Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1757

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1756 and EX28DRAFT_1757 overlap by 1 nucleotidesEX28DRAFT_1757 and EX28DRAFT_1758 are separated by 73 nucleotides EX28DRAFT_1756: EX28DRAFT_1756 - ABC-type uncharacterized transport system, permease component, at 1,771,373 to 1,772,902 _1756 EX28DRAFT_1757: EX28DRAFT_1757 - ABC-type uncharacterized transport system, ATPase component, at 1,772,902 to 1,773,522 _1757 EX28DRAFT_1758: EX28DRAFT_1758 - Rhodanese-related sulfurtransferase, at 1,773,596 to 1,774,903 _1758 Position (kb) 1772 1773 1774Strain fitness (log2 ratio) -1 0 1at 1772.111 kb on - strand, within EX28DRAFT_1756at 1772.456 kb on + strand, within EX28DRAFT_1756at 1772.492 kb on + strand, within EX28DRAFT_1756at 1772.631 kb on + strand, within EX28DRAFT_1756at 1772.708 kb on + strand, within EX28DRAFT_1756at 1772.708 kb on + strand, within EX28DRAFT_1756at 1772.708 kb on + strand, within EX28DRAFT_1756at 1772.709 kb on - strand, within EX28DRAFT_1756at 1772.820 kb on + strandat 1772.912 kb on + strandat 1773.416 kb on + strand, within EX28DRAFT_1757at 1773.417 kb on - strand, within EX28DRAFT_1757at 1773.417 kb on - strand, within EX28DRAFT_1757at 1773.576 kb on + strandat 1773.577 kb on - strandat 1773.747 kb on - strand, within EX28DRAFT_1758at 1773.747 kb on - strand, within EX28DRAFT_1758at 1773.747 kb on - strand, within EX28DRAFT_1758at 1773.874 kb on + strand, within EX28DRAFT_1758at 1773.875 kb on - strand, within EX28DRAFT_1758at 1773.875 kb on - strand, within EX28DRAFT_1758at 1774.207 kb on + strand, within EX28DRAFT_1758at 1774.328 kb on + strand, within EX28DRAFT_1758at 1774.347 kb on + strand, within EX28DRAFT_1758at 1774.347 kb on + strand, within EX28DRAFT_1758

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
1,772,111 - EX28DRAFT_1756 0.48 +0.6
1,772,456 + EX28DRAFT_1756 0.71 +0.1
1,772,492 + EX28DRAFT_1756 0.73 +0.5
1,772,631 + EX28DRAFT_1756 0.82 -0.6
1,772,708 + EX28DRAFT_1756 0.87 -0.3
1,772,708 + EX28DRAFT_1756 0.87 +0.1
1,772,708 + EX28DRAFT_1756 0.87 -0.4
1,772,709 - EX28DRAFT_1756 0.87 -0.6
1,772,820 + +0.5
1,772,912 + +0.2
1,773,416 + EX28DRAFT_1757 0.83 +0.6
1,773,417 - EX28DRAFT_1757 0.83 -0.4
1,773,417 - EX28DRAFT_1757 0.83 +0.5
1,773,576 + +0.2
1,773,577 - -0.4
1,773,747 - EX28DRAFT_1758 0.12 -0.3
1,773,747 - EX28DRAFT_1758 0.12 -0.6
1,773,747 - EX28DRAFT_1758 0.12 -0.2
1,773,874 + EX28DRAFT_1758 0.21 +1.0
1,773,875 - EX28DRAFT_1758 0.21 +0.6
1,773,875 - EX28DRAFT_1758 0.21 +0.1
1,774,207 + EX28DRAFT_1758 0.47 -0.1
1,774,328 + EX28DRAFT_1758 0.56 +0.2
1,774,347 + EX28DRAFT_1758 0.57 +0.3
1,774,347 + EX28DRAFT_1758 0.57 +0.8

Or see this region's nucleotide sequence