Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1549

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1547 and EX28DRAFT_1548 overlap by 4 nucleotidesEX28DRAFT_1548 and EX28DRAFT_1549 are separated by 92 nucleotidesEX28DRAFT_1549 and EX28DRAFT_1550 are separated by 253 nucleotidesEX28DRAFT_1550 and EX28DRAFT_1551 are separated by 450 nucleotides EX28DRAFT_1547: EX28DRAFT_1547 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,563,644 to 1,564,366 _1547 EX28DRAFT_1548: EX28DRAFT_1548 - Uncharacterized membrane protein required for alginate biosynthesis, at 1,564,363 to 1,564,698 _1548 EX28DRAFT_1549: EX28DRAFT_1549 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,564,791 to 1,565,543 _1549 EX28DRAFT_1550: EX28DRAFT_1550 - hypothetical protein, at 1,565,797 to 1,566,057 _1550 EX28DRAFT_1551: EX28DRAFT_1551 - hypothetical protein, at 1,566,508 to 1,566,963 _1551 Position (kb) 1564 1565 1566Strain fitness (log2 ratio) -2 -1 0 1at 1564.046 kb on - strand, within EX28DRAFT_1547at 1564.298 kb on + strandat 1564.299 kb on - strandat 1564.316 kb on + strandat 1564.316 kb on + strandat 1564.391 kb on - strandat 1564.484 kb on + strand, within EX28DRAFT_1548at 1564.503 kb on + strand, within EX28DRAFT_1548at 1564.530 kb on + strand, within EX28DRAFT_1548at 1564.566 kb on + strand, within EX28DRAFT_1548at 1564.567 kb on - strand, within EX28DRAFT_1548at 1564.567 kb on - strand, within EX28DRAFT_1548at 1564.567 kb on - strand, within EX28DRAFT_1548at 1564.567 kb on - strand, within EX28DRAFT_1548at 1564.568 kb on + strand, within EX28DRAFT_1548at 1564.568 kb on + strand, within EX28DRAFT_1548at 1564.569 kb on - strand, within EX28DRAFT_1548at 1564.618 kb on - strand, within EX28DRAFT_1548at 1564.619 kb on + strand, within EX28DRAFT_1548at 1564.619 kb on + strand, within EX28DRAFT_1548at 1564.655 kb on - strand, within EX28DRAFT_1548at 1564.655 kb on - strand, within EX28DRAFT_1548at 1564.683 kb on + strandat 1564.728 kb on - strandat 1564.794 kb on + strandat 1564.794 kb on + strandat 1564.795 kb on - strandat 1564.795 kb on - strandat 1564.795 kb on - strandat 1564.795 kb on - strandat 1564.795 kb on - strandat 1564.826 kb on + strandat 1564.827 kb on - strandat 1564.842 kb on + strandat 1564.843 kb on - strandat 1564.901 kb on + strand, within EX28DRAFT_1549at 1565.048 kb on + strand, within EX28DRAFT_1549at 1565.118 kb on + strand, within EX28DRAFT_1549at 1565.119 kb on - strand, within EX28DRAFT_1549at 1565.648 kb on - strandat 1565.672 kb on - strandat 1565.672 kb on - strandat 1565.783 kb on + strandat 1565.784 kb on - strandat 1565.800 kb on + strandat 1565.800 kb on + strandat 1565.800 kb on + strandat 1565.801 kb on - strandat 1565.801 kb on - strandat 1565.801 kb on - strandat 1565.801 kb on - strandat 1565.801 kb on - strandat 1565.801 kb on - strandat 1565.801 kb on - strandat 1565.801 kb on - strandat 1565.803 kb on - strandat 1565.807 