Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0443 and EX28DRAFT_0444 overlap by 1 nucleotides EX28DRAFT_0444 and EX28DRAFT_0445 overlap by 1 nucleotides
EX28DRAFT_0443: EX28DRAFT_0443 - Periplasmic protein involved in polysaccharide export, at 424,003 to 425,143
_0443
EX28DRAFT_0444: EX28DRAFT_0444 - Protein-tyrosine-phosphatase, at 425,143 to 425,592
_0444
EX28DRAFT_0445: EX28DRAFT_0445 - capsular exopolysaccharide family, at 425,592 to 427,772
_0445
Position (kb) 425
426 Strain fitness (log2 ratio) -1
0
1 at 424.332 kb on + strand, within EX28DRAFT_0443 at 424.332 kb on + strand, within EX28DRAFT_0443 at 424.371 kb on + strand, within EX28DRAFT_0443 at 424.382 kb on - strand, within EX28DRAFT_0443 at 424.395 kb on + strand, within EX28DRAFT_0443 at 424.519 kb on + strand, within EX28DRAFT_0443 at 424.519 kb on + strand, within EX28DRAFT_0443 at 424.520 kb on - strand, within EX28DRAFT_0443 at 424.520 kb on - strand, within EX28DRAFT_0443 at 424.520 kb on - strand, within EX28DRAFT_0443 at 424.632 kb on + strand, within EX28DRAFT_0443 at 424.680 kb on + strand, within EX28DRAFT_0443 at 424.681 kb on - strand, within EX28DRAFT_0443 at 424.681 kb on - strand, within EX28DRAFT_0443 at 424.801 kb on - strand, within EX28DRAFT_0443 at 424.873 kb on + strand, within EX28DRAFT_0443 at 424.915 kb on + strand, within EX28DRAFT_0443 at 424.915 kb on + strand, within EX28DRAFT_0443 at 424.916 kb on - strand, within EX28DRAFT_0443 at 424.945 kb on + strand, within EX28DRAFT_0443 at 424.949 kb on + strand, within EX28DRAFT_0443 at 424.949 kb on + strand, within EX28DRAFT_0443 at 424.950 kb on - strand, within EX28DRAFT_0443 at 425.012 kb on + strand, within EX28DRAFT_0443 at 425.025 kb on - strand, within EX28DRAFT_0443 at 425.025 kb on - strand, within EX28DRAFT_0443 at 425.120 kb on + strand at 425.141 kb on + strand at 425.142 kb on - strand at 425.178 kb on + strand at 425.238 kb on + strand, within EX28DRAFT_0444 at 425.519 kb on - strand, within EX28DRAFT_0444 at 425.519 kb on - strand, within EX28DRAFT_0444 at 425.519 kb on - strand, within EX28DRAFT_0444 at 425.591 kb on - strand at 425.604 kb on - strand at 425.616 kb on + strand at 425.616 kb on + strand at 425.616 kb on + strand at 425.616 kb on + strand at 425.616 kb on + strand at 425.616 kb on + strand at 425.617 kb on - strand at 425.619 kb on - strand at 425.915 kb on - strand, within EX28DRAFT_0445 at 425.925 kb on + strand, within EX28DRAFT_0445 at 425.925 kb on + strand, within EX28DRAFT_0445 at 425.925 kb on + strand, within EX28DRAFT_0445 at 425.926 kb on - strand, within EX28DRAFT_0445 at 425.926 kb on - strand, within EX28DRAFT_0445 at 425.987 kb on + strand, within EX28DRAFT_0445 at 425.988 kb on - strand, within EX28DRAFT_0445 at 426.001 kb on + strand, within EX28DRAFT_0445 at 426.002 kb on - strand, within EX28DRAFT_0445 at 426.248 kb on + strand, within EX28DRAFT_0445 at 426.278 kb on + strand, within EX28DRAFT_0445 at 426.332 kb on + strand, within EX28DRAFT_0445 at 426.332 kb on + strand, within EX28DRAFT_0445 at 426.333 kb on - strand, within EX28DRAFT_0445 at 426.333 kb on - strand, within EX28DRAFT_0445 at 426.335 kb on + strand, within EX28DRAFT_0445 at 426.365 kb on + strand, within EX28DRAFT_0445 at 426.426 kb on - strand, within EX28DRAFT_0445 at 426.499 kb on + strand, within EX28DRAFT_0445 at 426.499 kb on + strand, within EX28DRAFT_0445 at 426.500 kb on - strand, within EX28DRAFT_0445 at 426.500 kb on - strand, within EX28DRAFT_0445 at 426.500 kb on - strand, within EX28DRAFT_0445
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 424,332 + EX28DRAFT_0443 0.29 -1.3 424,332 + EX28DRAFT_0443 0.29 +0.2 424,371 + EX28DRAFT_0443 0.32 +0.3 424,382 - EX28DRAFT_0443 0.33 +0.6 424,395 + EX28DRAFT_0443 0.34 -0.3 424,519 + EX28DRAFT_0443 0.45 +0.2 424,519 + EX28DRAFT_0443 0.45 +0.3 424,520 - EX28DRAFT_0443 0.45 -0.2 424,520 - EX28DRAFT_0443 0.45 -0.3 424,520 - EX28DRAFT_0443 0.45 -0.3 424,632 + EX28DRAFT_0443 0.55 -0.2 424,680 + EX28DRAFT_0443 0.59 -0.1 424,681 - EX28DRAFT_0443 0.59 -0.3 424,681 - EX28DRAFT_0443 0.59 +0.0 424,801 - EX28DRAFT_0443 0.70 +0.7 424,873 + EX28DRAFT_0443 0.76 +0.0 424,915 + EX28DRAFT_0443 0.80 +0.0 424,915 + EX28DRAFT_0443 0.80 -0.7 424,916 - EX28DRAFT_0443 0.80 -1.5 424,945 + EX28DRAFT_0443 0.83 -0.1 424,949 + EX28DRAFT_0443 0.83 -0.1 424,949 + EX28DRAFT_0443 0.83 +0.6 424,950 - EX28DRAFT_0443 0.83 -0.4 425,012 + EX28DRAFT_0443 0.88 -0.1 425,025 - EX28DRAFT_0443 0.90 -0.3 425,025 - EX28DRAFT_0443 0.90 +0.0 425,120 + +0.1 425,141 + +0.8 425,142 - +0.1 425,178 + -1.1 425,238 + EX28DRAFT_0444 0.21 -1.0 425,519 - EX28DRAFT_0444 0.84 -0.1 425,519 - EX28DRAFT_0444 0.84 -0.6 425,519 - EX28DRAFT_0444 0.84 -0.7 425,591 - -0.0 425,604 - -0.3 425,616 + -0.5 425,616 + +0.8 425,616 + +0.2 425,616 + -0.2 425,616 + +0.2 425,616 + -0.2 425,617 - -0.3 425,619 - -0.1 425,915 - EX28DRAFT_0445 0.15 +0.8 425,925 + EX28DRAFT_0445 0.15 +0.2 425,925 + EX28DRAFT_0445 0.15 +0.2 425,925 + EX28DRAFT_0445 0.15 +0.7 425,926 - EX28DRAFT_0445 0.15 -1.2 425,926 - EX28DRAFT_0445 0.15 +0.5 425,987 + EX28DRAFT_0445 0.18 +0.3 425,988 - EX28DRAFT_0445 0.18 +0.1 426,001 + EX28DRAFT_0445 0.19 -0.8 426,002 - EX28DRAFT_0445 0.19 -0.8 426,248 + EX28DRAFT_0445 0.30 -0.1 426,278 + EX28DRAFT_0445 0.31 +0.2 426,332 + EX28DRAFT_0445 0.34 -0.5 426,332 + EX28DRAFT_0445 0.34 -0.8 426,333 - EX28DRAFT_0445 0.34 -1.3 426,333 - EX28DRAFT_0445 0.34 -0.5 426,335 + EX28DRAFT_0445 0.34 +0.1 426,365 + EX28DRAFT_0445 0.35 -1.0 426,426 - EX28DRAFT_0445 0.38 -0.3 426,499 + EX28DRAFT_0445 0.42 -0.5 426,499 + EX28DRAFT_0445 0.42 +0.1 426,500 - EX28DRAFT_0445 0.42 -0.1 426,500 - EX28DRAFT_0445 0.42 -0.2 426,500 - EX28DRAFT_0445 0.42 -0.8
Or see this region's nucleotide sequence