Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1352 and EX28DRAFT_1353 are separated by 158 nucleotides EX28DRAFT_1353 and EX28DRAFT_1354 are separated by 22 nucleotides
EX28DRAFT_1352: EX28DRAFT_1352 - Arabinose efflux permease, at 1,366,388 to 1,367,707
_1352
EX28DRAFT_1353: EX28DRAFT_1353 - Major Facilitator Superfamily, at 1,367,866 to 1,369,518
_1353
EX28DRAFT_1354: EX28DRAFT_1354 - Multidrug resistance efflux pump, at 1,369,541 to 1,370,623
_1354
Position (kb)
1367
1368
1369
1370 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1367.116 kb on - strand, within EX28DRAFT_1352 at 1367.159 kb on + strand, within EX28DRAFT_1352 at 1367.159 kb on + strand, within EX28DRAFT_1352 at 1367.160 kb on - strand, within EX28DRAFT_1352 at 1367.186 kb on + strand, within EX28DRAFT_1352 at 1367.186 kb on + strand, within EX28DRAFT_1352 at 1367.186 kb on + strand, within EX28DRAFT_1352 at 1367.263 kb on + strand, within EX28DRAFT_1352 at 1367.263 kb on + strand, within EX28DRAFT_1352 at 1367.315 kb on + strand, within EX28DRAFT_1352 at 1367.316 kb on - strand, within EX28DRAFT_1352 at 1367.316 kb on - strand, within EX28DRAFT_1352 at 1367.316 kb on - strand, within EX28DRAFT_1352 at 1367.487 kb on + strand, within EX28DRAFT_1352 at 1367.487 kb on + strand, within EX28DRAFT_1352 at 1367.488 kb on - strand, within EX28DRAFT_1352 at 1367.745 kb on + strand at 1367.759 kb on - strand at 1367.769 kb on - strand at 1367.784 kb on + strand at 1367.845 kb on - strand at 1367.891 kb on - strand at 1368.129 kb on + strand, within EX28DRAFT_1353 at 1368.163 kb on + strand, within EX28DRAFT_1353 at 1368.202 kb on + strand, within EX28DRAFT_1353 at 1368.203 kb on - strand, within EX28DRAFT_1353 at 1368.310 kb on + strand, within EX28DRAFT_1353 at 1368.311 kb on - strand, within EX28DRAFT_1353 at 1368.311 kb on - strand, within EX28DRAFT_1353 at 1368.388 kb on - strand, within EX28DRAFT_1353 at 1368.449 kb on - strand, within EX28DRAFT_1353 at 1368.501 kb on - strand, within EX28DRAFT_1353 at 1369.032 kb on - strand, within EX28DRAFT_1353 at 1369.289 kb on - strand, within EX28DRAFT_1353 at 1369.291 kb on - strand, within EX28DRAFT_1353 at 1369.301 kb on - strand, within EX28DRAFT_1353 at 1369.401 kb on + strand at 1369.402 kb on - strand at 1369.402 kb on - strand at 1369.406 kb on - strand at 1369.406 kb on - strand at 1369.516 kb on + strand at 1369.516 kb on + strand at 1369.517 kb on - strand at 1369.541 kb on - strand at 1369.627 kb on + strand at 1369.752 kb on - strand, within EX28DRAFT_1354 at 1369.752 kb on - strand, within EX28DRAFT_1354 at 1369.752 kb on - strand, within EX28DRAFT_1354 at 1369.754 kb on - strand, within EX28DRAFT_1354 at 1369.782 kb on + strand, within