kb on - strandat 1565.807 kb on - strandat 1565.807 kb on - strandat 1565.816 kb on + strandat 1565.816 kb on + strandat 1565.952 kb on - strand, within EX28DRAFT_1550at 1565.952 kb on - strand, within EX28DRAFT_1550at 1565.952 kb on - strand, within EX28DRAFT_1550at 1565.980 kb on + strand, within EX28DRAFT_1550at 1565.982 kb on + strand, within EX28DRAFT_1550at 1566.055 kb on + strandat 1566.056 kb on - strandat 1566.097 kb on + strandat 1566.097 kb on + strandat 1566.097 kb on + strandat 1566.098 kb on - strandat 1566.098 kb on - strandat 1566.099 kb on + strandat 1566.398 kb on + strandat 1566.398 kb on + strandat 1566.399 kb on - strandat 1566.399 kb on - strandat 1566.418 kb on + strandat 1566.418 kb on + strandat 1566.425 kb on + strandat 1566.472 kb on + strandat 1566.472 kb on + strandat 1566.518 kb on + strandat 1566.519 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,564,046 - EX28DRAFT_1547 0.56 -0.3
1,564,298 + -0.7
1,564,299 - -0.3
1,564,316 + -0.2
1,564,316 + -0.5
1,564,391 - +0.6
1,564,484 + EX28DRAFT_1548 0.36 +0.4
1,564,503 + EX28DRAFT_1548 0.42 +0.6
1,564,530 + EX28DRAFT_1548 0.50 +0.2
1,564,566 + EX28DRAFT_1548 0.60 -0.6
1,564,567 - EX28DRAFT_1548 0.61 -0.7
1,564,567 - EX28DRAFT_1548 0.61 -0.4
1,564,567 - EX28DRAFT_1548 0.61 +0.0
1,564,567 - EX28DRAFT_1548 0.61 -0.8
1,564,568 + EX28DRAFT_1548 0.61 +0.5
1,564,568 + EX28DRAFT_1548 0.61 +0.0
1,564,569 - EX28DRAFT_1548 0.61 -1.3
1,564,618 - EX28DRAFT_1548 0.76 -0.1
1,564,619 + EX28DRAFT_1548 0.76 -0.3
1,564,619 + EX28DRAFT_1548 0.76 +1.0
1,564,655 - EX28DRAFT_1548 0.87 +0.3
1,564,655 - EX28DRAFT_1548 0.87 -0.7
1,564,683 + -0.4
1,564,728 - -0.2
1,564,794 + +0.3
1,564,794 + -0.3
1,564,795 - -0.5
1,564,795 - +0.0
1,564,795 - -0.1
1,564,795 - -1.2
1,564,795 - -0.1
1,564,826 + -0.8
1,564,827 - +0.0
1,564,842 + -1.3
1,564,843 - -0.3
1,564,901 + EX28DRAFT_1549 0.15 -0.2
1,565,048 + EX28DRAFT_1549 0.34 -0.9
1,565,118 + EX28DRAFT_1549 0.43 -0.5
1,565,119 - EX28DRAFT_1549 0.44 -0.6
1,565,648 - +0.2
1,565,672 - +0.6
1,565,672 - +0.1
1,565,783 + +0.7
1,565,784 - -0.0
1,565,800 + +0.9
1,565,800 + +0.9
1,565,800 + -0.2
1,565,801 - +0.1
1,565,801 - +0.3
1,565,801 - -0.3
1,565,801 - +0.3
1,565,801 - +0.0
1,565,801 - +0.0
1,565,801 - -0.2
1,565,801 - +0.5
1,565,803 - -0.1
1,565,807 - +1.1
1,565,807 - -0.3
1,565,807 - +0.0
1,565,816 + +0.1
1,565,816 + +0.4
1,565,952 - EX28DRAFT_1550 0.59 -0.1
1,565,952 - EX28DRAFT_1550 0.59 +0.6
1,565,952 - EX28DRAFT_1550 0.59 +0.3
1,565,980 + EX28DRAFT_1550 0.70 +0.5
1,565,982 + EX28DRAFT_1550 0.71 +0.1
1,566,055 + -0.6
1,566,056 - -0.2
1,566,097 + +0.7
1,566,097 + -0.3
1,566,097 + +0.3
1,566,098 - +0.7
1,566,098 - +0.5
1,566,099 + -1.8
1,566,398 + +0.0
1,566,398 + -0.4
1,566,399 - +0.3
1,566,399 - -0.1
1,566,418 + -0.0
1,566,418 + -0.4
1,566,425 + +0.2
1,566,472 + -0.5
1,566,472 + +0.0
1,566,518 + -0.8
1,566,519 - -1.3

Or see this region's nucleotide sequence