Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1255

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1254 and EX28DRAFT_1255 are separated by 258 nucleotidesEX28DRAFT_1255 and EX28DRAFT_1256 are separated by 75 nucleotides EX28DRAFT_1254: EX28DRAFT_1254 - Transcriptional regulator, at 1,270,018 to 1,270,941 _1254 EX28DRAFT_1255: EX28DRAFT_1255 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 1,271,200 to 1,273,581 _1255 EX28DRAFT_1256: EX28DRAFT_1256 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 1,273,657 to 1,275,348 _1256 Position (kb) 1271 1272 1273 1274Strain fitness (log2 ratio) -2 -1 0 1at 1270.218 kb on + strand, within EX28DRAFT_1254at 1270.218 kb on + strand, within EX28DRAFT_1254at 1270.218 kb on + strand, within EX28DRAFT_1254at 1270.219 kb on - strand, within EX28DRAFT_1254at 1270.219 kb on - strand, within EX28DRAFT_1254at 1270.432 kb on - strand, within EX28DRAFT_1254at 1270.523 kb on - strand, within EX28DRAFT_1254at 1270.690 kb on - strand, within EX28DRAFT_1254at 1270.690 kb on - strand, within EX28DRAFT_1254at 1270.743 kb on + strand, within EX28DRAFT_1254at 1270.743 kb on + strand, within EX28DRAFT_1254at 1270.759 kb on + strand, within EX28DRAFT_1254at 1270.760 kb on - strand, within EX28DRAFT_1254at 1270.760 kb on - strand, within EX28DRAFT_1254at 1270.760 kb on - strand, within EX28DRAFT_1254at 1270.799 kb on + strand, within EX28DRAFT_1254at 1270.799 kb on + strand, within EX28DRAFT_1254at 1270.830 kb on + strand, within EX28DRAFT_1254at 1270.939 kb on + strandat 1270.939 kb on + strandat 1270.940 kb on - strandat 1271.013 kb on - strandat 1271.061 kb on - strandat 1271.235 kb on + strandat 1271.235 kb on + strandat 1271.235 kb on + strandat 1271.301 kb on + strandat 1271.302 kb on - strandat 1271.330 kb on - strandat 1271.422 kb on - strandat 1271.490 kb on + strand, within EX28DRAFT_1255at 1271.490 kb on + strand, within EX28DRAFT_1255at 1271.491 kb on - strand, within EX28DRAFT_1255at 1271.491 kb on - strand, within EX28DRAFT_1255at 1271.767 kb on - strand, within EX28DRAFT_1255at 1271.790 kb on - strand, within EX28DRAFT_1255at 1271.790 kb on - strand, within EX28DRAFT_1255at 1271.888 kb on - strand, within EX28DRAFT_1255at 1271.896 kb on - strand, within EX28DRAFT_1255at 1271.902 kb on + strand, within EX28DRAFT_1255at 1271.902 kb on + strand, within EX28DRAFT_1255at 1271.908 kb on - strand, within EX28DRAFT_1255at 1272.047 kb on + strand, within EX28DRAFT_1255at 1272.048 kb on - strand, within EX28DRAFT_1255at 1272.271 kb on + strand, within EX28DRAFT_1255at 1272.271 kb on + strand, within EX28DRAFT_1255at 1272.271 kb on + strand, within EX28DRAFT_1255at 1272.271 kb on + strand, within EX28DRAFT_1255at 1272.272 kb on - strand, within EX28DRAFT_1255at 1272.391 kb on + strand, within EX28DRAFT_1255at 1272.454 kb on + strand, within EX28DRAFT_1255at 1272.521 kb on - strand, within EX28DRAFT_1255at 1272.741 kb on - strand, within EX28DRAFT_1255at 1272.802 kb on + strand, within EX28DRAFT_1255at 1273.036 kb on - strand, within EX28DRAFT_1255at 1273.057 kb on + strand, within EX28DRAFT_1255at 1273.057 kb on + strand, within EX28DRAFT_1255at 1273.058 kb on - strand, within EX28DRAFT_1255at 1273.058 kb on - strand, within EX28DRAFT_1255at 1273.385 kb on - strandat 1273.468 kb on + strandat 1273.469 kb on - strandat 1273.469 kb on - strandat 1273.495 kb on + strandat 1273.495 kb on + strandat 1273.495 kb on + strandat 1273.495 kb on + strandat 1273.496 kb on - strandat 1273.496 kb on - strandat 1273.496 kb on - strandat 1273.496 kb on - strandat 1273.546 kb on + strandat 1273.546 kb on + strandat 1273.547 kb on - strandat 1273.580 kb on - strandat 1273.580 kb on - strandat 1273.617 kb on - strandat 1274.503 kb on + strand, within EX28DRAFT_1256

