Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0390

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0389 and EX28DRAFT_0390 are separated by 205 nucleotidesEX28DRAFT_0390 and EX28DRAFT_0391 are separated by 117 nucleotidesEX28DRAFT_0391 and EX28DRAFT_0392 are separated by 1 nucleotides EX28DRAFT_0389: EX28DRAFT_0389 - Mannitol-1-phosphate/altronate dehydrogenases, at 362,623 to 364,089 _0389 EX28DRAFT_0390: EX28DRAFT_0390 - mannonate dehydratase, at 364,295 to 365,485 _0390 EX28DRAFT_0391: EX28DRAFT_0391 - elongation factor P-like protein YeiP, at 365,603 to 366,404 _0391 EX28DRAFT_0392: EX28DRAFT_0392 - hypothetical protein, at 366,406 to 366,594 _0392 Position (kb) 364 365 366Strain fitness (log2 ratio) -2 -1 0 1at 363.297 kb on + strand, within EX28DRAFT_0389at 363.726 kb on + strand, within EX28DRAFT_0389at 363.756 kb on + strand, within EX28DRAFT_0389at 363.922 kb on - strand, within EX28DRAFT_0389at 364.095 kb on - strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.212 kb on - strandat 364.212 kb on - strandat 364.212 kb on - strandat 364.212 kb on - strandat 364.212 kb on - strandat 364.212 kb on - strandat 364.212 kb on - strandat 364.242 kb on + strandat 364.243 kb on - strandat 364.317 kb on - strandat 364.393 kb on + strandat 364.411 kb on - strandat 364.526 kb on + strand, within EX28DRAFT_0390at 364.527 kb on - strand, within EX28DRAFT_0390at 364.543 kb on + strand, within EX28DRAFT_0390at 364.543 kb on + strand, within EX28DRAFT_0390at 364.589 kb on - strand, within EX28DRAFT_0390at 364.742 kb on + strand, within EX28DRAFT_0390at 364.743 kb on - strand, within EX28DRAFT_0390at 364.822 kb on + strand, within EX28DRAFT_0390at 364.822 kb on + strand, within EX28DRAFT_0390at 364.857 kb on - strand, within EX28DRAFT_0390at 364.859 kb on - strand, within EX28DRAFT_0390at 364.906 kb on + strand, within EX28DRAFT_0390at 365.053 kb on + strand, within EX28DRAFT_0390at 365.053 kb on + strand, within EX28DRAFT_0390at 365.054 kb on - strand, within EX28DRAFT_0390at 365.054 kb on - strand, within EX28DRAFT_0390at 365.076 kb on + strand, within EX28DRAFT_0390at 365.087 kb on + strand, within EX28DRAFT_0390at 365.087 kb on + strand, within EX28DRAFT_0390at 365.087 kb on + strand, within EX28DRAFT_0390at 365.087 kb on + strand, within EX28DRAFT_0390at 365.088 kb on - strand, within EX28DRAFT_0390at 365.088 kb on - strand, within EX28DRAFT_0390at 365.088 kb on - strand, within EX28DRAFT_0390at 365.098 kb on + strand, within EX28DRAFT_0390at 365.099 kb on - strand, within EX28DRAFT_0390at 365.099 kb on - strand, within EX28DRAFT_0390at 365.261 kb on - strand, within EX28DRAFT_0390at 365.261 kb on - strand, within EX28DRAFT_0390at 365.329 kb on + strand, within EX28DRAFT_0390at 365.330 kb on - strand, within