Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1547 and EX28DRAFT_1548 overlap by 4 nucleotides EX28DRAFT_1548 and EX28DRAFT_1549 are separated by 92 nucleotides EX28DRAFT_1549 and EX28DRAFT_1550 are separated by 253 nucleotides EX28DRAFT_1550 and EX28DRAFT_1551 are separated by 450 nucleotides
EX28DRAFT_1547: EX28DRAFT_1547 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,563,644 to 1,564,366
_1547
EX28DRAFT_1548: EX28DRAFT_1548 - Uncharacterized membrane protein required for alginate biosynthesis, at 1,564,363 to 1,564,698
_1548
EX28DRAFT_1549: EX28DRAFT_1549 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,564,791 to 1,565,543
_1549
EX28DRAFT_1550: EX28DRAFT_1550 - hypothetical protein, at 1,565,797 to 1,566,057
_1550
EX28DRAFT_1551: EX28DRAFT_1551 - hypothetical protein, at 1,566,508 to 1,566,963
_1551
Position (kb)
1564
1565
1566 Strain fitness (log2 ratio)
-2
-1
0
1 at 1564.046 kb on - strand, within EX28DRAFT_1547 at 1564.298 kb on + strand at 1564.299 kb on - strand at 1564.316 kb on + strand at 1564.316 kb on + strand at 1564.391 kb on - strand at 1564.484 kb on + strand, within EX28DRAFT_1548 at 1564.503 kb on + strand, within EX28DRAFT_1548 at 1564.530 kb on + strand, within EX28DRAFT_1548 at 1564.566 kb on + strand, within EX28DRAFT_1548 at 1564.567 kb on - strand, within EX28DRAFT_1548 at 1564.567 kb on - strand, within EX28DRAFT_1548 at 1564.567 kb on - strand, within EX28DRAFT_1548 at 1564.567 kb on - strand, within EX28DRAFT_1548 at 1564.568 kb on + strand, within EX28DRAFT_1548 at 1564.568 kb on + strand, within EX28DRAFT_1548 at 1564.569 kb on - strand, within EX28DRAFT_1548 at 1564.618 kb on - strand, within EX28DRAFT_1548 at 1564.619 kb on + strand, within EX28DRAFT_1548 at 1564.619 kb on + strand, within EX28DRAFT_1548 at 1564.655 kb on - strand, within EX28DRAFT_1548 at 1564.655 kb on - strand, within EX28DRAFT_1548 at 1564.683 kb on + strand at 1564.728 kb on - strand at 1564.794 kb on + strand at 1564.794 kb on + strand at 1564.795 kb on - strand at 1564.795 kb on - strand at 1564.795 kb on - strand at 1564.795 kb on - strand at 1564.795 kb on - strand at 1564.826 kb on + strand at 1564.827 kb on - strand at 1564.842 kb on + strand at 1564.843 kb on - strand at 1564.901 kb on + strand, within EX28DRAFT_1549 at 1565.048 kb on + strand, within EX28DRAFT_1549 at 1565.118 kb on + strand, within EX28DRAFT_1549 at 1565.119 kb on - strand, within EX28DRAFT_1549 at 1565.648 kb on - strand at 1565.672 kb on - strand at 1565.672 kb on - strand at 1565.783 kb on + strand at 1565.784 kb on - strand at 1565.800 kb on + strand at 1565.800 kb on + strand at 1565.800 kb on + strand at 1565.801 kb on - strand at 1565.801 kb on - strand at 1565.801 kb on - strand at 1565.801 kb on - strand at 1565.801 kb on - strand at 1565.801 kb on - strand at 1565.801 kb on - strand at 1565.801 kb on - strand at 1565.803 kb on - strand at 1565.807 kb on - strand at 1565.807 kb on - strand at 1565.807 kb on - strand at 1565.816 kb on + strand at 1565.816 kb on + strand at 1565.952 kb on - strand, within EX28DRAFT_1550 at 1565.952 kb on - strand, within EX28DRAFT_1550 at 1565.952 kb on - strand, within EX28DRAFT_1550 at 1565.980 kb on + strand, within EX28DRAFT_1550 at 1565.982 kb on + strand, within EX28DRAFT_1550 at 1566.055 kb on + strand at 1566.056 kb on - strand at 1566.097 kb on + strand at 1566.097 kb on + strand at 1566.097 kb on + strand at 1566.098 kb on - strand at 1566.098 kb on - strand at 1566.099 kb on + strand at 1566.398 kb on + strand at 1566.398 kb on + strand at 1566.399 kb on - strand at 1566.399 kb on - strand at 1566.418 kb on + strand at 1566.418 kb on + strand at 1566.425 kb on + strand at 1566.472 kb on + strand at 1566.472 kb on + strand at 1566.518 kb on + strand at 1566.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,564,046 - EX28DRAFT_1547 0.56 -0.3 1,564,298 + -0.7 1,564,299 - -0.3 1,564,316 + -0.2 1,564,316 + -0.5 1,564,391 - +0.6 1,564,484 + EX28DRAFT_1548 0.36 +0.4 1,564,503 + EX28DRAFT_1548 0.42 +0.6 1,564,530 + EX28DRAFT_1548 0.50 +0.2 1,564,566 + EX28DRAFT_1548 0.60 -0.6 1,564,567 - EX28DRAFT_1548 0.61 -0.7 1,564,567 - EX28DRAFT_1548 0.61 -0.4 1,564,567 - EX28DRAFT_1548 0.61 +0.0 1,564,567 - EX28DRAFT_1548 0.61 -0.8 1,564,568 + EX28DRAFT_1548 0.61 +0.5 1,564,568 + EX28DRAFT_1548 0.61 +0.0 1,564,569 - EX28DRAFT_1548 0.61 -1.3 1,564,618 - EX28DRAFT_1548 0.76 -0.1 1,564,619 + EX28DRAFT_1548 0.76 -0.3 1,564,619 + EX28DRAFT_1548 0.76 +1.0 1,564,655 - EX28DRAFT_1548 0.87 +0.3 1,564,655 - EX28DRAFT_1548 0.87 -0.7 1,564,683 + -0.4 1,564,728 - -0.2 1,564,794 + +0.3 1,564,794 + -0.3 1,564,795 - -0.5 1,564,795 - +0.0 1,564,795 - -0.1 1,564,795 - -1.2 1,564,795 - -0.1 1,564,826 + -0.8 1,564,827 - +0.0 1,564,842 + -1.3 1,564,843 - -0.3 1,564,901 + EX28DRAFT_1549 0.15 -0.2 1,565,048 + EX28DRAFT_1549 0.34 -0.9 1,565,118 + EX28DRAFT_1549 0.43 -0.5 1,565,119 - EX28DRAFT_1549 0.44 -0.6 1,565,648 - +0.2 1,565,672 - +0.6 1,565,672 - +0.1 1,565,783 + +0.7 1,565,784 - -0.0 1,565,800 + +0.9 1,565,800 + +0.9 1,565,800 + -0.2 1,565,801 - +0.1 1,565,801 - +0.3 1,565,801 - -0.3 1,565,801 - +0.3 1,565,801 - +0.0 1,565,801 - +0.0 1,565,801 - -0.2 1,565,801 - +0.5 1,565,803 - -0.1 1,565,807 - +1.1 1,565,807 - -0.3 1,565,807 - +0.0 1,565,816 + +0.1 1,565,816 + +0.4 1,565,952 - EX28DRAFT_1550 0.59 -0.1 1,565,952 - EX28DRAFT_1550 0.59 +0.6 1,565,952 - EX28DRAFT_1550 0.59 +0.3 1,565,980 + EX28DRAFT_1550 0.70 +0.5 1,565,982 + EX28DRAFT_1550 0.71 +0.1 1,566,055 + -0.6 1,566,056 - -0.2 1,566,097 + +0.7 1,566,097 + -0.3 1,566,097 + +0.3 1,566,098 - +0.7 1,566,098 - +0.5 1,566,099 + -1.8 1,566,398 + +0.0 1,566,398 + -0.4 1,566,399 - +0.3 1,566,399 - -0.1 1,566,418 + -0.0 1,566,418 + -0.4 1,566,425 + +0.2 1,566,472 + -0.5 1,566,472 + +0.0 1,566,518 + -0.8 1,566,519 - -1.3
Or see this region's nucleotide sequence