Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1353

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1352 and EX28DRAFT_1353 are separated by 158 nucleotidesEX28DRAFT_1353 and EX28DRAFT_1354 are separated by 22 nucleotides EX28DRAFT_1352: EX28DRAFT_1352 - Arabinose efflux permease, at 1,366,388 to 1,367,707 _1352 EX28DRAFT_1353: EX28DRAFT_1353 - Major Facilitator Superfamily, at 1,367,866 to 1,369,518 _1353 EX28DRAFT_1354: EX28DRAFT_1354 - Multidrug resistance efflux pump, at 1,369,541 to 1,370,623 _1354 Position (kb) 1367 1368 1369 1370Strain fitness (log2 ratio) -2 -1 0 1 2at 1367.116 kb on - strand, within EX28DRAFT_1352at 1367.159 kb on + strand, within EX28DRAFT_1352at 1367.159 kb on + strand, within EX28DRAFT_1352at 1367.160 kb on - strand, within EX28DRAFT_1352at 1367.186 kb on + strand, within EX28DRAFT_1352at 1367.186 kb on + strand, within EX28DRAFT_1352at 1367.186 kb on + strand, within EX28DRAFT_1352at 1367.263 kb on + strand, within EX28DRAFT_1352at 1367.263 kb on + strand, within EX28DRAFT_1352at 1367.315 kb on + strand, within EX28DRAFT_1352at 1367.316 kb on - strand, within EX28DRAFT_1352at 1367.316 kb on - strand, within EX28DRAFT_1352at 1367.316 kb on - strand, within EX28DRAFT_1352at 1367.487 kb on + strand, within EX28DRAFT_1352at 1367.487 kb on + strand, within EX28DRAFT_1352at 1367.488 kb on - strand, within EX28DRAFT_1352at 1367.745 kb on + strandat 1367.759 kb on - strandat 1367.769 kb on - strandat 1367.784 kb on + strandat 1367.845 kb on - strandat 1367.891 kb on - strandat 1368.129 kb on + strand, within EX28DRAFT_1353at 1368.163 kb on + strand, within EX28DRAFT_1353at 1368.202 kb on + strand, within EX28DRAFT_1353at 1368.203 kb on - strand, within EX28DRAFT_1353at 1368.310 kb on + strand, within EX28DRAFT_1353at 1368.311 kb on - strand, within EX28DRAFT_1353at 1368.311 kb on - strand, within EX28DRAFT_1353at 1368.388 kb on - strand, within EX28DRAFT_1353at 1368.449 kb on - strand, within EX28DRAFT_1353at 1368.501 kb on - strand, within EX28DRAFT_1353at 1369.032 kb on - strand, within EX28DRAFT_1353at 1369.289 kb on - strand, within EX28DRAFT_1353at 1369.291 kb on - strand, within EX28DRAFT_1353at 1369.301 kb on - strand, within EX28DRAFT_1353at 1369.401 kb on + strandat 1369.402 kb on - strandat 1369.402 kb on - strandat 1369.406 kb on - strandat 1369.406 kb on - strandat 1369.516 kb on + strandat 1369.516 kb on + strandat 1369.517 kb on - strandat 1369.541 kb on - strandat 1369.627 kb on + strandat 1369.752 kb on - strand, within EX28DRAFT_1354at 1369.752 kb on - strand, within EX28DRAFT_1354at 1369.752 kb on - strand, within EX28DRAFT_1354at 1369.754 kb on - strand, within EX28DRAFT_1354at 1369.782 kb on + strand, within EX28DRAFT_1354at 1369.783 kb on - strand, within EX28DRAFT_1354at 1369.825 kb on + strand, within EX28DRAFT_1354at 1369.826 kb on - strand, within EX28DRAFT_1354at 1369.829 kb on + strand, within EX28DRAFT_1354at 1369.829 kb on + strand, within EX28DRAFT_1354at 1369.829 kb on + strand, within EX28DRAFT_1354at 1369.906 kb on + strand, within EX28DRAFT_1354at 1369.989 kb on + strand, within EX28DRAFT_1354at 1370.133 kb on + strand, within EX28DRAFT_1354at 1370.133 kb on + strand, within EX28DRAFT_1354at 1370.133 kb on + strand, within EX28DRAFT_1354at 1370.417 kb on + strand, within EX28DRAFT_1354