EX28DRAFT_1354 at 1369.783 kb on - strand, within EX28DRAFT_1354 at 1369.825 kb on + strand, within EX28DRAFT_1354 at 1369.826 kb on - strand, within EX28DRAFT_1354 at 1369.829 kb on + strand, within EX28DRAFT_1354 at 1369.829 kb on + strand, within EX28DRAFT_1354 at 1369.829 kb on + strand, within EX28DRAFT_1354 at 1369.906 kb on + strand, within EX28DRAFT_1354 at 1369.989 kb on + strand, within EX28DRAFT_1354 at 1370.133 kb on + strand, within EX28DRAFT_1354 at 1370.133 kb on + strand, within EX28DRAFT_1354 at 1370.133 kb on + strand, within EX28DRAFT_1354 at 1370.417 kb on + strand, within EX28DRAFT_1354
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,367,116 - EX28DRAFT_1352 0.55 -1.1 1,367,159 + EX28DRAFT_1352 0.58 -0.1 1,367,159 + EX28DRAFT_1352 0.58 -1.1 1,367,160 - EX28DRAFT_1352 0.58 +0.3 1,367,186 + EX28DRAFT_1352 0.60 -0.1 1,367,186 + EX28DRAFT_1352 0.60 +0.1 1,367,186 + EX28DRAFT_1352 0.60 +0.1 1,367,263 + EX28DRAFT_1352 0.66 +0.5 1,367,263 + EX28DRAFT_1352 0.66 -0.3 1,367,315 + EX28DRAFT_1352 0.70 -0.2 1,367,316 - EX28DRAFT_1352 0.70 -0.5 1,367,316 - EX28DRAFT_1352 0.70 +0.8 1,367,316 - EX28DRAFT_1352 0.70 -0.1 1,367,487 + EX28DRAFT_1352 0.83 -0.1 1,367,487 + EX28DRAFT_1352 0.83 -0.6 1,367,488 - EX28DRAFT_1352 0.83 +0.1 1,367,745 + -0.5 1,367,759 - +0.2 1,367,769 - -1.0 1,367,784 + +1.9 1,367,845 - +0.1 1,367,891 - +0.1 1,368,129 + EX28DRAFT_1353 0.16 +0.6 1,368,163 + EX28DRAFT_1353 0.18 +0.5 1,368,202 + EX28DRAFT_1353 0.20 +0.5 1,368,203 - EX28DRAFT_1353 0.20 -0.2 1,368,310 + EX28DRAFT_1353 0.27 -0.9 1,368,311 - EX28DRAFT_1353 0.27 -2.4 1,368,311 - EX28DRAFT_1353 0.27 +0.3 1,368,388 - EX28DRAFT_1353 0.32 -0.1 1,368,449 - EX28DRAFT_1353 0.35 -1.0 1,368,501 - EX28DRAFT_1353 0.38 -0.3 1,369,032 - EX28DRAFT_1353 0.71 -0.5 1,369,289 - EX28DRAFT_1353 0.86 +0.2 1,369,291 - EX28DRAFT_1353 0.86 -0.6 1,369,301 - EX28DRAFT_1353 0.87 -0.8 1,369,401 + +0.4 1,369,402 - -0.4 1,369,402 - +0.1 1,369,406 - -0.4 1,369,406 - +0.3 1,369,516 + +0.2 1,369,516 + -0.4 1,369,517 - -0.1 1,369,541 - -0.1 1,369,627 + -1.9 1,369,752 - EX28DRAFT_1354 0.19 -0.0 1,369,752 - EX28DRAFT_1354 0.19 +0.5 1,369,752 - EX28DRAFT_1354 0.19 -0.3 1,369,754 - EX28DRAFT_1354 0.20 +0.2 1,369,782 + EX28DRAFT_1354 0.22 +0.5 1,369,783 - EX28DRAFT_1354 0.22 -0.6 1,369,825 + EX28DRAFT_1354 0.26 +0.4 1,369,826 - EX28DRAFT_1354 0.26 -0.6 1,369,829 + EX28DRAFT_1354 0.27 -0.3 1,369,829 + EX28DRAFT_1354 0.27 +0.1 1,369,829 + EX28DRAFT_1354 0.27 -0.3 1,369,906 + EX28DRAFT_1354 0.34 -0.8 1,369,989 + EX28DRAFT_1354 0.41 -0.4 1,370,133 + EX28DRAFT_1354 0.55 +0.2 1,370,133 + EX28DRAFT_1354 0.55 -0.2 1,370,133 + EX28DRAFT_1354 0.55 +0.1 1,370,417 + EX28DRAFT_1354 0.81 +0.1
Or see this region's nucleotide sequence