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,270,218 + EX28DRAFT_1254 0.22 -1.1
1,270,218 + EX28DRAFT_1254 0.22 +0.5
1,270,218 + EX28DRAFT_1254 0.22 -0.6
1,270,219 - EX28DRAFT_1254 0.22 +0.8
1,270,219 - EX28DRAFT_1254 0.22 -0.0
1,270,432 - EX28DRAFT_1254 0.45 -0.1
1,270,523 - EX28DRAFT_1254 0.55 -1.0
1,270,690 - EX28DRAFT_1254 0.73 -0.1
1,270,690 - EX28DRAFT_1254 0.73 +0.0
1,270,743 + EX28DRAFT_1254 0.78 +0.0
1,270,743 + EX28DRAFT_1254 0.78 -0.4
1,270,759 + EX28DRAFT_1254 0.80 +0.4
1,270,760 - EX28DRAFT_1254 0.80 +0.1
1,270,760 - EX28DRAFT_1254 0.80 -0.4
1,270,760 - EX28DRAFT_1254 0.80 -0.5
1,270,799 + EX28DRAFT_1254 0.85 -0.9
1,270,799 + EX28DRAFT_1254 0.85 -0.2
1,270,830 + EX28DRAFT_1254 0.88 -1.3
1,270,939 + +0.2
1,270,939 + -0.3
1,270,940 - -0.2
1,271,013 - -1.3
1,271,061 - +0.2
1,271,235 + -0.1
1,271,235 + +0.1
1,271,235 + -0.1
1,271,301 + -0.0
1,271,302 - -0.3
1,271,330 - +0.2
1,271,422 - +0.0
1,271,490 + EX28DRAFT_1255 0.12 +0.7
1,271,490 + EX28DRAFT_1255 0.12 +0.1
1,271,491 - EX28DRAFT_1255 0.12 -0.2
1,271,491 - EX28DRAFT_1255 0.12 +0.3
1,271,767 - EX28DRAFT_1255 0.24 -0.3
1,271,790 - EX28DRAFT_1255 0.25 -0.7
1,271,790 - EX28DRAFT_1255 0.25 -0.1
1,271,888 - EX28DRAFT_1255 0.29 -0.2
1,271,896 - EX28DRAFT_1255 0.29 -0.2
1,271,902 + EX28DRAFT_1255 0.29 -0.1
1,271,902 + EX28DRAFT_1255 0.29 -0.7
1,271,908 - EX28DRAFT_1255 0.30 +0.2
1,272,047 + EX28DRAFT_1255 0.36 -1.2
1,272,048 - EX28DRAFT_1255 0.36 +0.3
1,272,271 + EX28DRAFT_1255 0.45 -1.1
1,272,271 + EX28DRAFT_1255 0.45 +0.3
1,272,271 + EX28DRAFT_1255 0.45 -0.5
1,272,271 + EX28DRAFT_1255 0.45 +0.8
1,272,272 - EX28DRAFT_1255 0.45 +0.5
1,272,391 + EX28DRAFT_1255 0.50 +0.1
1,272,454 + EX28DRAFT_1255 0.53 -0.1
1,272,521 - EX28DRAFT_1255 0.55 -0.1
1,272,741 - EX28DRAFT_1255 0.65 +0.0
1,272,802 + EX28DRAFT_1255 0.67 +0.4
1,273,036 - EX28DRAFT_1255 0.77 -1.0
1,273,057 + EX28DRAFT_1255 0.78 -0.4
1,273,057 + EX28DRAFT_1255 0.78 +0.2
1,273,058 - EX28DRAFT_1255 0.78 -0.4
1,273,058 - EX28DRAFT_1255 0.78 -0.6
1,273,385 - +1.6
1,273,468 + -0.1
1,273,469 - -0.4
1,273,469 - -0.4
1,273,495 + +0.4
1,273,495 + -0.8
1,273,495 + -0.1
1,273,495 + +0.7
1,273,496 - +0.1
1,273,496 - +0.7
1,273,496 - +0.5
1,273,496 - +1.4
1,273,546 + -1.9
1,273,546 + -0.2
1,273,547 - +0.1
1,273,580 - -0.1
1,273,580 - +0.2
1,273,617 - -0.0
1,274,503 + EX28DRAFT_1256 0.50 -0.4

Or see this region's nucleotide sequence