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,367,116 - EX28DRAFT_1352 0.55 -1.1
1,367,159 + EX28DRAFT_1352 0.58 -0.1
1,367,159 + EX28DRAFT_1352 0.58 -1.1
1,367,160 - EX28DRAFT_1352 0.58 +0.3
1,367,186 + EX28DRAFT_1352 0.60 -0.1
1,367,186 + EX28DRAFT_1352 0.60 +0.1
1,367,186 + EX28DRAFT_1352 0.60 +0.1
1,367,263 + EX28DRAFT_1352 0.66 +0.5
1,367,263 + EX28DRAFT_1352 0.66 -0.3
1,367,315 + EX28DRAFT_1352 0.70 -0.2
1,367,316 - EX28DRAFT_1352 0.70 -0.5
1,367,316 - EX28DRAFT_1352 0.70 +0.8
1,367,316 - EX28DRAFT_1352 0.70 -0.1
1,367,487 + EX28DRAFT_1352 0.83 -0.1
1,367,487 + EX28DRAFT_1352 0.83 -0.6
1,367,488 - EX28DRAFT_1352 0.83 +0.1
1,367,745 + -0.5
1,367,759 - +0.2
1,367,769 - -1.0
1,367,784 + +1.9
1,367,845 - +0.1
1,367,891 - +0.1
1,368,129 + EX28DRAFT_1353 0.16 +0.6
1,368,163 + EX28DRAFT_1353 0.18 +0.5
1,368,202 + EX28DRAFT_1353 0.20 +0.5
1,368,203 - EX28DRAFT_1353 0.20 -0.2
1,368,310 + EX28DRAFT_1353 0.27 -0.9
1,368,311 - EX28DRAFT_1353 0.27 -2.4
1,368,311 - EX28DRAFT_1353 0.27 +0.3
1,368,388 - EX28DRAFT_1353 0.32 -0.1
1,368,449 - EX28DRAFT_1353 0.35 -1.0
1,368,501 - EX28DRAFT_1353 0.38 -0.3
1,369,032 - EX28DRAFT_1353 0.71 -0.5
1,369,289 - EX28DRAFT_1353 0.86 +0.2
1,369,291 - EX28DRAFT_1353 0.86 -0.6
1,369,301 - EX28DRAFT_1353 0.87 -0.8
1,369,401 + +0.4
1,369,402 - -0.4
1,369,402 - +0.1
1,369,406 - -0.4
1,369,406 - +0.3
1,369,516 + +0.2
1,369,516 + -0.4
1,369,517 - -0.1
1,369,541 - -0.1
1,369,627 + -1.9
1,369,752 - EX28DRAFT_1354 0.19 -0.0
1,369,752 - EX28DRAFT_1354 0.19 +0.5
1,369,752 - EX28DRAFT_1354 0.19 -0.3
1,369,754 - EX28DRAFT_1354 0.20 +0.2
1,369,782 + EX28DRAFT_1354 0.22 +0.5
1,369,783 - EX28DRAFT_1354 0.22 -0.6
1,369,825 + EX28DRAFT_1354 0.26 +0.4
1,369,826 - EX28DRAFT_1354 0.26 -0.6
1,369,829 + EX28DRAFT_1354 0.27 -0.3
1,369,829 + EX28DRAFT_1354 0.27 +0.1
1,369,829 + EX28DRAFT_1354 0.27 -0.3
1,369,906 + EX28DRAFT_1354 0.34 -0.8
1,369,989 + EX28DRAFT_1354 0.41 -0.4
1,370,133 + EX28DRAFT_1354 0.55 +0.2
1,370,133 + EX28DRAFT_1354 0.55 -0.2
1,370,133 + EX28DRAFT_1354 0.55 +0.1
1,370,417 + EX28DRAFT_1354 0.81 +0.1

Or see this region's nucleotide sequence