EX28DRAFT_0390at 365.483 kb on + strandat 365.622 kb on + strandat 365.623 kb on - strandat 365.623 kb on - strandat 365.670 kb on + strandat 365.671 kb on - strandat 365.908 kb on - strand, within EX28DRAFT_0391at 365.931 kb on + strand, within EX28DRAFT_0391at 365.931 kb on + strand, within EX28DRAFT_0391at 365.949 kb on + strand, within EX28DRAFT_0391at 366.132 kb on + strand, within EX28DRAFT_0391at 366.133 kb on - strand, within EX28DRAFT_0391at 366.145 kb on + strand, within EX28DRAFT_0391at 366.272 kb on - strand, within EX28DRAFT_0391at 366.286 kb on - strand, within EX28DRAFT_0391at 366.373 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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363,297 + EX28DRAFT_0389 0.46 -0.2
363,726 + EX28DRAFT_0389 0.75 +1.0
363,756 + EX28DRAFT_0389 0.77 -1.5
363,922 - EX28DRAFT_0389 0.89 +1.4
364,095 - -0.3
364,211 + +0.1
364,211 + -0.2
364,211 + +0.6
364,211 + -0.6
364,211 + +0.6
364,211 + -0.3
364,211 + +0.2
364,211 + -0.6
364,211 + +0.1
364,211 + -0.1
364,211 + -0.1
364,212 - +0.7
364,212 - -0.1
364,212 - -0.1
364,212 - -0.4
364,212 - -0.3
364,212 - -0.1
364,212 - -0.3
364,242 + -0.0
364,243 - +0.2
364,317 - -0.2
364,393 + +0.6
364,411 - -0.8
364,526 + EX28DRAFT_0390 0.19 +0.1
364,527 - EX28DRAFT_0390 0.19 -0.0
364,543 + EX28DRAFT_0390 0.21 -0.0
364,543 + EX28DRAFT_0390 0.21 +0.2
364,589 - EX28DRAFT_0390 0.25 +0.5
364,742 + EX28DRAFT_0390 0.38 +0.8
364,743 - EX28DRAFT_0390 0.38 -1.0
364,822 + EX28DRAFT_0390 0.44 -1.8
364,822 + EX28DRAFT_0390 0.44 -0.0
364,857 - EX28DRAFT_0390 0.47 -0.1
364,859 - EX28DRAFT_0390 0.47 -2.2
364,906 + EX28DRAFT_0390 0.51 -1.0
365,053 + EX28DRAFT_0390 0.64 +0.0
365,053 + EX28DRAFT_0390 0.64 -0.1
365,054 - EX28DRAFT_0390 0.64 -0.0
365,054 - EX28DRAFT_0390 0.64 -0.3
365,076 + EX28DRAFT_0390 0.66 +1.0
365,087 + EX28DRAFT_0390 0.66 -1.0
365,087 + EX28DRAFT_0390 0.66 -0.9
365,087 + EX28DRAFT_0390 0.66 -0.9
365,087 + EX28DRAFT_0390 0.66 +0.4
365,088 - EX28DRAFT_0390 0.67 +0.0
365,088 - EX28DRAFT_0390 0.67 +0.1
365,088 - EX28DRAFT_0390 0.67 -0.2
365,098 + EX28DRAFT_0390 0.67 -0.1
365,099 - EX28DRAFT_0390 0.68 -0.0
365,099 - EX28DRAFT_0390 0.68 +0.3
365,261 - EX28DRAFT_0390 0.81 +0.3
365,261 - EX28DRAFT_0390 0.81 -0.2
365,329 + EX28DRAFT_0390 0.87 -0.1
365,330 - EX28DRAFT_0390 0.87 -0.4
365,483 + -0.5
365,622 + +0.1
365,623 - +0.0
365,623 - +0.4
365,670 + +0.3
365,671 - +0.6
365,908 - EX28DRAFT_0391 0.38 -0.3
365,931 + EX28DRAFT_0391 0.41 -0.3
365,931 + EX28DRAFT_0391 0.41 -0.4
365,949 + EX28DRAFT_0391 0.43 +0.7
366,132 + EX28DRAFT_0391 0.66 +0.0
366,133 - EX28DRAFT_0391 0.66 -0.0
366,145 + EX28DRAFT_0391 0.68 +0.1
366,272 - EX28DRAFT_0391 0.83 -0.4
366,286 - EX28DRAFT_0391 0.85 +0.5
366,373 - +0.0

Or see this region's nucleotide sequence