1764 0.49 +0.3
1,779,379 - EX28DRAFT_1764 0.49 -0.3
1,779,379 - EX28DRAFT_1764 0.49 -0.7

Or see this region's nucleotide sequence